EMLSAG00000003562, EMLSAG00000003562-686328 (gene) Lepeophtheirus salmonis

Overview
NameEMLSAG00000003562
Unique NameEMLSAG00000003562-686328
Typegene
OrganismLepeophtheirus salmonis (salmon louse)
Associated RNAi Experiments

Nothing found

Homology
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BLAST of EMLSAG00000003562 vs. C. finmarchicus
Match: gi|592916106|gb|GAXK01042269.1| (TSA: Calanus finmarchicus comp299868_c0_seq1 transcribed RNA sequence)

HSP 1 Score: 39.6614 bits (91), Expect = 2.797e-3
Identity = 20/56 (35.71%), Postives = 26/56 (46.43%), Query Frame = 0 
Query:   45 RECQFPIIIGNTSISMCISIGLGDGVYFCPVHTLPDGMATPDSLSVLGICKPDCPR 100
            R CQFP I G  S + CIS    +G+++C      DG+           C P CPR
Sbjct: 2650 RPCQFPFIFGGVSRTGCISDSDPEGLFWCSTSVDSDGVHMGQG-GHWAHCSPSCPR 2814
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BLAST of EMLSAG00000003562 vs. C. finmarchicus
Match: gi|592853505|gb|GAXK01104039.1| (TSA: Calanus finmarchicus comp271928_c0_seq6 transcribed RNA sequence)

HSP 1 Score: 33.4982 bits (75), Expect = 2.781e-1
Identity = 20/67 (29.85%), Postives = 29/67 (43.28%), Query Frame = 0 
Query:   37 ERCLTVDDRECQFPIIIGNTSISMCISIGLGDGVYFCPVHTLPDGMATPDSLSVLGICKPDCPRLIP 103
            + C T +  EC FP I  +T    C S+     VY     T  +G      +   G+C  DCP ++P
Sbjct: 3635 QSCYTQEGNECVFPFIYKDTEYFNCTSV----DVYQPWCATEMNGT----RIEAWGLCLQDCPYMVP 3811
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BLAST of EMLSAG00000003562 vs. C. finmarchicus
Match: gi|592853498|gb|GAXK01104046.1| (TSA: Calanus finmarchicus comp271928_c0_seq13 transcribed RNA sequence)

HSP 1 Score: 33.4982 bits (75), Expect = 2.828e-1
Identity = 20/67 (29.85%), Postives = 29/67 (43.28%), Query Frame = 0 
Query:   37 ERCLTVDDRECQFPIIIGNTSISMCISIGLGDGVYFCPVHTLPDGMATPDSLSVLGICKPDCPRLIP 103
            + C T +  EC FP I  +T    C S+     VY     T  +G      +   G+C  DCP ++P
Sbjct: 1033 QSCYTQEGNECVFPFIYKDTEYFNCTSV----DVYQPWCATEMNGT----RIEAWGLCLQDCPYMVP 1209
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BLAST of EMLSAG00000003562 vs. C. finmarchicus
Match: gi|592853504|gb|GAXK01104040.1| (TSA: Calanus finmarchicus comp271928_c0_seq7 transcribed RNA sequence)

HSP 1 Score: 33.4982 bits (75), Expect = 2.966e-1
Identity = 20/67 (29.85%), Postives = 29/67 (43.28%), Query Frame = 0 
Query:   37 ERCLTVDDRECQFPIIIGNTSISMCISIGLGDGVYFCPVHTLPDGMATPDSLSVLGICKPDCPRLIP 103
            + C T +  EC FP I  +T    C S+     VY     T  +G      +   G+C  DCP ++P
Sbjct: 3569 QSCYTQEGNECVFPFIYKDTEYFNCTSV----DVYQPWCATEMNGT----RIEAWGLCLQDCPYMVP 3745
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BLAST of EMLSAG00000003562 vs. C. finmarchicus
Match: gi|592853497|gb|GAXK01104047.1| (TSA: Calanus finmarchicus comp271928_c0_seq14 transcribed RNA sequence)

