EMLSAG00000002948, EMLSAG00000002948-685714 (gene) Lepeophtheirus salmonis
Overview
Associated RNAi Experiments
Nothing found Homology
BLAST of EMLSAG00000002948 vs. C. finmarchicus
Match: gi|592885185|gb|GAXK01073190.1| (TSA: Calanus finmarchicus comp149408_c0_seq1 transcribed RNA sequence) HSP 1 Score: 37.7354 bits (86), Expect = 6.006e-3 Identity = 27/117 (23.08%), Postives = 59/117 (50.43%), Query Frame = 0 Query: 19 STCPDEFSNASFLSNPTRMELLMSRAQTLVEGSNELNKNEYEMLAALKNTLLSSVHDLVNALEEEITKIQELRCN-TIKHAFEAIQERFHSMQPDENELKNFSSELQYFIDGINSSL 134 ++ P + +F S P+ E+L ++A+ ++ N+ + + + L +K + + ++ LEE++ K Q +R N ++ I + ++ E ELKNFS+ L F+ + + Sbjct: 37 ASVPTAEAEMTFNSVPSGREVLTAKAEKVISEYNKCVEEDEKQLEEIKKAVQNMSEMMIRTLEEKMYKKQ-MRMNEKMQEILLEINTKLEDLEGQEEELKNFSAGLAMFMGDLKGGV 384
BLAST of EMLSAG00000002948 vs. C. finmarchicus
Match: gi|592832657|gb|GAXK01124887.1| (TSA: Calanus finmarchicus comp24710_c6_seq1 transcribed RNA sequence) HSP 1 Score: 30.0314 bits (66), Expect = 2.885e+0 Identity = 16/47 (34.04%), Postives = 25/47 (53.19%), Query Frame = 0 Query: 7 FCNLDVKPNQSYSTCPDEFSNASFLSNPTRMELLMSRAQTLVEGSNE 53 +C+ PN S+S + FS++ F +N T LMS + +V S E Sbjct: 306 WCSFLSSPNASFSVLEEAFSDSVFSTNFTSFAYLMSVSTLIVVSSEE 446
BLAST of EMLSAG00000002948 vs. L. salmonis peptides
Match: EMLSAP00000002948 (pep:novel supercontig:LSalAtl2s:LSalAtl2s1696:22493:22980:-1 gene:EMLSAG00000002948 transcript:EMLSAT00000002948 description:"maker-LSalAtl2s1696-augustus-gene-0.5") HSP 1 Score: 291.197 bits (744), Expect = 5.654e-102 Identity = 142/142 (100.00%), Postives = 142/142 (100.00%), Query Frame = 0 Query: 1 MTNKNFFCNLDVKPNQSYSTCPDEFSNASFLSNPTRMELLMSRAQTLVEGSNELNKNEYEMLAALKNTLLSSVHDLVNALEEEITKIQELRCNTIKHAFEAIQERFHSMQPDENELKNFSSELQYFIDGINSSLDCVSNKKY 142 MTNKNFFCNLDVKPNQSYSTCPDEFSNASFLSNPTRMELLMSRAQTLVEGSNELNKNEYEMLAALKNTLLSSVHDLVNALEEEITKIQELRCNTIKHAFEAIQERFHSMQPDENELKNFSSELQYFIDGINSSLDCVSNKKY Sbjct: 1 MTNKNFFCNLDVKPNQSYSTCPDEFSNASFLSNPTRMELLMSRAQTLVEGSNELNKNEYEMLAALKNTLLSSVHDLVNALEEEITKIQELRCNTIKHAFEAIQERFHSMQPDENELKNFSSELQYFIDGINSSLDCVSNKKY 142
BLAST of EMLSAG00000002948 vs. L. salmonis peptides
Match: EMLSAP00000011944 (pep:novel supercontig:LSalAtl2s:LSalAtl2s846:177909:178785:1 gene:EMLSAG00000011944 transcript:EMLSAT00000011944 description:"maker-LSalAtl2s846-augustus-gene-0.6") HSP 1 Score: 188.348 bits (477), Expect = 1.634e-61 Identity = 89/139 (64.03%), Postives = 114/139 (82.01%), Query Frame = 0 Query: 3 NKNFFCNLDVKPNQSYSTCPDEFSNASFLSNPTRMELLMSRAQTLVEGSNELNKNEYEMLAALKNTLLSSVHDLVNALEEEITKIQELRCNTIKHAFEAIQERFHSMQPDENELKNFSSELQYFIDGINSSLDCVSNKK 141 ++ CNLD+K NQSYS CPDEF NASFLS+PTRMELLM+R QTLV+ SNEL+KNE EML AL++TLL V ++++A+E EITK Q+LRCNTIKHA + IQ+RFHS++PDE+EL+ FSSELQ FI I++ DCV ++ Sbjct: 2 SRGIDCNLDMKLNQSYSACPDEFGNASFLSSPTRMELLMTRVQTLVQQSNELSKNEMEMLQALRSTLLFCVEEMISAIEAEITKNQDLRCNTIKHAQKIIQDRFHSIKPDEDELQGFSSELQLFIQDIDTFQDCVPGRR 140
