EMLSAG00000000142, EMLSAG00000000142-682908 (gene) Lepeophtheirus salmonis
Overview
Associated RNAi Experiments
Nothing found Homology
BLAST of EMLSAG00000000142 vs. C. finmarchicus
Match: gi|592762632|gb|GAXK01191781.1| (TSA: Calanus finmarchicus comp41299_c0_seq1 transcribed RNA sequence) HSP 1 Score: 27.335 bits (59), Expect = 8.739e+0 Identity = 11/23 (47.83%), Postives = 17/23 (73.91%), Query Frame = 0 Query: 34 NPGLDTAWLRAITRETDLKKMDQ 56 N G+D +LR I ++T+L K+DQ Sbjct: 2420 NSGVDPNFLRKIKKKTELSKLDQ 2488
BLAST of EMLSAG00000000142 vs. C. finmarchicus
Match: gi|592756239|gb|GAXK01198174.1| (TSA: Calanus finmarchicus comp7143334_c0_seq1 transcribed RNA sequence) HSP 1 Score: 26.9498 bits (58), Expect = 9.374e+0 Identity = 12/32 (37.50%), Postives = 18/32 (56.25%), Query Frame = 0 Query: 13 GYDNEPQQSGVKIHLWPNKERNPGLDTAWLRA 44 GY N P Q GV +HL P + ++WL++ Sbjct: 3 GYRNSPPQRGVSMHL------GPPVQSSWLQS 80
BLAST of EMLSAG00000000142 vs. L. salmonis peptides
Match: EMLSAP00000000142 (pep:novel supercontig:LSalAtl2s:LSalAtl2s1021:140193:141338:-1 gene:EMLSAG00000000142 transcript:EMLSAT00000000142 description:"snap-LSalAtl2s1021-processed-gene-0.80") HSP 1 Score: 205.682 bits (522), Expect = 1.164e-69 Identity = 97/97 (100.00%), Postives = 97/97 (100.00%), Query Frame = 0 Query: 1 MATKFCAPGCGTGYDNEPQQSGVKIHLWPNKERNPGLDTAWLRAITRETDLKKMDQAPSKSTKLRSLHFNDSDFICESKRSQTLGKALKKRCDYFRS 97 MATKFCAPGCGTGYDNEPQQSGVKIHLWPNKERNPGLDTAWLRAITRETDLKKMDQAPSKSTKLRSLHFNDSDFICESKRSQTLGKALKKRCDYFRS Sbjct: 1 MATKFCAPGCGTGYDNEPQQSGVKIHLWPNKERNPGLDTAWLRAITRETDLKKMDQAPSKSTKLRSLHFNDSDFICESKRSQTLGKALKKRCDYFRS 97
BLAST of EMLSAG00000000142 vs. L. salmonis peptides
Match: EMLSAP00000002611 (pep:novel supercontig:LSalAtl2s:LSalAtl2s151:424347:426407:1 gene:EMLSAG00000002611 transcript:EMLSAT00000002611 description:"augustus-LSalAtl2s151-processed-gene-4.1") HSP 1 Score: 59.3066 bits (142), Expect = 1.434e-11 Identity = 31/78 (39.74%), Postives = 48/78 (61.54%), Query Frame = 0 Query: 1 MATKFCAPGCGTGYDNEPQQSGVKIHLWPNKERNPGLDTAWLRAITRETDLKKMDQAPSKSTKLRSLHFNDSDFICES 78 M K C P C +GYD +P + + +H +P + + G AWLRAI R+++ APSK +++ SLHF++ DF+ ES Sbjct: 138 MPNKCCVPKCTSGYDGKPSIARLSLHSFPLDKSSKG---AWLRAIPRDSN---GTWAPSKYSRVCSLHFHEDDFVYES 209
BLAST of EMLSAG00000000142 vs. L. salmonis peptides
Match: EMLSAP00000010046 (pep:novel supercontig:LSalAtl2s:LSalAtl2s661:385852:386678:-1 gene:EMLSAG00000010046 transcript:EMLSAT00000010046 description:"augustus-LSalAtl2s661-processed-gene-2.10") HSP 1 Score: 52.373 bits (124), Expect = 9.892e-10 Identity = 30/80 (37.50%), Postives = 44/80 (55.00%), Query Frame = 0 Query: 1 MATKFCAPGCGTGYDNEPQQSGVKIHLWP--NKERNPGLDTAWLRAITRETDLKKMDQAPSKSTKLRSLHFNDSDFICES 78 M K APGC GYD+ P+ + V H++P N N L++ W AI R+ +K+++L SLHF +SD+I S Sbjct: 1 MGWKCSAPGCRQGYDDTPKNTTVLFHIFPRFNVPPNLELESRWESAIPRQKTF-------TKNSRLCSLHFTESDYITHS 73
BLAST of EMLSAG00000000142 vs. L. salmonis peptides