HSP 1 Score: 33.4982 bits (75), Expect = 2.999e-1
Identity = 20/67 (29.85%), Postives = 29/67 (43.28%), Query Frame = 0 
Query:   37 ERCLTVDDRECQFPIIIGNTSISMCISIGLGDGVYFCPVHTLPDGMATPDSLSVLGICKPDCPRLIP 103
            + C T +  EC FP I  +T    C S+     VY     T  +G      +   G+C  DCP ++P
Sbjct:  519 QSCYTQEGNECVFPFIYKDTEYFNCTSV----DVYQPWCATEMNGT----RIEAWGLCLQDCPYMVP 695
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BLAST of EMLSAG00000003562 vs. C. finmarchicus
Match: gi|592770875|gb|GAXK01183693.1| (TSA: Calanus finmarchicus comp56428_c3_seq2 transcribed RNA sequence)

HSP 1 Score: 32.7278 bits (73), Expect = 4.904e-1
Identity = 21/87 (24.14%), Postives = 33/87 (37.93%), Query Frame = 0 
Query:   13 SDFTVTRSLLLTTIEEETIAPNVTERCLTVDDRECQFPIIIGNTSISMCISIGLGDGVYFCPVHTLPDGMATPDSLSVLGICKPDCP 99
            + F+V      +  E   +  +  E CL+     C FP      S S C + G  +G  +C V    +G    ++      CK  CP
Sbjct:   95 AQFSVADGRFWSN-EACNVLKSTPEACLSTSSNPCIFPFTYQGVSYSSCSTAGSENGAAWCAVQVDQEGEVIKNAWE---DCKAGCP 343
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BLAST of EMLSAG00000003562 vs. C. finmarchicus
Match: gi|592879929|gb|GAXK01077972.1| (TSA: Calanus finmarchicus comp1132639_c0_seq31 transcribed RNA sequence)

HSP 1 Score: 31.9574 bits (71), Expect = 8.684e-1
Identity = 22/69 (31.88%), Postives = 31/69 (44.93%), Query Frame = 0 
Query:   37 ERCLTVDDRECQFPIIIGNTSISMCISIGLGDGVY--FCPVHTLPDGMATPDSLSVLGICKPDCPRLIP 103
            + C T++  EC FP      +   C S+     VY  +C   T  DG     S+   G+C PDCP + P
Sbjct: 1382 QSCYTMEGNECVFPFDYKEVTYYNCSSVD----VYQPWCATET--DGT----SIVSWGLCLPDCPYVEP 1558
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BLAST of EMLSAG00000003562 vs. C. finmarchicus
Match: gi|592903590|gb|GAXK01054785.1| (TSA: Calanus finmarchicus comp3332045_c0_seq1 transcribed RNA sequence)

HSP 1 Score: 31.187 bits (69), Expect = 1.055e+0
Identity = 23/101 (22.77%), Postives = 39/101 (38.61%), Query Frame = 0 
Query:    1 MSSQLKNINDAFSDFTVTRSLLLTTIEEETIAPNVTERCLTVDDRE---CQFPIIIGNTSISMCISIGLGDGVYFCPVHTLPDGMATPDSLSVLGICKPDC 98
            ++SQL N+     D   +  + + ++    I  +    CLT+D      C FP      + S+C +    DG  +C      +G    +S    G C   C
Sbjct:   27 INSQLNNLQHTMRDIQGSYLVFILSV----IGYDSCRGCLTIDKDPNIPCAFPFTYQGRTYSVCTNATDQDGKLWCATKVDKNGFYIKNS-KQWGYCSDQC 314
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BLAST of EMLSAG00000003562 vs. C. finmarchicus
Match: gi|592890871|gb|GAXK01067504.1| (TSA: Calanus finmarchicus comp16160_c1_seq1 transcribed RNA sequence)

HSP 1 Score: 30.8018 bits (68), Expect = 2.126e+0
Identity = 19/88 (21.59%), Postives = 33/88 (37.50%), Query Frame = 0 
Query:   14 DFTVTRSLLLTTIE--EETIAPNVTERCLTVDDRECQFPIIIGNTSISMCISIGLGDGVYFCPVHTLPDGMATPDSLSVLGICKPDCP 99
            D++       + +   EE   P+    CLT   + C FP        + C ++G  +G  +C      DG    ++      C+  CP
Sbjct:  173 DWSAADGRFWSNLACVEENKKPH---ECLTTLQKPCVFPFTYNGAVHNQCTNVGSENGAAWCATEVDSDGAVVRNTWE---DCQAGCP 418
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BLAST of EMLSAG00000003562 vs. C. finmarchicus
Match: gi|592839658|gb|GAXK01117886.1| (TSA: Calanus finmarchicus comp1752356_c0_seq3 transcribed RNA sequence)