BLAST of EMLSAG00000002948 vs. L. salmonis peptides
Match: EMLSAP00000000699 (pep:novel supercontig:LSalAtl2s:LSalAtl2s110:56299:56785:-1 gene:EMLSAG00000000699 transcript:EMLSAT00000000699 description:"maker-LSalAtl2s110-augustus-gene-0.3") HSP 1 Score: 187.963 bits (476), Expect = 2.076e-61 Identity = 89/139 (64.03%), Postives = 113/139 (81.29%), Query Frame = 0 Query: 3 NKNFFCNLDVKPNQSYSTCPDEFSNASFLSNPTRMELLMSRAQTLVEGSNELNKNEYEMLAALKNTLLSSVHDLVNALEEEITKIQELRCNTIKHAFEAIQERFHSMQPDENELKNFSSELQYFIDGINSSLDCVSNKK 141 ++ CNLD+K NQSYS CPDEF NASFLS+PTRMELLM+R QTLV+ SNEL+KNE EML AL+ TLL SV ++++A+E EITK Q+LRCNTIKHA + IQ+RF S++PDE+EL+ FSSELQ FI I++ DCV ++ Sbjct: 2 SRGMDCNLDMKLNQSYSACPDEFGNASFLSSPTRMELLMTRVQTLVQQSNELSKNEMEMLKALRATLLYSVEEMISAIEAEITKNQDLRCNTIKHAQQIIQDRFRSIKPDEDELQGFSSELQLFIQDIDTFQDCVPGRR 140
BLAST of EMLSAG00000002948 vs. L. salmonis peptides
Match: EMLSAP00000001316 (pep:novel supercontig:LSalAtl2s:LSalAtl2s1222:82149:82639:-1 gene:EMLSAG00000001316 transcript:EMLSAT00000001316 description:"maker-LSalAtl2s1222-augustus-gene-0.7") HSP 1 Score: 187.578 bits (475), Expect = 3.856e-61 Identity = 89/139 (64.03%), Postives = 113/139 (81.29%), Query Frame = 0 Query: 3 NKNFFCNLDVKPNQSYSTCPDEFSNASFLSNPTRMELLMSRAQTLVEGSNELNKNEYEMLAALKNTLLSSVHDLVNALEEEITKIQELRCNTIKHAFEAIQERFHSMQPDENELKNFSSELQYFIDGINSSLDCVSNKK 141 ++ CNLD+K NQSYS CPDEF NASFLSNPTR+ELLMSR QTLV+ SNEL+KNE EML AL+ TL+S V +++ A+E EITK Q+LRCNTIK+A + IQ+RFHS++PDE+ELK FSSELQ FI +++ DCV ++ Sbjct: 2 SRGMSCNLDLKLNQSYSQCPDEFGNASFLSNPTRLELLMSRVQTLVQQSNELSKNEMEMLQALRATLISCVEEMIAAIEAEITKNQDLRCNTIKNAQKIIQDRFHSIKPDEDELKGFSSELQLFIRDVDTFQDCVPGRR 140
BLAST of EMLSAG00000002948 vs. L. salmonis peptides
Match: EMLSAP00000001584 (pep:novel supercontig:LSalAtl2s:LSalAtl2s1274:95760:96281:-1 gene:EMLSAG00000001584 transcript:EMLSAT00000001584 description:"maker-LSalAtl2s1274-augustus-gene-0.24") HSP 1 Score: 183.726 bits (465), Expect = 1.422e-59 Identity = 86/134 (64.18%), Postives = 111/134 (82.84%), Query Frame = 0 Query: 8 CNLDVKPNQSYSTCPDEFSNASFLSNPTRMELLMSRAQTLVEGSNELNKNEYEMLAALKNTLLSSVHDLVNALEEEITKIQELRCNTIKHAFEAIQERFHSMQPDENELKNFSSELQYFIDGINSSLDCVSNKK 141 CNLD+K +QSYS CPDEF NASFLS+PTR+ELLM+RAQ+LV SNEL+KNE EM+ ALK+TL+S V D+++++E E+TK Q+LRCNTIKH E IQ+RFHS++PDE+ELK FSSELQ F I++ DCV ++ Sbjct: 18 CNLDMKLDQSYSACPDEFGNASFLSSPTRLELLMTRAQSLVNQSNELSKNEMEMIQALKSTLVSCVEDMISSIETEMTKNQDLRCNTIKHVQEIIQDRFHSIKPDEDELKGFSSELQLFFHDIDTFQDCVPGRR 151
