EMLSAG00000000029, EMLSAG00000000029-682795 (gene) Lepeophtheirus salmonis

Overview
NameEMLSAG00000000029
Unique NameEMLSAG00000000029-682795
Typegene
OrganismLepeophtheirus salmonis (salmon louse)
Associated RNAi Experiments

Nothing found

Homology
BLAST of EMLSAG00000000029 vs. C. finmarchicus
Match: gi|592852415|gb|GAXK01105129.1| (TSA: Calanus finmarchicus comp1463233_c0_seq1 transcribed RNA sequence)

HSP 1 Score: 40.0466 bits (92), Expect = 5.260e-4
Identity = 30/99 (30.30%), Postives = 48/99 (48.48%), Query Frame = 0
Query:    4 NIIKLSVALLLFVGVTSGLNCWKAGLHTRRSPAVFNQQTCDAASKSCMIQRYMVNGMMHTSADCSTEDK---DTCMEKEKGMVMETVCYCKTEYCNSAS 99
             ++ L+V + LF+ V  GLNCW  GL +   PA +         ++C   +Y   G +     CS+++K   + C   E   ++E  CYC    CNS+S
Sbjct:  255 RLLFLAVGISLFISVF-GLNCW-TGLESEADPARWKMCDLKRGFRTCYT-KYDPLGQL-AGRGCSSKEKLYREHCEVHEMDGLVEKFCYCSFNLCNSSS 539          
BLAST of EMLSAG00000000029 vs. C. finmarchicus
Match: gi|592842613|gb|GAXK01114931.1| (TSA: Calanus finmarchicus comp3427289_c0_seq1 transcribed RNA sequence)

HSP 1 Score: 35.8094 bits (81), Expect = 6.488e-3
Identity = 26/82 (31.71%), Postives = 43/82 (52.44%), Query Frame = 0
Query:   43 CDAASKSCMIQRYMVNGMMHTSADCSTEDKDTCM-EKEKGMVMETVCYCKTEYCNSASK------VRYLGSLALVLGFWVLK 117
            CD   +SC+ Q      +    +D +  DK  C+ EK  G V++T CYC+ + CNSA++      + ++ S + VL +  LK
Sbjct:   11 CDDEDRSCVKQWRDGVAISWGCSDYAGPDK--CLHEKSSGQVLDTTCYCQGDSCNSATRWTTVTIMWWIPSYSFVLMWIFLK 250          
BLAST of EMLSAG00000000029 vs. C. finmarchicus
Match: gi|592762279|gb|GAXK01192134.1| (TSA: Calanus finmarchicus comp41728_c0_seq1 transcribed RNA sequence)

HSP 1 Score: 35.039 bits (79), Expect = 1.934e-2
Identity = 29/110 (26.36%), Postives = 47/110 (42.73%), Query Frame = 0
Query:    8 LSVALLLFVGV-TSGLNCWKAGLHTRRSPAVFNQQTCDAASKSCMIQRYMVNGMMHTSADCSTEDKDTCMEKEKGMVMETVCYCKTEYCNSASKVRYLGSLALVLGFWVL 116
             + AL+L   V +S L+CW+  L     P     + C    + C++ +      +  S D     +D C  +EKG  ++  C+C T+ CN        G   +V   WVL
Sbjct:   60 FAAALVLICAVPSSPLSCWEC-LTDCEDPQNLKVEECMEDVQHCLMLKLDGAKTLTCSPDPPAPGQDGC--REKGTTVQ--CFCDTDLCN--------GGQGMVGAVWVL 350          
BLAST of EMLSAG00000000029 vs. C. finmarchicus
Match: gi|592852414|gb|GAXK01105130.1| (TSA: Calanus finmarchicus comp1463233_c0_seq2 transcribed RNA sequence)

