EMLSAG00000001533, EMLSAG00000001533-684299 (gene) Lepeophtheirus salmonis
Overview
Associated RNAi Experiments
Nothing found Homology
BLAST of EMLSAG00000001533 vs. GO
Match: - (symbol:spp-3 species:6239 "Caenorhabditis elegans" [GO:0018991 "oviposition" evidence=IMP] Gene3D:1.10.225.10 InterPro:IPR008138 InterPro:IPR011001 InterPro:IPR008139 Pfam:PF03489 SMART:SM00741 SUPFAM:SSF47862 PROSITE:PS50015 EMBL:FO080414 RefSeq:NP_509235.2 UniGene:Cel.31314 ProteinModelPortal:Q22336 SMR:Q22336 STRING:6239.T08A9.7.2 PaxDb:Q22336 EnsemblMetazoa:T08A9.7.1 EnsemblMetazoa:T08A9.7.2 GeneID:180993 KEGG:cel:CELE_T08A9.7 UCSC:T08A9.7.2 CTD:180993 WormBase:T08A9.7 eggNOG:NOG236972 GeneTree:ENSGT00390000001295 HOGENOM:HOG000019308 InParanoid:Q22336 OMA:ECKKEFH NextBio:911898 Uniprot:Q22336) HSP 1 Score: 38.891 bits (89), Expect = 8.255e-4 Identity = 25/99 (25.25%), Postives = 46/99 (46.46%), Query Frame = 0 Query: 4 LLLVFFFTFVSANSVDKDSSKCAFCKKTIATVFEMLQNEENQQNIIDKLEKGCKQLETELPFLAEPCYDLLENVVKPQLGEAVENFPTPEEACHIINYC 102 + L FF+ AN ++ C CK ++ V ML E+ ++I ++ CK+ +PF + C ++ + P + E +EN P + C + C Sbjct: 10 VTLAVFFSSTEANGIE-----CEMCKMSVKIVVPMLG--EDTESIKKAVDAECKKEFHSIPFGTQECKKFIDTKLDPIIHE-LENGTAPSDVCTKLGMC 100
BLAST of EMLSAG00000001533 vs. C. finmarchicus
Match: gi|592766462|gb|GAXK01188106.1| (TSA: Calanus finmarchicus comp10792_c3_seq4 transcribed RNA sequence) HSP 1 Score: 39.6614 bits (91), Expect = 5.428e-4 Identity = 24/83 (28.92%), Postives = 41/83 (49.40%), Query Frame = 0 Query: 20 KDSSKCAFCKKTIATVFEMLQNEENQQNIIDKLEKGCKQLETELPFLAEPCYDLLENVVKPQLGEAVENFPTPEEACHIINYC 102 K S CA C+ I VF +L+++++Q + + LE C +L T + C +E + V+ F TP+E C ++ C Sbjct: 252 KSDSNCAMCEFAINEVFSILKDKDDQDMVKNALESICYRLPTS---VERTCESFVETYTASIINLIVQGF-TPDEVCSALDLC 488
BLAST of EMLSAG00000001533 vs. C. finmarchicus
Match: gi|592766464|gb|GAXK01188104.1| (TSA: Calanus finmarchicus comp10792_c3_seq2 transcribed RNA sequence) HSP 1 Score: 40.0466 bits (92), Expect = 5.734e-4 Identity = 24/83 (28.92%), Postives = 41/83 (49.40%), Query Frame = 0 Query: 20 KDSSKCAFCKKTIATVFEMLQNEENQQNIIDKLEKGCKQLETELPFLAEPCYDLLENVVKPQLGEAVENFPTPEEACHIINYC 102 K S CA C+ I VF +L+++++Q + + LE C +L T + C +E + V+ F TP+E C ++ C Sbjct: 252 KSDSNCAMCEFAINEVFSILKDKDDQDMVKNALESICYRLPTS---VERTCESFVETYTASIINLIVQGF-TPDEVCSALDLC 488
BLAST of EMLSAG00000001533 vs. C. finmarchicus