BLAST of EMLSAG00000002948 vs. L. salmonis peptides
Match: EMLSAP00000002108 (pep:novel supercontig:LSalAtl2s:LSalAtl2s1398:446:3406:1 gene:EMLSAG00000002108 transcript:EMLSAT00000002108 description:"maker-LSalAtl2s1398-augustus-gene-0.8") HSP 1 Score: 116.701 bits (291), Expect = 1.425e-33 Identity = 56/126 (44.44%), Postives = 88/126 (69.84%), Query Frame = 0 Query: 18 YSTCPDEFSNASFLSNPTRMELLM-SRAQTLVEGSNELNKNEYEMLAALKNTLLSSVHDLVNALEEEITKIQELRCNTIKHAFEAIQERFHSMQPDENELKNFSSELQYFIDGINSSLDCVSNKKY 142 Y +C D+F N+ FLS+PT+ E++M + LV+ SNEL+KNE EM+ AL+N+L+ SV L+ +L+ +I +IQ +RC+ +K +Q F+ Q DE EL+ F++ELQYF++ IN L+C+S K + Sbjct: 17 YGSCQDKFVNSFFLSSPTKSEIMMFPKIHKLVDQSNELSKNEIEMINALRNSLVESVRQLITSLKSQIAEIQSMRCHRLKKVLNFMQNLFYIGQSDETELQEFATELQYFVNEINIELECLSRKTH 142 The following BLAST results are available for this feature:
BLAST of EMLSAG00000002948 vs. GO
Analysis Date: 2014-04-02 (Blast vs. GO) Total hits: 0
BLAST of EMLSAG00000002948 vs. C. finmarchicus
Analysis Date: 2014-05-09 (TblastN vs C. finmarchicus TSA) Total hits: 2
BLAST of EMLSAG00000002948 vs. L. salmonis peptides
Analysis Date: 2014-05-10 (Blastp vs. self) Total hits: 6
BLAST of EMLSAG00000002948 vs. SwissProt
Analysis Date: 2017-02-10 (Blastp vs. SwissProt) Total hits: 0
BLAST of EMLSAG00000002948 vs. Select Arthropod Genomes
Analysis Date: 2017-02-20 (Blastp vs. Selected Arthropods) Total hits: 0
BLAST of EMLSAG00000002948 vs. nr
Analysis Date: 2017-02-20 (Blastp vs. NR (2/2017)) Total hits: 0
BLAST of EMLSAG00000002948 vs. Tigriopus kingsejongenis genes
Analysis Date: 2018-04-18 (Blastp vs. Tigriopus kingsejongensis proteins) Total hits: 0
Alignments
The following features are aligned
Analyses
This gene is derived from or has results from the following analyses
Properties
Cross References
External references for this gene
Relationships
The following mRNA feature(s) are a part of this gene:
Sequences
The following sequences are available for this feature:
gene from alignment at LSalAtl2s1696:22493..22980- Legend: mRNA Hold the cursor over a type above to highlight its positions in the sequence below.>EMLSAG00000002948-685714 ID=EMLSAG00000002948-685714|Name=EMLSAG00000002948|organism=Lepeophtheirus salmonis|type=gene|length=488bp|location=Sequence derived from alignment at LSalAtl2s1696:22493..22980- (Lepeophtheirus salmonis)back to top Add to Basket
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