EMLSAG00000002948, EMLSAG00000002948-685714 (gene) Lepeophtheirus salmonis

Overview
NameEMLSAG00000002948
Unique NameEMLSAG00000002948-685714
Typegene
OrganismLepeophtheirus salmonis (salmon louse)
Associated RNAi Experiments

Nothing found

Homology
BLAST of EMLSAG00000002948 vs. C. finmarchicus
Match: gi|592885185|gb|GAXK01073190.1| (TSA: Calanus finmarchicus comp149408_c0_seq1 transcribed RNA sequence)

HSP 1 Score: 37.7354 bits (86), Expect = 6.006e-3
Identity = 27/117 (23.08%), Postives = 59/117 (50.43%), Query Frame = 0
Query:   19 STCPDEFSNASFLSNPTRMELLMSRAQTLVEGSNELNKNEYEMLAALKNTLLSSVHDLVNALEEEITKIQELRCN-TIKHAFEAIQERFHSMQPDENELKNFSSELQYFIDGINSSL 134
            ++ P   +  +F S P+  E+L ++A+ ++   N+  + + + L  +K  + +    ++  LEE++ K Q +R N  ++     I  +   ++  E ELKNFS+ L  F+  +   +
Sbjct:   37 ASVPTAEAEMTFNSVPSGREVLTAKAEKVISEYNKCVEEDEKQLEEIKKAVQNMSEMMIRTLEEKMYKKQ-MRMNEKMQEILLEINTKLEDLEGQEEELKNFSAGLAMFMGDLKGGV 384          
BLAST of EMLSAG00000002948 vs. C. finmarchicus
Match: gi|592832657|gb|GAXK01124887.1| (TSA: Calanus finmarchicus comp24710_c6_seq1 transcribed RNA sequence)

HSP 1 Score: 30.0314 bits (66), Expect = 2.885e+0
Identity = 16/47 (34.04%), Postives = 25/47 (53.19%), Query Frame = 0
Query:    7 FCNLDVKPNQSYSTCPDEFSNASFLSNPTRMELLMSRAQTLVEGSNE 53
            +C+    PN S+S   + FS++ F +N T    LMS +  +V  S E
Sbjct:  306 WCSFLSSPNASFSVLEEAFSDSVFSTNFTSFAYLMSVSTLIVVSSEE 446          
BLAST of EMLSAG00000002948 vs. L. salmonis peptides
Match: EMLSAP00000002948 (pep:novel supercontig:LSalAtl2s:LSalAtl2s1696:22493:22980:-1 gene:EMLSAG00000002948 transcript:EMLSAT00000002948 description:"maker-LSalAtl2s1696-augustus-gene-0.5")

HSP 1 Score: 291.197 bits (744), Expect = 5.654e-102
Identity = 142/142 (100.00%), Postives = 142/142 (100.00%), Query Frame = 0
Query:    1 MTNKNFFCNLDVKPNQSYSTCPDEFSNASFLSNPTRMELLMSRAQTLVEGSNELNKNEYEMLAALKNTLLSSVHDLVNALEEEITKIQELRCNTIKHAFEAIQERFHSMQPDENELKNFSSELQYFIDGINSSLDCVSNKKY 142
            MTNKNFFCNLDVKPNQSYSTCPDEFSNASFLSNPTRMELLMSRAQTLVEGSNELNKNEYEMLAALKNTLLSSVHDLVNALEEEITKIQELRCNTIKHAFEAIQERFHSMQPDENELKNFSSELQYFIDGINSSLDCVSNKKY
Sbjct:    1 MTNKNFFCNLDVKPNQSYSTCPDEFSNASFLSNPTRMELLMSRAQTLVEGSNELNKNEYEMLAALKNTLLSSVHDLVNALEEEITKIQELRCNTIKHAFEAIQERFHSMQPDENELKNFSSELQYFIDGINSSLDCVSNKKY 142          
BLAST of EMLSAG00000002948 vs. L. salmonis peptides
Match: EMLSAP00000011944 (pep:novel supercontig:LSalAtl2s:LSalAtl2s846:177909:178785:1 gene:EMLSAG00000011944 transcript:EMLSAT00000011944 description:"maker-LSalAtl2s846-augustus-gene-0.6")