HSP 1 Score: 30.4166 bits (67), Expect = 2.330e+0
Identity = 15/41 (36.59%), Postives = 21/41 (51.22%), Query Frame = 0 
Query:   40 LTVDDRECQFPIIIGNTSISMCISIGLGDGVYF--CPVHTL 78
            LT+D+ +C FP +  +     CI I + D VY   CPV   
Sbjct:  305 LTIDNPKCIFPFVYNSVKYDQCIVITIFDWVYLTRCPVRNF 427
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BLAST of EMLSAG00000003562 vs. L. salmonis peptides
Match: EMLSAP00000003562 (pep:novel supercontig:LSalAtl2s:LSalAtl2s1957:23934:24835:-1 gene:EMLSAG00000003562 transcript:EMLSAT00000003562 description:"maker-LSalAtl2s1957-augustus-gene-0.7")

HSP 1 Score: 324.709 bits (831), Expect = 1.692e-114
Identity = 161/161 (100.00%), Postives = 161/161 (100.00%), Query Frame = 0 
Query:    1 MSSQLKNINDAFSDFTVTRSLLLTTIEEETIAPNVTERCLTVDDRECQFPIIIGNTSISMCISIGLGDGVYFCPVHTLPDGMATPDSLSVLGICKPDCPRLIPMPIAITEDMNSTPDINKTPQFGTPPPNTPFPIQTATTTMNTITTTCKFIQSKNLKYLN 161
            MSSQLKNINDAFSDFTVTRSLLLTTIEEETIAPNVTERCLTVDDRECQFPIIIGNTSISMCISIGLGDGVYFCPVHTLPDGMATPDSLSVLGICKPDCPRLIPMPIAITEDMNSTPDINKTPQFGTPPPNTPFPIQTATTTMNTITTTCKFIQSKNLKYLN
Sbjct:    1 MSSQLKNINDAFSDFTVTRSLLLTTIEEETIAPNVTERCLTVDDRECQFPIIIGNTSISMCISIGLGDGVYFCPVHTLPDGMATPDSLSVLGICKPDCPRLIPMPIAITEDMNSTPDINKTPQFGTPPPNTPFPIQTATTTMNTITTTCKFIQSKNLKYLN 161
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BLAST of EMLSAG00000003562 vs. L. salmonis peptides
Match: EMLSAP00000003561 (pep:novel supercontig:LSalAtl2s:LSalAtl2s1957:14612:15869:1 gene:EMLSAG00000003561 transcript:EMLSAT00000003561 description:"maker-LSalAtl2s1957-augustus-gene-0.6")

HSP 1 Score: 251.136 bits (640), Expect = 1.164e-85
Identity = 139/145 (95.86%), Postives = 140/145 (96.55%), Query Frame = 0 
Query:   17 VTRSLLLTTIEEETIAPNVTERCLTVDDRECQFPIIIGNTSISMCISIGLGDGVYFCPVHTLPDGMATPDSLSVLGICKPDCPRLIPMPIAITEDMNSTPDINKTPQFGTPPPNTPFPIQTATTTMNTITTTCKFIQSKNLKYLN 161
            VT SLLLTTIEEETIAPNVTERCLTVDDRECQFPIIIGNTSISMCISIGLGDGVYFCPVHTLPDGM TPDSLSVLGICKPDCPRLIPMPIAITEDM+STPDINKTPQFGT PPNTPFPI TATTTMNTITTTCKFIQSKNL YLN
Sbjct:   11 VTCSLLLTTIEEETIAPNVTERCLTVDDRECQFPIIIGNTSISMCISIGLGDGVYFCPVHTLPDGMPTPDSLSVLGICKPDCPRLIPMPIAITEDMSSTPDINKTPQFGTLPPNTPFPITTATTTMNTITTTCKFIQSKNLTYLN 155
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BLAST of EMLSAG00000003562 vs. L. salmonis peptides
Match: EMLSAP00000003258 (pep:novel supercontig:LSalAtl2s:LSalAtl2s1791:10266:11252:-1 gene:EMLSAG00000003258 transcript:EMLSAT00000003258 description:"maker-LSalAtl2s1791-snap-gene-0.5")

