EMLSAG00000000029, EMLSAG00000000029-682795 (gene) Lepeophtheirus salmonis
Overview
Associated RNAi Experiments
Nothing found Homology
BLAST of EMLSAG00000000029 vs. C. finmarchicus
Match: gi|592852415|gb|GAXK01105129.1| (TSA: Calanus finmarchicus comp1463233_c0_seq1 transcribed RNA sequence) HSP 1 Score: 40.0466 bits (92), Expect = 5.260e-4 Identity = 30/99 (30.30%), Postives = 48/99 (48.48%), Query Frame = 0 Query: 4 NIIKLSVALLLFVGVTSGLNCWKAGLHTRRSPAVFNQQTCDAASKSCMIQRYMVNGMMHTSADCSTEDK---DTCMEKEKGMVMETVCYCKTEYCNSAS 99 ++ L+V + LF+ V GLNCW GL + PA + ++C +Y G + CS+++K + C E ++E CYC CNS+S Sbjct: 255 RLLFLAVGISLFISVF-GLNCW-TGLESEADPARWKMCDLKRGFRTCYT-KYDPLGQL-AGRGCSSKEKLYREHCEVHEMDGLVEKFCYCSFNLCNSSS 539
BLAST of EMLSAG00000000029 vs. C. finmarchicus
Match: gi|592842613|gb|GAXK01114931.1| (TSA: Calanus finmarchicus comp3427289_c0_seq1 transcribed RNA sequence) HSP 1 Score: 35.8094 bits (81), Expect = 6.488e-3 Identity = 26/82 (31.71%), Postives = 43/82 (52.44%), Query Frame = 0 Query: 43 CDAASKSCMIQRYMVNGMMHTSADCSTEDKDTCM-EKEKGMVMETVCYCKTEYCNSASK------VRYLGSLALVLGFWVLK 117 CD +SC+ Q + +D + DK C+ EK G V++T CYC+ + CNSA++ + ++ S + VL + LK Sbjct: 11 CDDEDRSCVKQWRDGVAISWGCSDYAGPDK--CLHEKSSGQVLDTTCYCQGDSCNSATRWTTVTIMWWIPSYSFVLMWIFLK 250
BLAST of EMLSAG00000000029 vs. C. finmarchicus
Match: gi|592762279|gb|GAXK01192134.1| (TSA: Calanus finmarchicus comp41728_c0_seq1 transcribed RNA sequence) HSP 1 Score: 35.039 bits (79), Expect = 1.934e-2 Identity = 29/110 (26.36%), Postives = 47/110 (42.73%), Query Frame = 0 Query: 8 LSVALLLFVGV-TSGLNCWKAGLHTRRSPAVFNQQTCDAASKSCMIQRYMVNGMMHTSADCSTEDKDTCMEKEKGMVMETVCYCKTEYCNSASKVRYLGSLALVLGFWVL 116 + AL+L V +S L+CW+ L P + C + C++ + + S D +D C +EKG ++ C+C T+ CN G +V WVL Sbjct: 60 FAAALVLICAVPSSPLSCWEC-LTDCEDPQNLKVEECMEDVQHCLMLKLDGAKTLTCSPDPPAPGQDGC--REKGTTVQ--CFCDTDLCN--------GGQGMVGAVWVL 350
BLAST of EMLSAG00000000029 vs. C. finmarchicus
Match: gi|592852414|gb|GAXK01105130.1| (TSA: Calanus finmarchicus comp1463233_c0_seq2 transcribed RNA sequence) HSP 1 Score: 34.2686 bits (77), Expect = 5.815e-2 Identity = 25/82 (30.49%), Postives = 38/82 (46.34%), Query Frame = 0 Query: 21 GLNCWKAGLHTRRSPAVFNQQTCDAASKSCMIQRYMVNGMMHTSADCSTEDK---DTCMEKEKGMVMETVCYCKTEYCNSAS 99 GLNCW GL + PA + ++C +Y G + CS+++K + C E ++E CYC CNS+S Sbjct: 186 GLNCW-TGLESEADPARWKMCDLKRGFRTCYT-KYDPLGQL-AGRGCSSKEKLYREHCEVHEMDGLVEKFCYCSFNLCNSSS 422
BLAST of EMLSAG00000000029 vs. C. finmarchicus
Match: gi|592810287|gb|GAXK01144281.1| (TSA: Calanus finmarchicus comp1490443_c0_seq1 transcribed RNA sequence) HSP 1 Score: 33.8834 bits (76), Expect = 6.308e-2 Identity = 28/105 (26.67%), Postives = 44/105 (41.90%), Query Frame = 0 Query: 2 YSNIIKLSVALLLFVGVTSGLNCWKAGLHTRRSPAVFNQQTCDAAS--KSCMIQRYMVNGMMHTSADCSTEDK---DTCMEKEKGMVMETVCYCKTEYCNSASKV 101 Y + + A+L+ + + SGL C+ P++ C+ +SC I +Y G + T CST+D+ C G E CYC CN A + Sbjct: 69 YRHSFWFTYAMLISIPIGSGLKCFS-------DPSMMESTRCEERKGFRSCFI-KYDQGGAV-TGRGCSTKDRIFSTLCENHVMGGSEERFCYCSFLLCNQAKRT 356
BLAST of EMLSAG00000000029 vs. C. finmarchicus