HSP 1 Score: 34.2686 bits (77), Expect = 5.815e-2
Identity = 25/82 (30.49%), Postives = 38/82 (46.34%), Query Frame = 0
Query:   21 GLNCWKAGLHTRRSPAVFNQQTCDAASKSCMIQRYMVNGMMHTSADCSTEDK---DTCMEKEKGMVMETVCYCKTEYCNSAS 99
            GLNCW  GL +   PA +         ++C   +Y   G +     CS+++K   + C   E   ++E  CYC    CNS+S
Sbjct:  186 GLNCW-TGLESEADPARWKMCDLKRGFRTCYT-KYDPLGQL-AGRGCSSKEKLYREHCEVHEMDGLVEKFCYCSFNLCNSSS 422          
BLAST of EMLSAG00000000029 vs. C. finmarchicus
Match: gi|592810287|gb|GAXK01144281.1| (TSA: Calanus finmarchicus comp1490443_c0_seq1 transcribed RNA sequence)

HSP 1 Score: 33.8834 bits (76), Expect = 6.308e-2
Identity = 28/105 (26.67%), Postives = 44/105 (41.90%), Query Frame = 0
Query:    2 YSNIIKLSVALLLFVGVTSGLNCWKAGLHTRRSPAVFNQQTCDAAS--KSCMIQRYMVNGMMHTSADCSTEDK---DTCMEKEKGMVMETVCYCKTEYCNSASKV 101
            Y +    + A+L+ + + SGL C+         P++     C+     +SC I +Y   G + T   CST+D+     C     G   E  CYC    CN A + 
Sbjct:   69 YRHSFWFTYAMLISIPIGSGLKCFS-------DPSMMESTRCEERKGFRSCFI-KYDQGGAV-TGRGCSTKDRIFSTLCENHVMGGSEERFCYCSFLLCNQAKRT 356          
BLAST of EMLSAG00000000029 vs. C. finmarchicus
Match: gi|592902333|gb|GAXK01056042.1| (TSA: Calanus finmarchicus comp942718_c0_seq1 transcribed RNA sequence)

HSP 1 Score: 32.3426 bits (72), Expect = 2.434e-1
Identity = 32/103 (31.07%), Postives = 46/103 (44.66%), Query Frame = 0
Query:    1 MYSNIIKLSVALLLFVGVTSGLNCW--KAGLHTRRSPAVFNQQTCDAASKSCMIQRYMVNGMMHTSADCSTEDKDTCMEKEK---GMVMETVCYCKTEYCNSA 98
            M    ++L + LL+     S L C+  K GL   R       +TC          +Y   G++ T+  CST+DK   +E E    G   E  CYC+T  CN+A
Sbjct:   98 MKRGFLRLFITLLMMESGVS-LKCYSDKEGLQWTRCDDKKGFRTC--------FTKYDQRGLV-TARGCSTKDKILHIECENHVMGKTSEKFCYCRTFLCNNA 376          
BLAST of EMLSAG00000000029 vs. C. finmarchicus
Match: gi|592827225|gb|GAXK01129341.1| (TSA: Calanus finmarchicus comp4148536_c0_seq1 transcribed RNA sequence)

HSP 1 Score: 31.187 bits (69), Expect = 5.528e-1
Identity = 24/95 (25.26%), Postives = 40/95 (42.11%), Query Frame = 0
Query:   28 GLHTRRSPAV---FNQQTCD---AASKSCMIQRYMVNGMMHTSADCSTEDKDTCMEKEKGMVMETVCYCKTEYCNS-ASKVRYLGSLALVLGFWV 115
            G+    +P +   F +  C       K+C+      +G+M     C T   ++    +      T CYC T+YCN   +++R  G + L L  WV
Sbjct:  120 GIPVEEAPFIIPRFKEFDCSLGGGTQKNCLKTVKESDGLMLIYRSCGTRSDESGCSTDPANT--TSCYCSTDYCNGVVTRLRLPGWVMLGLLSWV 398          
BLAST of EMLSAG00000000029 vs. C. finmarchicus
Match: gi|592940819|gb|GAXK01017734.1| (TSA: Calanus finmarchicus comp33530_c0_seq3 transcribed RNA sequence)