HSP 1 Score: 108.227 bits (269), Expect = 2.520e-30
Identity = 53/59 (89.83%), Postives = 56/59 (94.92%), Query Frame = 0 
Query:   17 VTRSLLLTTIEEETIAPNVTERCLTVDDRECQFPIIIGNTSISMCISIGLGDGVYFCPV 75
            VTRSLLLTTIEEETIAPNVTERCLTVDDRECQFPIIIGNTSISMCISIGLG+G+   P+
Sbjct:   45 VTRSLLLTTIEEETIAPNVTERCLTVDDRECQFPIIIGNTSISMCISIGLGEGLIPMPI 103
[Close]
BLAST of EMLSAG00000003562 vs. L. salmonis peptides
Match: EMLSAP00000003067 (pep:novel supercontig:LSalAtl2s:LSalAtl2s1739:29725:30837:-1 gene:EMLSAG00000003067 transcript:EMLSAT00000003067 description:"maker-LSalAtl2s1739-augustus-gene-0.5")

HSP 1 Score: 48.1358 bits (113), Expect = 3.475e-8
Identity = 31/98 (31.63%), Postives = 43/98 (43.88%), Query Frame = 0 
Query:   39 CLTVDDRECQFPIIIGNTSISMCISIGLGDGVYFCPVHTLPDGMATPDSLSVLGICKPDCPR-------LIPMPIAITEDMNSTPDINKTPQFGTPPP 129
            C T     C FP I      S C ++   +G ++CP+    DG+    SL+  G C+ +C R       L P   A T D+NS  D+       TPPP
Sbjct:   24 CTTALGIRCIFPFIYKGQRYSSCTNVDSRNGRFWCPIFLNRDGVFPERSLN-FGYCRRNCLRQKRPDQILTPTSFATTVDINSITDMKIATNGRTPPP 120
The following BLAST results are available for this feature:
BLAST of EMLSAG00000003562 vs. GO
Analysis Date: 2014-04-02 (Blast vs. GO)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000003562 vs. C. finmarchicus
Analysis Date: 2014-05-09 (TblastN vs C. finmarchicus TSA)
Total hits: 25
Match NameE-valueIdentityDescription
gi|592916106|gb|GAXK01042269.1|2.797e-335.71TSA: Calanus finmarchicus comp299868_c0_seq1 trans... [more]
gi|592853505|gb|GAXK01104039.1|2.781e-129.85TSA: Calanus finmarchicus comp271928_c0_seq6 trans... [more]
gi|592853498|gb|GAXK01104046.1|2.828e-129.85TSA: Calanus finmarchicus comp271928_c0_seq13 tran... [more]
gi|592853504|gb|GAXK01104040.1|2.966e-129.85TSA: Calanus finmarchicus comp271928_c0_seq7 trans... [more]
gi|592853497|gb|GAXK01104047.1|2.999e-129.85TSA: Calanus finmarchicus comp271928_c0_seq14 tran... [more]
gi|592770875|gb|GAXK01183693.1|4.904e-124.14TSA: Calanus finmarchicus comp56428_c3_seq2 transc... [more]
gi|592879929|gb|GAXK01077972.1|8.684e-131.88TSA: Calanus finmarchicus comp1132639_c0_seq31 tra... [more]
gi|592903590|gb|GAXK01054785.1|1.055e+022.77TSA: Calanus finmarchicus comp3332045_c0_seq1 tran... [more]
gi|592890871|gb|GAXK01067504.1|2.126e+021.59TSA: Calanus finmarchicus comp16160_c1_seq1 transc... [more]
gi|592839658|gb|GAXK01117886.1|2.330e+036.59TSA: Calanus finmarchicus comp1752356_c0_seq3 tran... [more]