Match: gi|592902333|gb|GAXK01056042.1| (TSA: Calanus finmarchicus comp942718_c0_seq1 transcribed RNA sequence) HSP 1 Score: 32.3426 bits (72), Expect = 2.434e-1 Identity = 32/103 (31.07%), Postives = 46/103 (44.66%), Query Frame = 0 Query: 1 MYSNIIKLSVALLLFVGVTSGLNCW--KAGLHTRRSPAVFNQQTCDAASKSCMIQRYMVNGMMHTSADCSTEDKDTCMEKEK---GMVMETVCYCKTEYCNSA 98 M ++L + LL+ S L C+ K GL R +TC +Y G++ T+ CST+DK +E E G E CYC+T CN+A Sbjct: 98 MKRGFLRLFITLLMMESGVS-LKCYSDKEGLQWTRCDDKKGFRTC--------FTKYDQRGLV-TARGCSTKDKILHIECENHVMGKTSEKFCYCRTFLCNNA 376
BLAST of EMLSAG00000000029 vs. C. finmarchicus
Match: gi|592827225|gb|GAXK01129341.1| (TSA: Calanus finmarchicus comp4148536_c0_seq1 transcribed RNA sequence) HSP 1 Score: 31.187 bits (69), Expect = 5.528e-1 Identity = 24/95 (25.26%), Postives = 40/95 (42.11%), Query Frame = 0 Query: 28 GLHTRRSPAV---FNQQTCD---AASKSCMIQRYMVNGMMHTSADCSTEDKDTCMEKEKGMVMETVCYCKTEYCNS-ASKVRYLGSLALVLGFWV 115 G+ +P + F + C K+C+ +G+M C T ++ + T CYC T+YCN +++R G + L L WV Sbjct: 120 GIPVEEAPFIIPRFKEFDCSLGGGTQKNCLKTVKESDGLMLIYRSCGTRSDESGCSTDPANT--TSCYCSTDYCNGVVTRLRLPGWVMLGLLSWV 398
BLAST of EMLSAG00000000029 vs. C. finmarchicus
Match: gi|592940819|gb|GAXK01017734.1| (TSA: Calanus finmarchicus comp33530_c0_seq3 transcribed RNA sequence) HSP 1 Score: 28.4906 bits (62), Expect = 5.903e+0 Identity = 29/108 (26.85%), Postives = 46/108 (42.59%), Query Frame = 0 Query: 1 MYSNIIKLSVALLLFVG----VTSGLNCWKAGLHTRRSPAVFNQQTC-DAASKSCMIQRYMVNG----MMHTSADCSTEDKDT---CMEKEKGMVMETVCYCKTEYCN 96 M++ I L ++L + G V +N G T + + QTC + + C I + ++ + TS C+ EDKD C G M T C C+ + CN Sbjct: 36 MFARIAILVISLAVVYGKQCYVCDSIN----GNCTAEAEHPGDLQTCPEERNNGCFISQILIGDGDELKVITSRGCTAEDKDDEYKCNVNRAGTHMFTFCNCRDDSCN 347
BLAST of EMLSAG00000000029 vs. C. finmarchicus
Match: gi|592888291|gb|GAXK01070084.1| (TSA: Calanus finmarchicus comp1549712_c1_seq2 transcribed RNA sequence) HSP 1 Score: 28.1054 bits (61), Expect = 8.658e+0 Identity = 30/110 (27.27%), Postives = 43/110 (39.09%), Query Frame = 0 Query: 4 NIIKLSVALLLFVGVTSGLNCWKAGLHTRRSPAVFNQQTCDAAS--KSCMIQRYMVNGMMHTSADCSTEDKD--TCMEKEKGMVMETVCYCKTEYCNSASKVRYLGSLAL 109 NI + + LL+F S L P + CD K+C RY G++ T CST+ C G + + CYCK CN ++ V+ L L Sbjct: 360 NIWNIVLTLLIFHKKVSSYMMSSRKLLCFSQPKGDATKDCDKTRGFKTCF-TRYDSEGLV-TGRGCSTKRSSYKKCETHSYGKISQKFCYCKKTMCNLSTTVKPTSILTL 683
BLAST of EMLSAG00000000029 vs. C. finmarchicus
Match: gi|592888292|gb|GAXK01070083.1| (TSA: Calanus finmarchicus comp1549712_c1_seq1 transcribed RNA sequence) HSP 1 Score: 28.1054 bits (61), Expect = 8.677e+0 Identity = 30/110 (27.27%), Postives = 43/110 (39.09%), Query Frame = 0 Query: 4 NIIKLSVALLLFVGVTSGLNCWKAGLHTRRSPAVFNQQTCDAAS--KSCMIQRYMVNGMMHTSADCSTEDKD--TCMEKEKGMVMETVCYCKTEYCNSASKVRYLGSLAL 109 NI + + LL+F S L P + CD K+C RY G++ T CST+ C G + + CYCK CN ++ V+ L L Sbjct: 360 NIWNIVLTLLIFHKKVSSYMMSSRKLLCFSQPKGDATKDCDKTRGFKTCF-TRYDSEGLV-TGRGCSTKRSSYKKCETHSYGKISQKFCYCKKTMCNLSTTVKPTSILTL 683
BLAST of EMLSAG00000000029 vs. L. salmonis peptides