HSP 1 Score: 188.348 bits (477), Expect = 1.634e-61
Identity = 89/139 (64.03%), Postives = 114/139 (82.01%), Query Frame = 0
Query:    3 NKNFFCNLDVKPNQSYSTCPDEFSNASFLSNPTRMELLMSRAQTLVEGSNELNKNEYEMLAALKNTLLSSVHDLVNALEEEITKIQELRCNTIKHAFEAIQERFHSMQPDENELKNFSSELQYFIDGINSSLDCVSNKK 141
            ++   CNLD+K NQSYS CPDEF NASFLS+PTRMELLM+R QTLV+ SNEL+KNE EML AL++TLL  V ++++A+E EITK Q+LRCNTIKHA + IQ+RFHS++PDE+EL+ FSSELQ FI  I++  DCV  ++
Sbjct:    2 SRGIDCNLDMKLNQSYSACPDEFGNASFLSSPTRMELLMTRVQTLVQQSNELSKNEMEMLQALRSTLLFCVEEMISAIEAEITKNQDLRCNTIKHAQKIIQDRFHSIKPDEDELQGFSSELQLFIQDIDTFQDCVPGRR 140          
BLAST of EMLSAG00000002948 vs. L. salmonis peptides
Match: EMLSAP00000000699 (pep:novel supercontig:LSalAtl2s:LSalAtl2s110:56299:56785:-1 gene:EMLSAG00000000699 transcript:EMLSAT00000000699 description:"maker-LSalAtl2s110-augustus-gene-0.3")

HSP 1 Score: 187.963 bits (476), Expect = 2.076e-61
Identity = 89/139 (64.03%), Postives = 113/139 (81.29%), Query Frame = 0
Query:    3 NKNFFCNLDVKPNQSYSTCPDEFSNASFLSNPTRMELLMSRAQTLVEGSNELNKNEYEMLAALKNTLLSSVHDLVNALEEEITKIQELRCNTIKHAFEAIQERFHSMQPDENELKNFSSELQYFIDGINSSLDCVSNKK 141
            ++   CNLD+K NQSYS CPDEF NASFLS+PTRMELLM+R QTLV+ SNEL+KNE EML AL+ TLL SV ++++A+E EITK Q+LRCNTIKHA + IQ+RF S++PDE+EL+ FSSELQ FI  I++  DCV  ++
Sbjct:    2 SRGMDCNLDMKLNQSYSACPDEFGNASFLSSPTRMELLMTRVQTLVQQSNELSKNEMEMLKALRATLLYSVEEMISAIEAEITKNQDLRCNTIKHAQQIIQDRFRSIKPDEDELQGFSSELQLFIQDIDTFQDCVPGRR 140          
BLAST of EMLSAG00000002948 vs. L. salmonis peptides
Match: EMLSAP00000001316 (pep:novel supercontig:LSalAtl2s:LSalAtl2s1222:82149:82639:-1 gene:EMLSAG00000001316 transcript:EMLSAT00000001316 description:"maker-LSalAtl2s1222-augustus-gene-0.7")

HSP 1 Score: 187.578 bits (475), Expect = 3.856e-61
Identity = 89/139 (64.03%), Postives = 113/139 (81.29%), Query Frame = 0
Query:    3 NKNFFCNLDVKPNQSYSTCPDEFSNASFLSNPTRMELLMSRAQTLVEGSNELNKNEYEMLAALKNTLLSSVHDLVNALEEEITKIQELRCNTIKHAFEAIQERFHSMQPDENELKNFSSELQYFIDGINSSLDCVSNKK 141
            ++   CNLD+K NQSYS CPDEF NASFLSNPTR+ELLMSR QTLV+ SNEL+KNE EML AL+ TL+S V +++ A+E EITK Q+LRCNTIK+A + IQ+RFHS++PDE+ELK FSSELQ FI  +++  DCV  ++
Sbjct:    2 SRGMSCNLDLKLNQSYSQCPDEFGNASFLSNPTRLELLMSRVQTLVQQSNELSKNEMEMLQALRATLISCVEEMIAAIEAEITKNQDLRCNTIKNAQKIIQDRFHSIKPDEDELKGFSSELQLFIRDVDTFQDCVPGRR 140          
BLAST of EMLSAG00000002948 vs. L. salmonis peptides
Match: EMLSAP00000001584 (pep:novel supercontig:LSalAtl2s:LSalAtl2s1274:95760:96281:-1 gene:EMLSAG00000001584 transcript:EMLSAT00000001584 description:"maker-LSalAtl2s1274-augustus-gene-0.24")