HSP 1 Score: 28.4906 bits (62), Expect = 5.903e+0
Identity = 29/108 (26.85%), Postives = 46/108 (42.59%), Query Frame = 0
Query:    1 MYSNIIKLSVALLLFVG----VTSGLNCWKAGLHTRRSPAVFNQQTC-DAASKSCMIQRYMVNG----MMHTSADCSTEDKDT---CMEKEKGMVMETVCYCKTEYCN 96
            M++ I  L ++L +  G    V   +N    G  T  +    + QTC +  +  C I + ++       + TS  C+ EDKD    C     G  M T C C+ + CN
Sbjct:   36 MFARIAILVISLAVVYGKQCYVCDSIN----GNCTAEAEHPGDLQTCPEERNNGCFISQILIGDGDELKVITSRGCTAEDKDDEYKCNVNRAGTHMFTFCNCRDDSCN 347          
BLAST of EMLSAG00000000029 vs. C. finmarchicus
Match: gi|592888291|gb|GAXK01070084.1| (TSA: Calanus finmarchicus comp1549712_c1_seq2 transcribed RNA sequence)

HSP 1 Score: 28.1054 bits (61), Expect = 8.658e+0
Identity = 30/110 (27.27%), Postives = 43/110 (39.09%), Query Frame = 0
Query:    4 NIIKLSVALLLFVGVTSGLNCWKAGLHTRRSPAVFNQQTCDAAS--KSCMIQRYMVNGMMHTSADCSTEDKD--TCMEKEKGMVMETVCYCKTEYCNSASKVRYLGSLAL 109
            NI  + + LL+F    S        L     P     + CD     K+C   RY   G++ T   CST+      C     G + +  CYCK   CN ++ V+    L L
Sbjct:  360 NIWNIVLTLLIFHKKVSSYMMSSRKLLCFSQPKGDATKDCDKTRGFKTCF-TRYDSEGLV-TGRGCSTKRSSYKKCETHSYGKISQKFCYCKKTMCNLSTTVKPTSILTL 683          
BLAST of EMLSAG00000000029 vs. C. finmarchicus
Match: gi|592888292|gb|GAXK01070083.1| (TSA: Calanus finmarchicus comp1549712_c1_seq1 transcribed RNA sequence)

HSP 1 Score: 28.1054 bits (61), Expect = 8.677e+0
Identity = 30/110 (27.27%), Postives = 43/110 (39.09%), Query Frame = 0
Query:    4 NIIKLSVALLLFVGVTSGLNCWKAGLHTRRSPAVFNQQTCDAAS--KSCMIQRYMVNGMMHTSADCSTEDKD--TCMEKEKGMVMETVCYCKTEYCNSASKVRYLGSLAL 109
            NI  + + LL+F    S        L     P     + CD     K+C   RY   G++ T   CST+      C     G + +  CYCK   CN ++ V+    L L
Sbjct:  360 NIWNIVLTLLIFHKKVSSYMMSSRKLLCFSQPKGDATKDCDKTRGFKTCF-TRYDSEGLV-TGRGCSTKRSSYKKCETHSYGKISQKFCYCKKTMCNLSTTVKPTSILTL 683          
BLAST of EMLSAG00000000029 vs. L. salmonis peptides
Match: EMLSAP00000000029 (pep:novel supercontig:LSalAtl2s:LSalAtl2s1006:130139:131393:1 gene:EMLSAG00000000029 transcript:EMLSAT00000000029 description:"maker-LSalAtl2s1006-augustus-gene-1.19")

HSP 1 Score: 254.218 bits (648), Expect = 4.564e-88
Identity = 122/122 (100.00%), Postives = 122/122 (100.00%), Query Frame = 0
Query:    1 MYSNIIKLSVALLLFVGVTSGLNCWKAGLHTRRSPAVFNQQTCDAASKSCMIQRYMVNGMMHTSADCSTEDKDTCMEKEKGMVMETVCYCKTEYCNSASKVRYLGSLALVLGFWVLKSSWIG 122
            MYSNIIKLSVALLLFVGVTSGLNCWKAGLHTRRSPAVFNQQTCDAASKSCMIQRYMVNGMMHTSADCSTEDKDTCMEKEKGMVMETVCYCKTEYCNSASKVRYLGSLALVLGFWVLKSSWIG
Sbjct:    1 MYSNIIKLSVALLLFVGVTSGLNCWKAGLHTRRSPAVFNQQTCDAASKSCMIQRYMVNGMMHTSADCSTEDKDTCMEKEKGMVMETVCYCKTEYCNSASKVRYLGSLALVLGFWVLKSSWIG 122          
BLAST of EMLSAG00000000029 vs. L. salmonis peptides
Match: EMLSAP00000012043 (pep:novel supercontig:LSalAtl2s:LSalAtl2s858:175951:178190:1 gene:EMLSAG00000012043 transcript:EMLSAT00000012043 description:"augustus-LSalAtl2s858-processed-gene-1.5")