Match: gi|592766465|gb|GAXK01188103.1| (TSA: Calanus finmarchicus comp10792_c3_seq1 transcribed RNA sequence) HSP 1 Score: 39.6614 bits (91), Expect = 7.858e-4 Identity = 24/83 (28.92%), Postives = 41/83 (49.40%), Query Frame = 0 Query: 20 KDSSKCAFCKKTIATVFEMLQNEENQQNIIDKLEKGCKQLETELPFLAEPCYDLLENVVKPQLGEAVENFPTPEEACHIINYC 102 K S CA C+ I VF +L+++++Q + + LE C +L T + C +E + V+ F TP+E C ++ C Sbjct: 1173 KSDSNCAMCEFAINEVFSILKDKDDQDMVKNALESICYRLPTS---VERTCESFVETYTASIINLIVQGF-TPDEVCSALDLC 1409
BLAST of EMLSAG00000001533 vs. C. finmarchicus
Match: gi|592766461|gb|GAXK01188107.1| (TSA: Calanus finmarchicus comp10792_c6_seq1 transcribed RNA sequence) HSP 1 Score: 39.6614 bits (91), Expect = 7.998e-4 Identity = 24/83 (28.92%), Postives = 41/83 (49.40%), Query Frame = 0 Query: 20 KDSSKCAFCKKTIATVFEMLQNEENQQNIIDKLEKGCKQLETELPFLAEPCYDLLENVVKPQLGEAVENFPTPEEACHIINYC 102 K S CA C+ I VF +L+++++Q + + LE C +L T + C +E + V+ F TP+E C ++ C Sbjct: 1746 KSDSNCAMCEFAINEVFSILKDKDDQDMVKNALESICYRLPTS---VERTCESFVETYTASIINLIVQGF-TPDEVCSALDLC 1982
BLAST of EMLSAG00000001533 vs. C. finmarchicus
Match: gi|592766463|gb|GAXK01188105.1| (TSA: Calanus finmarchicus comp10792_c3_seq3 transcribed RNA sequence) HSP 1 Score: 39.2762 bits (90), Expect = 8.847e-4 Identity = 24/83 (28.92%), Postives = 41/83 (49.40%), Query Frame = 0 Query: 20 KDSSKCAFCKKTIATVFEMLQNEENQQNIIDKLEKGCKQLETELPFLAEPCYDLLENVVKPQLGEAVENFPTPEEACHIINYC 102 K S CA C+ I VF +L+++++Q + + LE C +L T + C +E + V+ F TP+E C ++ C Sbjct: 1173 KSDSNCAMCEFAINEVFSILKDKDDQDMVKNALESICYRLPTS---VERTCESFVETYTASIINLIVQGF-TPDEVCSALDLC 1409
BLAST of EMLSAG00000001533 vs. C. finmarchicus
Match: gi|592778538|gb|GAXK01176030.1| (TSA: Calanus finmarchicus comp2122_c0_seq1 transcribed RNA sequence) HSP 1 Score: 36.5798 bits (83), Expect = 3.676e-3 Identity = 22/78 (28.21%), Postives = 33/78 (42.31%), Query Frame = 0 Query: 25 CAFCKKTIATVFEMLQNEENQQNIIDKLEKGCKQLETELPFLAEPCYDLLENVVKPQLGEAVENFPTPEEACHIINYC 102 C C + + E L ++ + I+ +E C+ L LP L C DL+E + + VE P E C I C Sbjct: 113 CDICMDVVTDLDEWLTSDATEGEIVHFMESLCRSLGNILPDLEAMCIDLMEAQLPAIIDGLVEQNLNPTEVCVNIGAC 346
BLAST of EMLSAG00000001533 vs. C. finmarchicus
Match: gi|592762225|gb|GAXK01192188.1| (TSA: Calanus finmarchicus comp40403_c2_seq1 transcribed RNA sequence) HSP 1 Score: 36.5798 bits (83), Expect = 6.119e-3 Identity = 22/84 (26.19%), Postives = 38/84 (45.24%), Query Frame = 0 Query: 23 SKCAFCKKTIATVFEMLQNEENQQNIIDKLEKGCKQLETELPFLAEPCYDLLENVVKPQLGEAVENFPT----PEEACHIINYC 102 C CK+ + + E L + +Q+IID + C LPF P + + + ++GE +EN P+E C ++ C Sbjct: 135 GACDLCKQIVTAIDEFLTDGSTEQDIIDYVNGICDN----LPF---PLDTVCKTTLADKIGEIIENLVNNNLQPQEVCELLKLC 365