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BLAST of EMLSAG00000003562 vs. L. salmonis peptides
Analysis Date: 2014-05-10 (Blastp vs. self)
Total hits: 4
Match NameE-valueIdentityDescription
EMLSAP000000035621.692e-114100.00pep:novel supercontig:LSalAtl2s:LSalAtl2s1957:2393... [more]
EMLSAP000000035611.164e-8595.86pep:novel supercontig:LSalAtl2s:LSalAtl2s1957:1461... [more]
EMLSAP000000032582.520e-3089.83pep:novel supercontig:LSalAtl2s:LSalAtl2s1791:1026... [more]
EMLSAP000000030673.475e-831.63pep:novel supercontig:LSalAtl2s:LSalAtl2s1739:2972... [more]
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BLAST of EMLSAG00000003562 vs. SwissProt
Analysis Date: 2017-02-10 (Blastp vs. SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000003562 vs. Select Arthropod Genomes
Analysis Date: 2017-02-20 (Blastp vs. Selected Arthropods)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000003562 vs. nr
Analysis Date: 2017-02-20 (Blastp vs. NR (2/2017))
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000003562 vs. Tigriopus kingsejongenis genes
Analysis Date: 2018-04-18 (Blastp vs. Tigriopus kingsejongensis proteins)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
LSalAtl2s1957supercontigLSalAtl2s1957:23934..24835 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
ensembl2013-09-26 .965016
Blast vs. GO2014-04-02
TblastN vs C. finmarchicus TSA2014-05-09
Blastp vs. self2014-05-10
Blastp vs. SwissProt2017-02-10
Blastp vs. Selected Arthropods2017-02-20
Blastp vs. NR (2/2017)2017-02-20
Blastp vs. Tigriopus kingsejongensis proteins2018-04-18
Properties
Property NameValue
Logic nameensemblgenomes
Descriptionmaker-LSalAtl2s1957-augustus-gene-0.7
Biotypeprotein_coding
EvidenceIEA
NoteHypothetical protein
Cross References
External references for this gene
DatabaseAccession
Ensembl Metazoa (gene)EMLSAG00000003562 (primary cross-reference)
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
EMLSAT00000003562EMLSAT00000003562-699409Lepeophtheirus salmonismRNA


Sequences
The following sequences are available for this feature:

gene from alignment at LSalAtl2s1957:23934..24835-

Legend: mRNA
Hold the cursor over a type above to highlight its positions in the sequence below.
>EMLSAG00000003562-686328 ID=EMLSAG00000003562-686328|Name=EMLSAG00000003562|organism=Lepeophtheirus salmonis|type=gene|length=902bp|location=Sequence derived from alignment at LSalAtl2s1957:23934..24835- (Lepeophtheirus salmonis)
ATGTCTTCTCAATTAAAGAATATAAATGATGCTTTTTCTGATTTTACAGT
TACTCGTTCCCTACTTCTAACAACAATTGAGGAAGAAACGATTGCACCAA
ATGGTAAAATCTAATTATCTTTTCTCATCATCTTTAATTAATCAACAATA
CAATTTATCACTTGAAATTATTAACTATTTTATTCACTTATAGTCACTGA
ACGTTGTTTGACGGTTGACGATAGGGAATGTCAATTCCCGATTATTATCG
GGAATACGTCCATTAGTATGTGTATTAGCATAGGCTTAGGAGATGGTGTA
TATTTCTGCCCCGTTCATACACTACCTGATGGAATGGCTACTCCAGATAG
TTTATCAGTTTTAGGGATTTGCAAACCAGATTGTCCAAGTATATAATCAC
ATAAATTAAACTTACTATATAAAAAACAATATTTGCGTTCTGTTTATACT
TTCATTTTGTTTTGTCAGGACTAATTCCTATGCCCATAGCAATAACCGGT
GAGTTTTATTCGATATTAAATGCGTAAATCAATTATGTTTTTTCTTTTTT
CTTGGGCTACAGAGGATATGAATTCAACTCCAGATATTAATAAAAGTAAG
TACATTTGAGATATAACTTGTATTTCATTATTTAATAAAATTATAACTTT
TATTTTACAATATAGCACCACAATTTGGAACCCCGCCTCCGAATAGTAAG
TATATGTTATAGTTTCCACCCTATTGAAATACCTATATTTTTTTCAGCAC
CATTTCCGATCCAAACTGCAACGAGTAAGTTTTAATCAAATTGTATGACT
CACTGATTTAAATGTATATTTTTCATAAATCTAGCAACTATGAACACAAT
TACAACTACTTGTAAGTTTATTCAAAGCAAAAATCTCAAATATTTGAACT
AA
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