HSP 1 Score: 95.9005 bits (237), Expect = 4.023e-26
Identity = 43/98 (43.88%), Postives = 61/98 (62.24%), Query Frame = 0
Query:   21 GLNCWKAGLHTRRSPAVFNQQTCDAASKSCMIQRYMVNGMMHTSADCSTEDKDTCMEKEKGMVMETVCYCKTEYCNSASKVRYLGSLALVLGFWVLKS 118
            GL CW + L T   P  F +  C + SKSC    Y V GM H +A+CS EDK TC ++ KG ++ET C+C T++CNS  + R +G ++LVLG   +K+
Sbjct:   19 GLKCWNSPLSTTGRPDPFIEINCGSNSKSCRRTEYKVAGMTHIAAECSNEDKKTCSDQIKGSIIETTCFCNTDFCNSGMRARGIGVMSLVLGICAIKA 116          
The following BLAST results are available for this feature:
BLAST of EMLSAG00000000029 vs. GO
Analysis Date: 2014-04-02 (Blast vs. GO)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000000029 vs. C. finmarchicus
Analysis Date: 2014-05-09 (TblastN vs C. finmarchicus TSA)
Total hits: 10
Match NameE-valueIdentityDescription
gi|592852415|gb|GAXK01105129.1|5.260e-430.30TSA: Calanus finmarchicus comp1463233_c0_seq1 tran... [more]
gi|592842613|gb|GAXK01114931.1|6.488e-331.71TSA: Calanus finmarchicus comp3427289_c0_seq1 tran... [more]
gi|592762279|gb|GAXK01192134.1|1.934e-226.36TSA: Calanus finmarchicus comp41728_c0_seq1 transc... [more]
gi|592852414|gb|GAXK01105130.1|5.815e-230.49TSA: Calanus finmarchicus comp1463233_c0_seq2 tran... [more]
gi|592810287|gb|GAXK01144281.1|6.308e-226.67TSA: Calanus finmarchicus comp1490443_c0_seq1 tran... [more]
gi|592902333|gb|GAXK01056042.1|2.434e-131.07TSA: Calanus finmarchicus comp942718_c0_seq1 trans... [more]
gi|592827225|gb|GAXK01129341.1|5.528e-125.26TSA: Calanus finmarchicus comp4148536_c0_seq1 tran... [more]
gi|592940819|gb|GAXK01017734.1|5.903e+026.85TSA: Calanus finmarchicus comp33530_c0_seq3 transc... [more]
gi|592888291|gb|GAXK01070084.1|8.658e+027.27TSA: Calanus finmarchicus comp1549712_c1_seq2 tran... [more]
gi|592888292|gb|GAXK01070083.1|8.677e+027.27TSA: Calanus finmarchicus comp1549712_c1_seq1 tran... [more]
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BLAST of EMLSAG00000000029 vs. L. salmonis peptides
Analysis Date: 2014-05-10 (Blastp vs. self)
Total hits: 2
Match NameE-valueIdentityDescription
EMLSAP000000000294.564e-88100.00pep:novel supercontig:LSalAtl2s:LSalAtl2s1006:1301... [more]
EMLSAP000000120434.023e-2643.88pep:novel supercontig:LSalAtl2s:LSalAtl2s858:17595... [more]
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BLAST of EMLSAG00000000029 vs. SwissProt
Analysis Date: 2017-02-10 (Blastp vs. SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000000029 vs. Select Arthropod Genomes
Analysis Date: 2017-02-20 (Blastp vs. Selected Arthropods)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000000029 vs. nr
Analysis Date: 2017-02-20 (Blastp vs. NR (2/2017))
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000000029 vs. Tigriopus kingsejongenis genes
Analysis Date: 2018-04-18 (Blastp vs. Tigriopus kingsejongensis proteins)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
LSalAtl2s1006supercontigLSalAtl2s1006:130139..131393 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
ensembl2013-09-26 .965016
Blast vs. GO2014-04-02
TblastN vs C. finmarchicus TSA2014-05-09
Blastp vs. self2014-05-10
Blastp vs. SwissProt2017-02-10
Blastp vs. Selected Arthropods2017-02-20
Blastp vs. NR (2/2017)2017-02-20
Blastp vs. Tigriopus kingsejongensis proteins2018-04-18
Properties
Property NameValue
Logic nameensemblgenomes
Descriptionmaker-LSalAtl2s1006-augustus-gene-1.19
Biotypeprotein_coding
EvidenceIEA
NoteHypothetical protein
Cross References
External references for this gene
DatabaseAccession
Ensembl Metazoa (gene)EMLSAG00000000029 (primary cross-reference)
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
EMLSAT00000000029EMLSAT00000000029-695876Lepeophtheirus salmonismRNA