BLAST of EMLSAG00000001533 vs. C. finmarchicus
Match: gi|592854956|gb|GAXK01102588.1| (TSA: Calanus finmarchicus comp60716_c1_seq1 transcribed RNA sequence) HSP 1 Score: 31.9574 bits (71), Expect = 2.327e-1 Identity = 17/79 (21.52%), Postives = 36/79 (45.57%), Query Frame = 0 Query: 25 CAFCKKTIATV-FEMLQNEENQQNIIDKLEKGCKQLETELPFLAEPCYDLLENVVKPQLGEAVENFPTPEEACHIINYC 102 C C+ + +V ++ + ++I++ + C L E + C+DL+E ++ + V F P + C +N C Sbjct: 181 CFLCQIVVVSVEMAIIGDNVTMEHIVESVGYVCDTLGDEDSNIVSSCHDLVEEYLETIIDMIVVQFFQPFDVCTTLNMC 417
BLAST of EMLSAG00000001533 vs. C. finmarchicus
Match: gi|592865425|gb|GAXK01092137.1| (TSA: Calanus finmarchicus comp76089_c3_seq2 transcribed RNA sequence) HSP 1 Score: 30.8018 bits (68), Expect = 5.377e-1 Identity = 19/48 (39.58%), Postives = 28/48 (58.33%), Query Frame = 0 Query: 14 SANSVDKDSS--KCAFCKKTIATVFEM---LQNEENQQNIIDKLEKGC 56 S S+D DSS KC+FC + VFE+ LQ + N +N + L++ C Sbjct: 68 SPTSLDMDSSKFKCSFCMERFDIVFEVYEHLQEKHNMENNEEVLKQHC 211
BLAST of EMLSAG00000001533 vs. C. finmarchicus
Match: gi|592865418|gb|GAXK01092144.1| (TSA: Calanus finmarchicus comp76089_c4_seq4 transcribed RNA sequence) HSP 1 Score: 30.4166 bits (67), Expect = 7.395e-1 Identity = 19/48 (39.58%), Postives = 28/48 (58.33%), Query Frame = 0 Query: 14 SANSVDKDSS--KCAFCKKTIATVFEM---LQNEENQQNIIDKLEKGC 56 S S+D DSS KC+FC + VFE+ LQ + N +N + L++ C Sbjct: 238 SPTSLDMDSSKFKCSFCMERFDIVFEVYEHLQEKHNMENNEEVLKQHC 381
BLAST of EMLSAG00000001533 vs. L. salmonis peptides
Match: EMLSAP00000001533 (pep:novel supercontig:LSalAtl2s:LSalAtl2s1265:70293:71465:1 gene:EMLSAG00000001533 transcript:EMLSAT00000001533 description:"maker-LSalAtl2s1265-augustus-gene-0.8") HSP 1 Score: 206.838 bits (525), Expect = 6.087e-70 Identity = 102/102 (100.00%), Postives = 102/102 (100.00%), Query Frame = 0 Query: 1 MKFLLLVFFFTFVSANSVDKDSSKCAFCKKTIATVFEMLQNEENQQNIIDKLEKGCKQLETELPFLAEPCYDLLENVVKPQLGEAVENFPTPEEACHIINYC 102 MKFLLLVFFFTFVSANSVDKDSSKCAFCKKTIATVFEMLQNEENQQNIIDKLEKGCKQLETELPFLAEPCYDLLENVVKPQLGEAVENFPTPEEACHIINYC Sbjct: 1 MKFLLLVFFFTFVSANSVDKDSSKCAFCKKTIATVFEMLQNEENQQNIIDKLEKGCKQLETELPFLAEPCYDLLENVVKPQLGEAVENFPTPEEACHIINYC 102
BLAST of EMLSAG00000001533 vs. L. salmonis peptides
