Tigriopus kingsejongensis

Overview
Full NameTigriopus kingsejongensis
GenusTigriopus
Specieskingsejongensis
Common NameTigriopus kingsejongensis
Abbreviationtking

Tigriopus kingsejongensis is a free-living intertidal copepod endemic to the Antarctic. The T. kingsejongensis genome has been recently published and provides an interesting example of cold adaptation [1]. The genome annotation was done using the Maker pipeline. The T. kingsejongensis genome and annotation have been imported into LiceBase from public data provided with the original publication and orthologs between the species have been computed by BlastP based on the automatic annotations.

1: Kang S, Ahn DH, Lee JH, Lee SG, Shin SC, Lee J, Min GS, Lee H, Kim HW, Kim S, Park H. The genome of the Antarctic-endemic copepod, Tigriopus kingsejongensis. Gigascience. 2017 Jan 1;6(1):1-9. doi: 10.1093/gigascience/giw010. PubMed PMID: 28369352; PubMed Central PMCID: PMC5467011.

Feature Summary
The following features are currently present for this organism
Feature TypeCount
exon120,172
protein26,056
gene12,774
mRNA12,772
Feature Browser
The following browser provides a quick view for new visitors. Use the searching mechanism to find specific features.
Feature NameUnique NameType
twitchin isoform x5maker-scaffold1215_size55314-snap-gene-0.9gene
twitchin isoform x9maker-scaffold401_size182380-snap-gene-0.21gene
two pore channel 1maker-scaffold865_size87005-snap-gene-0.16gene
two pore potassium channel protein sup-9maker-scaffold233_size243130-snap-gene-0.12gene
two pore potassium channel protein sup-9maker-scaffold419_size176504-snap-gene-0.33gene
type-1 angiotensin ii receptor-associated proteinmaker-scaffold386_size188734-snap-gene-0.21gene
type 4 fimbrial biogenesis proteinmaker-scaffold494_size155699-snap-gene-0.19gene
-type and c3hc4-type zinc finger-containing proteinmaker-scaffold1031_size68893-snap-gene-0.22gene
type ii citrate synthasesnap_masked-scaffold6763_size3619-processed-gene-0.2gene
type ii citrate synthasesnap_masked-scaffold2_size2283618-processed-gene-4.31gene
type ii cytoskeletal 6amaker-scaffold111_size354240-snap-gene-0.16gene
type ii inositol- -trisphosphate 5-phosphatasemaker-scaffold422_size175911-snap-gene-0.33gene
type i inositol- -bisphosphate 4-phosphatase-likemaker-scaffold456_size166325-snap-gene-0.28gene
type i inositol- -trisphosphate 5-phosphatasesnap_masked-scaffold631_size122145-processed-gene-0.21gene
type i inositol -trisphosphate 5-phosphatase isoform x5maker-scaffold631_size122145-snap-gene-0.43gene
type i restriction-modification system methyltransferase subunitsnap_masked-scaffold533_size145016-processed-gene-0.2gene
type iv pilus assemblymaker-scaffold1553_size35894-snap-gene-0.8gene
type iv pilus-associated proteinmaker-scaffold74_size411160-snap-gene-3.17gene
-type peptidyl-prolyl cis-trans isomerasemaker-scaffold4_size1398522-snap-gene-11.0gene
tyramine beta-hydroxylase-likemaker-scaffold661_size154698-snap-gene-0.21gene
tyramine octopamine receptor-likemaker-scaffold301_size216225-snap-gene-0.19gene
tyramine receptormaker-scaffold268_size230776-snap-gene-0.4gene
tyrosinase-like protein tyr-3maker-scaffold299_size217019-snap-gene-1.30gene
tyrosine aminotransferasemaker-scaffold322_size207131-snap-gene-1.15gene
tyrosine aminotransferase isoform x1maker-scaffold322_size207131-snap-gene-1.16gene

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Cross References
External references for this organism
DatabaseAccession
PMID28369352
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