HSP 1 Score: 183.726 bits (465), Expect = 1.422e-59
Identity = 86/134 (64.18%), Postives = 111/134 (82.84%), Query Frame = 0
Query:    8 CNLDVKPNQSYSTCPDEFSNASFLSNPTRMELLMSRAQTLVEGSNELNKNEYEMLAALKNTLLSSVHDLVNALEEEITKIQELRCNTIKHAFEAIQERFHSMQPDENELKNFSSELQYFIDGINSSLDCVSNKK 141
            CNLD+K +QSYS CPDEF NASFLS+PTR+ELLM+RAQ+LV  SNEL+KNE EM+ ALK+TL+S V D+++++E E+TK Q+LRCNTIKH  E IQ+RFHS++PDE+ELK FSSELQ F   I++  DCV  ++
Sbjct:   18 CNLDMKLDQSYSACPDEFGNASFLSSPTRLELLMTRAQSLVNQSNELSKNEMEMIQALKSTLVSCVEDMISSIETEMTKNQDLRCNTIKHVQEIIQDRFHSIKPDEDELKGFSSELQLFFHDIDTFQDCVPGRR 151          
BLAST of EMLSAG00000002948 vs. L. salmonis peptides
Match: EMLSAP00000002108 (pep:novel supercontig:LSalAtl2s:LSalAtl2s1398:446:3406:1 gene:EMLSAG00000002108 transcript:EMLSAT00000002108 description:"maker-LSalAtl2s1398-augustus-gene-0.8")