Match: EMLSAP00000008834 (pep:novel supercontig:LSalAtl2s:LSalAtl2s54:712754:713146:-1 gene:EMLSAG00000008834 transcript:EMLSAT00000008834 description:"maker-LSalAtl2s54-snap-gene-6.37") HSP 1 Score: 58.5362 bits (140), Expect = 2.467e-12 Identity = 33/107 (30.84%), Postives = 55/107 (51.40%), Query Frame = 0 Query: 1 MKFLLLVFFFTFVSANSV-----DKDSSKCAFCKKTIATVFEMLQNEENQQNIIDKLEKGCKQLETELPFLAEPCYDLLENVVKPQLGEAVENFPTPEEACHIINYC 102 M+ +L SA ++ ++ + KC FCK + + E + +EEN + +L++ C ++E FL E C +E VVKP++ + + PTPEEAC C Sbjct: 1 MRVFILCALIAVASATTIGEPKFNEKTMKCDFCKFVLGKINESVFSEENVDEALQQLDEICDKVEEVSGFLGETCDKFIEEVVKPKIEDLLATKPTPEEACKKFEMC 107
BLAST of EMLSAG00000001533 vs. L. salmonis peptides
Match: EMLSAP00000011320 (pep:novel supercontig:LSalAtl2s:LSalAtl2s780:164064:164683:1 gene:EMLSAG00000011320 transcript:EMLSAT00000011320 description:"maker-LSalAtl2s780-augustus-gene-1.14") HSP 1 Score: 57.3806 bits (137), Expect = 6.662e-12 Identity = 36/107 (33.64%), Postives = 51/107 (47.66%), Query Frame = 0 Query: 1 MKFLLLVFFFTFVSANSVDKD-----SSKCAFCKKTIATVFEMLQNEENQQNIIDKLEKGCKQLETELPFLAEPCYDLLENVVKPQLGEAVENFPTPEEACHIINYC 102 MKFL+L SA +V KD S KC FCK I E + +N I ++E+ C Q +T FL E C + +V+KP++ E + + PE C C Sbjct: 1 MKFLVLFALVAVASAGTVSKDQMIEKSXKCDFCKYIINHXNESVLTXDNADXAIKQVEEICAQAQTASSFLGETCTKFVNDVLKPKIEEILASKQEPETFCKDHQMC 107
BLAST of EMLSAG00000001533 vs. L. salmonis peptides
Match: EMLSAP00000001115 (pep:novel supercontig:LSalAtl2s:LSalAtl2s1186:244812:273376:-1 gene:EMLSAG00000001115 transcript:EMLSAT00000001115 description:"augustus_masked-LSalAtl2s1186-processed-gene-1.12") HSP 1 Score: 57.7658 bits (138), Expect = 4.660e-11 Identity = 32/104 (30.77%), Postives = 52/104 (50.00%), Query Frame = 0 Query: 1 MKFLLLVFFFTFVSANSVDKD-----SSKCAFCKKTIATVFEMLQNEENQQNIIDKLEKGCKQLETELPFLAEPCYDLLENVVKPQLGEAVENFPTPEEACHII 99 M+FL L SA +V KD S KC CK I V E + ++N +I+++E+ C Q + FL E C + +V+KP++ + + PE+ +I Sbjct: 4 MRFLALFALVAVASAATVSKDQMIEKSVKCDLCKYLITKVNESVLTQDNADQVIEEVEEICAQAQEVSSFLGETCTRFVNDVLKPKIEDLLAGKQEPEKIVALI 107
BLAST of EMLSAG00000001533 vs. L. salmonis peptides
Match: EMLSAP00000011667 (pep:novel supercontig:LSalAtl2s:LSalAtl2s80:923664:924312:1 gene:EMLSAG00000011667 transcript:EMLSAT00000011667 description:"maker-LSalAtl2s80-augustus-gene-9.25") HSP 1 Score: 46.2098 bits (108), Expect = 4.654e-8 Identity = 31/106 (29.25%), Postives = 45/106 (42.45%), Query Frame = 0 Query: 1 MKFLLLVFFFTFVSANSV----DKDSSKCAFCKKTIATVFEMLQNEENQQNIIDKLEKGCKQLETELPFLAEPCYDLLENVVKPQLGEAVENFPTPEEACHIINYC 102 MKF L+ F V NSV ++ C CK + + + I+D L+ CK P + CY + NVVKPQL + + P+ C + YC Sbjct: 1 MKFFLM-FATLIVVCNSVSLPVEEKLDNCKLCKFIFKKINNAIADGLGVDKIVDTLKIECKIFFMYRPKWEKKCYAFVNNVVKPQLEGFMGHIAPPKRTCRFLGYC 105
