Tigriopus kingsejongensis

Overview
Full NameTigriopus kingsejongensis
GenusTigriopus
Specieskingsejongensis
Common NameTigriopus kingsejongensis
Abbreviationtking

Tigriopus kingsejongensis is a free-living intertidal copepod endemic to the Antarctic. The T. kingsejongensis genome has been recently published and provides an interesting example of cold adaptation [1]. The genome annotation was done using the Maker pipeline. The T. kingsejongensis genome and annotation have been imported into LiceBase from public data provided with the original publication and orthologs between the species have been computed by BlastP based on the automatic annotations.

1: Kang S, Ahn DH, Lee JH, Lee SG, Shin SC, Lee J, Min GS, Lee H, Kim HW, Kim S, Park H. The genome of the Antarctic-endemic copepod, Tigriopus kingsejongensis. Gigascience. 2017 Jan 1;6(1):1-9. doi: 10.1093/gigascience/giw010. PubMed PMID: 28369352; PubMed Central PMCID: PMC5467011.

Feature Summary
The following features are currently present for this organism
Feature TypeCount
exon120,172
protein26,056
gene12,774
mRNA12,772
Feature Browser
The following browser provides a quick view for new visitors. Use the searching mechanism to find specific features.
Feature NameUnique NameType
abc transporter atp-binding proteinmaker-scaffold331_size203155-snap-gene-0.3gene
abc transporter atp-binding proteinmaker-scaffold596_size128690-snap-gene-0.6gene
abc transporter atp-binding proteinsnap_masked-scaffold2503_size14991-processed-gene-0.2gene
abc transporter g family member 20 isoform x2snap_masked-scaffold87_size395581-processed-gene-0.4gene
abc transporter g family member 20-likesnap_masked-scaffold87_size395581-processed-gene-0.5gene
abc transporter g family member 20-like isoform x3maker-scaffold208_size258758-snap-gene-0.21gene
abc transporter permeasemaker-scaffold1332_size47164-snap-gene-0.2gene
abc transporter permeasemaker-scaffold441_size170131-snap-gene-0.32gene
abc transporter permease atp-binding proteinmaker-scaffold8083_size2872-snap-gene-0.2gene
abc transporter substrate-binding proteinsnap_masked-scaffold35_size523699-processed-gene-0.17gene
abhydrolase domain-containing protein 11maker-scaffold211_size255937-snap-gene-0.20gene
abhydrolase domain-containing protein 11maker-scaffold540_size141973-snap-gene-0.21gene
abhydrolase domain-containing protein 13maker-scaffold515_size150689-snap-gene-0.32gene
abhydrolase domain-containing protein 14bmaker-scaffold392_size185621-snap-gene-0.20gene
abhydrolase domain-containing protein 14bmaker-scaffold593_size129216-snap-gene-0.24gene
abhydrolase domain-containing protein 3maker-scaffold17_size721972-snap-gene-5.17gene
abhydrolase domain-containing protein 7maker-scaffold692_size110616-snap-gene-0.17gene
ablim snap_masked-scaffold11_size778918-processed-gene-6.28gene
abl interactor 1- partialmaker-scaffold456_size166325-snap-gene-0.26gene
abnormal spindle-like microcephaly-associated protein homologmaker-scaffold1923_size24897-snap-gene-0.7gene
abnormal spindle-like microcephaly-associated protein partialsnap_masked-scaffold1923_size24897-processed-gene-0.1gene
ace1 type acetylcholinesterasemaker-scaffold505_size153196-snap-gene-0.26gene
acetate ligasesnap_masked-scaffold2267_size17857-processed-gene-0.1gene
acetoacetyl- reductasesnap_masked-scaffold7143_size3358-processed-gene-0.1gene
acetolactate synthase large subunitmaker-scaffold122_size333723-snap-gene-2.38gene

Pages

Cross References
External references for this organism
DatabaseAccession
PMID28369352
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