Match: EMLSAP00000000029 (pep:novel supercontig:LSalAtl2s:LSalAtl2s1006:130139:131393:1 gene:EMLSAG00000000029 transcript:EMLSAT00000000029 description:"maker-LSalAtl2s1006-augustus-gene-1.19") HSP 1 Score: 254.218 bits (648), Expect = 4.564e-88 Identity = 122/122 (100.00%), Postives = 122/122 (100.00%), Query Frame = 0 Query: 1 MYSNIIKLSVALLLFVGVTSGLNCWKAGLHTRRSPAVFNQQTCDAASKSCMIQRYMVNGMMHTSADCSTEDKDTCMEKEKGMVMETVCYCKTEYCNSASKVRYLGSLALVLGFWVLKSSWIG 122 MYSNIIKLSVALLLFVGVTSGLNCWKAGLHTRRSPAVFNQQTCDAASKSCMIQRYMVNGMMHTSADCSTEDKDTCMEKEKGMVMETVCYCKTEYCNSASKVRYLGSLALVLGFWVLKSSWIG Sbjct: 1 MYSNIIKLSVALLLFVGVTSGLNCWKAGLHTRRSPAVFNQQTCDAASKSCMIQRYMVNGMMHTSADCSTEDKDTCMEKEKGMVMETVCYCKTEYCNSASKVRYLGSLALVLGFWVLKSSWIG 122
BLAST of EMLSAG00000000029 vs. L. salmonis peptides
Match: EMLSAP00000012043 (pep:novel supercontig:LSalAtl2s:LSalAtl2s858:175951:178190:1 gene:EMLSAG00000012043 transcript:EMLSAT00000012043 description:"augustus-LSalAtl2s858-processed-gene-1.5") HSP 1 Score: 95.9005 bits (237), Expect = 4.023e-26 Identity = 43/98 (43.88%), Postives = 61/98 (62.24%), Query Frame = 0 Query: 21 GLNCWKAGLHTRRSPAVFNQQTCDAASKSCMIQRYMVNGMMHTSADCSTEDKDTCMEKEKGMVMETVCYCKTEYCNSASKVRYLGSLALVLGFWVLKS 118 GL CW + L T P F + C + SKSC Y V GM H +A+CS EDK TC ++ KG ++ET C+C T++CNS + R +G ++LVLG +K+ Sbjct: 19 GLKCWNSPLSTTGRPDPFIEINCGSNSKSCRRTEYKVAGMTHIAAECSNEDKKTCSDQIKGSIIETTCFCNTDFCNSGMRARGIGVMSLVLGICAIKA 116 The following BLAST results are available for this feature:
BLAST of EMLSAG00000000029 vs. GO
Analysis Date: 2014-04-02 (Blast vs. GO) Total hits: 0
BLAST of EMLSAG00000000029 vs. C. finmarchicus
Analysis Date: 2014-05-09 (TblastN vs C. finmarchicus TSA) Total hits: 10
BLAST of EMLSAG00000000029 vs. L. salmonis peptides
Analysis Date: 2014-05-10 (Blastp vs. self) Total hits: 2
BLAST of EMLSAG00000000029 vs. SwissProt
Analysis Date: 2017-02-10 (Blastp vs. SwissProt) Total hits: 0
BLAST of EMLSAG00000000029 vs. Select Arthropod Genomes
Analysis Date: 2017-02-20 (Blastp vs. Selected Arthropods) Total hits: 0
BLAST of EMLSAG00000000029 vs. nr
Analysis Date: 2017-02-20 (Blastp vs. NR (2/2017)) Total hits: 0
BLAST of EMLSAG00000000029 vs. Tigriopus kingsejongenis genes
Analysis Date: 2018-04-18 (Blastp vs. Tigriopus kingsejongensis proteins) Total hits: 0
Alignments
The following features are aligned
Analyses
This gene is derived from or has results from the following analyses
Properties
Cross References
External references for this gene
Relationships
The following mRNA feature(s) are a part of this gene:
Sequences
The following sequences are available for this feature:
gene from alignment at LSalAtl2s1006:130139..131393+ Legend: mRNA Hold the cursor over a type above to highlight its positions in the sequence below.>EMLSAG00000000029-682795 ID=EMLSAG00000000029-682795|Name=EMLSAG00000000029|organism=Lepeophtheirus salmonis|type=gene|length=1255bp|location=Sequence derived from alignment at LSalAtl2s1006:130139..131393+ (Lepeophtheirus salmonis)back to top Add to Basket
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