BLAST of EMLSAG00000001533 vs. L. salmonis peptides
Match: EMLSAP00000000730 (pep:novel supercontig:LSalAtl2s:LSalAtl2s1117:123079:123572:-1 gene:EMLSAG00000000730 transcript:EMLSAT00000000730 description:"maker-LSalAtl2s1117-augustus-gene-1.22") HSP 1 Score: 46.2098 bits (108), Expect = 6.967e-8 Identity = 30/106 (28.30%), Postives = 49/106 (46.23%), Query Frame = 0 Query: 1 MKFLLLVFFFTFVSANSV----DKDSSKCAFCKKTIATVFEMLQNEENQQNIIDKLEKGCKQLETELPFLAEPCYDLLENVVKPQLGEAVENFPTPEEACHIINYC 102 MKF+L+ F V NSV ++ C C+ V + + I+D ++ CK P + CY ++NVVKPQL + + P++ C ++ YC Sbjct: 37 MKFVLM-FATVIVVCNSVSIPVEEKLDNCKLCEFIFKKVNAAIADGLGVGKIVDTMKIECKIFFMYRPKWEKKCYAFVDNVVKPQLEGLMGHIVPPKQTCRLLGYC 141 The following BLAST results are available for this feature:
BLAST of EMLSAG00000001533 vs. GO
Analysis Date: 2014-04-02 (Blast vs. GO) Total hits: 1
BLAST of EMLSAG00000001533 vs. C. finmarchicus
Analysis Date: 2014-05-09 (TblastN vs C. finmarchicus TSA) Total hits: 17
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BLAST of EMLSAG00000001533 vs. L. salmonis peptides
Analysis Date: 2014-05-10 (Blastp vs. self) Total hits: 6
BLAST of EMLSAG00000001533 vs. SwissProt
Analysis Date: 2017-02-10 (Blastp vs. SwissProt) Total hits: 0
BLAST of EMLSAG00000001533 vs. Select Arthropod Genomes
Analysis Date: 2017-02-20 (Blastp vs. Selected Arthropods) Total hits: 0
BLAST of EMLSAG00000001533 vs. nr
Analysis Date: 2017-02-20 (Blastp vs. NR (2/2017)) Total hits: 0
BLAST of EMLSAG00000001533 vs. Tigriopus kingsejongenis genes
Analysis Date: 2018-04-18 (Blastp vs. Tigriopus kingsejongensis proteins) Total hits: 0
Alignments
The following features are aligned
Analyses
This gene is derived from or has results from the following analyses
Properties
Cross References
External references for this gene
Relationships
The following mRNA feature(s) are a part of this gene:
Sequences
The following sequences are available for this feature:
gene from alignment at LSalAtl2s1265:70293..71465+ Legend: mRNA Hold the cursor over a type above to highlight its positions in the sequence below.>EMLSAG00000001533-684299 ID=EMLSAG00000001533-684299|Name=EMLSAG00000001533|organism=Lepeophtheirus salmonis|type=gene|length=1173bp|location=Sequence derived from alignment at LSalAtl2s1265:70293..71465+ (Lepeophtheirus salmonis)back to top Add to Basket
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