Sequences
The following sequences are available for this feature:

gene from alignment at LSalAtl2s1006:130139..131393+

Legend: mRNA
Hold the cursor over a type above to highlight its positions in the sequence below.
>EMLSAG00000000029-682795 ID=EMLSAG00000000029-682795|Name=EMLSAG00000000029|organism=Lepeophtheirus salmonis|type=gene|length=1255bp|location=Sequence derived from alignment at LSalAtl2s1006:130139..131393+ (Lepeophtheirus salmonis)
AAGTCAAAATGTCCATAACAACGAGGAACGCTAAAACGAAACAACCATTT AATGTCCAGGTCAAAAAATAATACAGAAAAAAAGTAACTCATTACTCCAT CCTCGTTTCTGAAGTAGACAGCAACTATTTCAAATTATCTTTTCCCGCTT TTCTTTGTCAGTGAAAGGATTTACATATCTTTCGAGCCATGTATTCAAAT ATTATTAAATTATCTGTAGCTTTACTCTTGTGTAAGTCTACCTTAATTTA TTATTAACCTAAATCATGTACCTTCTAATGTACCATTCGCAGTTGTCGGA GTAACGTCTGGGCTCAATTGTTGGAAGGCTGGACTTCATACAAGAAGATC TCCTGCAGTTTTTAATCAACAAACATGTGATGCTGCATCCAAGTCTTGTA TGATTCAGCGTTACATGGTGAATGGAATGATGCGTGAGTATAATTAAAAT CCCTCATTCTTAATTGATTTTAATCGAATCTTTGATACAGACACATCAGC TGACTGTTCGACTGAGGATAAAGATACTTGCATGGAGAAGGAAAAGGGTA TGGTTATGGAAACGGTATGTTATTGTAAAACGGAATATTGCAATTCGGCG AGTAAAGTGAGATACCTTGGATCTCTAGCCCTTGTGCTTGGGTTTTGGGT CCTCAAATCTTCATGGATAGGCTAAGACATATTACTCAAATGCATGGATA TACAAGCTTGTAGCTTTTCCACCTTTTCTCTTACAATAATATATAATTGT CTTTTTTGTATTTTGACATTTTTTTTCCCAATAAATTATGGATTTTGTAA ATAAAATTTTTGAGTAATTTGGTCAATTCTATATATCCGCTTATAAATGA TGATGGAGTACTACTCTAAGATATGGAATAAATTTGTACAAGACGAATAA TTGAATTGTTAAATGTATTTAGTATAATTTATCTTATCATAGGAATTAAC AAAATAAATTATAATGAATTAAAAATAAATATTTCTAAATTTGAAAAAAA CCTAAAATTGATTCCTAATAATCTTATGCTTCATACTTTTCCTTGGCAGC CTCAATGCTCTCCAAGGTTCGGGTGATCATGCTAACAATACGATCAGCAT AAGGAGAGTTTAAATTGCGGGCAGATCTACCATCTAAAGGCGTCTCATTC TCGATATAGGTAGTGAACAACTTTTGGAAAACGGCAGTTGAAGCAAACCA TTCGCTAAAAGACGTGAACAGTGCTGACTTGGAAGCAAAGGCAAATCCCA TAAAT
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