HSP 1 Score: 116.701 bits (291), Expect = 1.425e-33
Identity = 56/126 (44.44%), Postives = 88/126 (69.84%), Query Frame = 0
Query:   18 YSTCPDEFSNASFLSNPTRMELLM-SRAQTLVEGSNELNKNEYEMLAALKNTLLSSVHDLVNALEEEITKIQELRCNTIKHAFEAIQERFHSMQPDENELKNFSSELQYFIDGINSSLDCVSNKKY 142
            Y +C D+F N+ FLS+PT+ E++M  +   LV+ SNEL+KNE EM+ AL+N+L+ SV  L+ +L+ +I +IQ +RC+ +K     +Q  F+  Q DE EL+ F++ELQYF++ IN  L+C+S K +
Sbjct:   17 YGSCQDKFVNSFFLSSPTKSEIMMFPKIHKLVDQSNELSKNEIEMINALRNSLVESVRQLITSLKSQIAEIQSMRCHRLKKVLNFMQNLFYIGQSDETELQEFATELQYFVNEINIELECLSRKTH 142          
The following BLAST results are available for this feature:
BLAST of EMLSAG00000002948 vs. GO
Analysis Date: 2014-04-02 (Blast vs. GO)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000002948 vs. C. finmarchicus
Analysis Date: 2014-05-09 (TblastN vs C. finmarchicus TSA)
Total hits: 2
Match NameE-valueIdentityDescription
gi|592885185|gb|GAXK01073190.1|6.006e-323.08TSA: Calanus finmarchicus comp149408_c0_seq1 trans... [more]
gi|592832657|gb|GAXK01124887.1|2.885e+034.04TSA: Calanus finmarchicus comp24710_c6_seq1 transc... [more]
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BLAST of EMLSAG00000002948 vs. L. salmonis peptides
Analysis Date: 2014-05-10 (Blastp vs. self)
Total hits: 6
Match NameE-valueIdentityDescription
EMLSAP000000029485.654e-102100.00pep:novel supercontig:LSalAtl2s:LSalAtl2s1696:2249... [more]
EMLSAP000000119441.634e-6164.03pep:novel supercontig:LSalAtl2s:LSalAtl2s846:17790... [more]
EMLSAP000000006992.076e-6164.03pep:novel supercontig:LSalAtl2s:LSalAtl2s110:56299... [more]
EMLSAP000000013163.856e-6164.03pep:novel supercontig:LSalAtl2s:LSalAtl2s1222:8214... [more]
EMLSAP000000015841.422e-5964.18pep:novel supercontig:LSalAtl2s:LSalAtl2s1274:9576... [more]
EMLSAP000000021081.425e-3344.44pep:novel supercontig:LSalAtl2s:LSalAtl2s1398:446:... [more]
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BLAST of EMLSAG00000002948 vs. SwissProt
Analysis Date: 2017-02-10 (Blastp vs. SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000002948 vs. Select Arthropod Genomes
Analysis Date: 2017-02-20 (Blastp vs. Selected Arthropods)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000002948 vs. nr
Analysis Date: 2017-02-20 (Blastp vs. NR (2/2017))
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000002948 vs. Tigriopus kingsejongenis genes
Analysis Date: 2018-04-18 (Blastp vs. Tigriopus kingsejongensis proteins)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
LSalAtl2s1696supercontigLSalAtl2s1696:22493..22980 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
ensembl2013-09-26 .965016
Blast vs. GO2014-04-02
TblastN vs C. finmarchicus TSA2014-05-09
Blastp vs. self2014-05-10
Blastp vs. SwissProt2017-02-10
Blastp vs. Selected Arthropods2017-02-20
Blastp vs. NR (2/2017)2017-02-20
Blastp vs. Tigriopus kingsejongensis proteins2018-04-18
Properties
Property NameValue
Logic nameensemblgenomes
Descriptionmaker-LSalAtl2s1696-augustus-gene-0.5
Biotypeprotein_coding
EvidenceIEA
NoteHypothetical protein
Cross References
External references for this gene
DatabaseAccession
Ensembl Metazoa (gene)EMLSAG00000002948 (primary cross-reference)
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
EMLSAT00000002948EMLSAT00000002948-698795Lepeophtheirus salmonismRNA


Sequences
The following sequences are available for this feature:

gene from alignment at LSalAtl2s1696:22493..22980-

Legend: mRNA
Hold the cursor over a type above to highlight its positions in the sequence below.
>EMLSAG00000002948-685714 ID=EMLSAG00000002948-685714|Name=EMLSAG00000002948|organism=Lepeophtheirus salmonis|type=gene|length=488bp|location=Sequence derived from alignment at LSalAtl2s1696:22493..22980- (Lepeophtheirus salmonis)
ATGACGAATAAGAATTTCTTTTGTAACCTGGATGTGAAGCCAAATCAATC GTACTCCACTTGTCCGGATGAGTTTTCCAACGCTTCTTTTTTAAGTAATC CGACAAGAATGGAATTGCTTATGAGTCGTGCTCAAACTCTCGTCGAAGGT TCCAATGAACTCAATAAAAATGTATATTTTCATCAACTATAAATTATAAA CAGTCNTTAATTGTTTAATCTTATAATTAGGAATATGAAATGTTAGCAGC GCTTAAGAATACATTGTTGTCAAGTGTACATGATTTAGTCAACGCATTAG AGGAGGAAATAACAAAAATCCAAGAGCTAAGATGCAACACTATCAAACAT GCTTTTGAAGCCATACAAGAGAGATTTCATTCAATGCAACCGGATGAAAA CGAGCTCAAGAATTTTTCATCGGAGCTTCAATACTTCATTGATGGAATCA ATTCATCACTTGATTGTGTTTCAAATAAAAAATACTAA
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