Tigriopus kingsejongensis

Overview
Full NameTigriopus kingsejongensis
GenusTigriopus
Specieskingsejongensis
Common NameTigriopus kingsejongensis
Abbreviationtking

Tigriopus kingsejongensis is a free-living intertidal copepod endemic to the Antarctic. The T. kingsejongensis genome has been recently published and provides an interesting example of cold adaptation [1]. The genome annotation was done using the Maker pipeline. The T. kingsejongensis genome and annotation have been imported into LiceBase from public data provided with the original publication and orthologs between the species have been computed by BlastP based on the automatic annotations.

1: Kang S, Ahn DH, Lee JH, Lee SG, Shin SC, Lee J, Min GS, Lee H, Kim HW, Kim S, Park H. The genome of the Antarctic-endemic copepod, Tigriopus kingsejongensis. Gigascience. 2017 Jan 1;6(1):1-9. doi: 10.1093/gigascience/giw010. PubMed PMID: 28369352; PubMed Central PMCID: PMC5467011.

Feature Summary
The following features are currently present for this organism
Feature TypeCount
exon120,172
protein26,056
gene12,774
mRNA12,772
Feature Browser
The following browser provides a quick view for new visitors. Use the searching mechanism to find specific features.
Feature NameUnique NameType
transposon en spm sub-classmaker-scaffold7741_size3031-snap-gene-0.0gene
transposon ty3-i gag-pol polyproteinmaker-scaffold537_size144400-snap-gene-0.23gene
trans-sialidasemaker-scaffold897_size83880-snap-gene-0.14gene
-trehalose-phosphate synthasemaker-scaffold9_size846264-snap-gene-6.12gene
triacylglycerol lipasemaker-scaffold870_size86522-snap-gene-0.17gene
tricalbin- partialmaker-scaffold119_size336447-snap-gene-0.16gene
tricarboxylate transport mitochondrial precursorsnap_masked-scaffold868_size86715-processed-gene-0.0gene
trichohyalin maker-scaffold1716_size30199-snap-gene-0.8gene
trifunctional purine biosynthetic protein adenosine-3maker-scaffold10022_size2283-snap-gene-0.1gene
trimeric intracellular cation channel type bmaker-scaffold589_size129586-snap-gene-0.45gene
trimeric intracellular cation channel type bmaker-scaffold224_size251237-snap-gene-1.53gene
trimeric intracellular cation channel type bmaker-scaffold1679_size31325-snap-gene-0.6gene
trimethyllysine mitochondrialmaker-scaffold170_size291898-snap-gene-1.47gene
triosephosphate isomerasemaker-scaffold797_size95806-snap-gene-0.18gene
tripartite motif-containing protein 16-likemaker-scaffold961_size76351-snap-gene-0.29gene
tripartite motif-containing protein 16-likemaker-scaffold1028_size131186-snap-gene-0.57gene
tripartite motif-containing protein 2 isoform x2maker-scaffold408_size180710-snap-gene-0.41gene
tripartite motif-containing protein 3maker-scaffold259_size234575-snap-gene-1.18gene
tripeptidyl-peptidase maker-scaffold1668_size31705-snap-gene-0.8gene
tripeptidyl-peptidase 2maker-scaffold918_size81203-snap-gene-0.24gene
triple functional domainmaker-scaffold356_size197960-snap-gene-0.34gene
triple functional domain partialmaker-scaffold462_size163801-snap-gene-0.52gene
triple helix repeat-containing collagenmaker-scaffold130_size324016-snap-gene-2.22gene
tripsin snap_masked-scaffold1080_size63862-processed-gene-0.8gene
tripsin maker-scaffold1742_size29367-snap-gene-0.3gene

Pages

Cross References
External references for this organism
DatabaseAccession
PMID28369352
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