Match: EMLSAP00000012721 (pep:novel supercontig:LSalAtl2s:LSalAtl2s965:308987:310501:-1 gene:EMLSAG00000012721 transcript:EMLSAT00000012721 description:"augustus-LSalAtl2s965-processed-gene-3.12") HSP 1 Score: 47.7506 bits (112), Expect = 1.129e-7 Identity = 30/96 (31.25%), Postives = 49/96 (51.04%), Query Frame = 0 Query: 1 MATKFCAPGCGTGYDNEPQQSGVKIHLWPNKERNPGLDTAWLRAITRETDLKKMDQAPSKSTKLRSLHFNDSDFICES-----KRSQTLGKALKKR 91 M C P C + Y ++ GV +H++P ++ + AWL A++ + K + PS +++ SLHF+D F+ ES K QT K L +R Sbjct: 1 MPNNCCIPHCKSRYKGYLKRYGVTLHVFP---KDASIKDAWLHAVSSQM---KGEYEPSIYSRVCSLHFDDQSFVNESSDERRKYRQTSSKQLVRR 90
BLAST of EMLSAG00000000142 vs. L. salmonis peptides
Match: EMLSAP00000012818 (pep:novel supercontig:LSalAtl2s:LSalAtl2s977:162868:163832:-1 gene:EMLSAG00000012818 transcript:EMLSAT00000012818 description:"snap-LSalAtl2s977-processed-gene-1.30") HSP 1 Score: 42.743 bits (99), Expect = 5.167e-7 Identity = 19/50 (38.00%), Postives = 30/50 (60.00%), Query Frame = 0 Query: 1 MATKFCAPGCGTGYDNEPQQSGVKIHLWPNKERNPGLDTAWLRAITRETD 50 M K C P C +GYD +P + + +H +P E + G+ WLRAI R+++ Sbjct: 12 MPNKCCVPKCSSGYDGKPAIARLSLHSFPLDESSKGV---WLRAIPRDSN 58 The following BLAST results are available for this feature:
BLAST of EMLSAG00000000142 vs. GO
Analysis Date: 2014-04-02 (Blast vs. GO) Total hits: 0
BLAST of EMLSAG00000000142 vs. C. finmarchicus
Analysis Date: 2014-05-09 (TblastN vs C. finmarchicus TSA) Total hits: 12
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BLAST of EMLSAG00000000142 vs. L. salmonis peptides
Analysis Date: 2014-05-10 (Blastp vs. self) Total hits: 5
BLAST of EMLSAG00000000142 vs. SwissProt
Analysis Date: 2017-02-10 (Blastp vs. SwissProt) Total hits: 0
BLAST of EMLSAG00000000142 vs. Select Arthropod Genomes
Analysis Date: 2017-02-20 (Blastp vs. Selected Arthropods) Total hits: 0
BLAST of EMLSAG00000000142 vs. nr
Analysis Date: 2017-02-20 (Blastp vs. NR (2/2017)) Total hits: 0
BLAST of EMLSAG00000000142 vs. Tigriopus kingsejongenis genes
Analysis Date: 2018-04-18 (Blastp vs. Tigriopus kingsejongensis proteins) Total hits: 0
Alignments
The following features are aligned
Analyses
This gene is derived from or has results from the following analyses
Properties
Cross References
External references for this gene
Relationships
The following mRNA feature(s) are a part of this gene:
Sequences
The following sequences are available for this feature:
gene from alignment at LSalAtl2s1021:140193..141338- Legend: mRNA Hold the cursor over a type above to highlight its positions in the sequence below.>EMLSAG00000000142-682908 ID=EMLSAG00000000142-682908|Name=EMLSAG00000000142|organism=Lepeophtheirus salmonis|type=gene|length=1146bp|location=Sequence derived from alignment at LSalAtl2s1021:140193..141338- (Lepeophtheirus salmonis)back to top Add to Basket
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