EMLSAG00000000142, EMLSAG00000000142-682908 (gene) Lepeophtheirus salmonis

Overview
NameEMLSAG00000000142
Unique NameEMLSAG00000000142-682908
Typegene
OrganismLepeophtheirus salmonis (salmon louse)
Associated RNAi Experiments

Nothing found

Homology
BLAST of EMLSAG00000000142 vs. C. finmarchicus
Match: gi|592762632|gb|GAXK01191781.1| (TSA: Calanus finmarchicus comp41299_c0_seq1 transcribed RNA sequence)

HSP 1 Score: 27.335 bits (59), Expect = 8.739e+0
Identity = 11/23 (47.83%), Postives = 17/23 (73.91%), Query Frame = 0
Query:   34 NPGLDTAWLRAITRETDLKKMDQ 56
            N G+D  +LR I ++T+L K+DQ
Sbjct: 2420 NSGVDPNFLRKIKKKTELSKLDQ 2488          
BLAST of EMLSAG00000000142 vs. C. finmarchicus
Match: gi|592756239|gb|GAXK01198174.1| (TSA: Calanus finmarchicus comp7143334_c0_seq1 transcribed RNA sequence)

HSP 1 Score: 26.9498 bits (58), Expect = 9.374e+0
Identity = 12/32 (37.50%), Postives = 18/32 (56.25%), Query Frame = 0
Query:   13 GYDNEPQQSGVKIHLWPNKERNPGLDTAWLRA 44
            GY N P Q GV +HL       P + ++WL++
Sbjct:    3 GYRNSPPQRGVSMHL------GPPVQSSWLQS 80          
BLAST of EMLSAG00000000142 vs. L. salmonis peptides
Match: EMLSAP00000000142 (pep:novel supercontig:LSalAtl2s:LSalAtl2s1021:140193:141338:-1 gene:EMLSAG00000000142 transcript:EMLSAT00000000142 description:"snap-LSalAtl2s1021-processed-gene-0.80")

HSP 1 Score: 205.682 bits (522), Expect = 1.164e-69
Identity = 97/97 (100.00%), Postives = 97/97 (100.00%), Query Frame = 0
Query:    1 MATKFCAPGCGTGYDNEPQQSGVKIHLWPNKERNPGLDTAWLRAITRETDLKKMDQAPSKSTKLRSLHFNDSDFICESKRSQTLGKALKKRCDYFRS 97
            MATKFCAPGCGTGYDNEPQQSGVKIHLWPNKERNPGLDTAWLRAITRETDLKKMDQAPSKSTKLRSLHFNDSDFICESKRSQTLGKALKKRCDYFRS
Sbjct:    1 MATKFCAPGCGTGYDNEPQQSGVKIHLWPNKERNPGLDTAWLRAITRETDLKKMDQAPSKSTKLRSLHFNDSDFICESKRSQTLGKALKKRCDYFRS 97          
BLAST of EMLSAG00000000142 vs. L. salmonis peptides
Match: EMLSAP00000002611 (pep:novel supercontig:LSalAtl2s:LSalAtl2s151:424347:426407:1 gene:EMLSAG00000002611 transcript:EMLSAT00000002611 description:"augustus-LSalAtl2s151-processed-gene-4.1")

HSP 1 Score: 59.3066 bits (142), Expect = 1.434e-11
Identity = 31/78 (39.74%), Postives = 48/78 (61.54%), Query Frame = 0
Query:    1 MATKFCAPGCGTGYDNEPQQSGVKIHLWPNKERNPGLDTAWLRAITRETDLKKMDQAPSKSTKLRSLHFNDSDFICES 78
            M  K C P C +GYD +P  + + +H +P  + + G   AWLRAI R+++      APSK +++ SLHF++ DF+ ES
Sbjct:  138 MPNKCCVPKCTSGYDGKPSIARLSLHSFPLDKSSKG---AWLRAIPRDSN---GTWAPSKYSRVCSLHFHEDDFVYES 209          
BLAST of EMLSAG00000000142 vs. L. salmonis peptides
Match: EMLSAP00000010046 (pep:novel supercontig:LSalAtl2s:LSalAtl2s661:385852:386678:-1 gene:EMLSAG00000010046 transcript:EMLSAT00000010046 description:"augustus-LSalAtl2s661-processed-gene-2.10")

HSP 1 Score: 52.373 bits (124), Expect = 9.892e-10
Identity = 30/80 (37.50%), Postives = 44/80 (55.00%), Query Frame = 0
Query:    1 MATKFCAPGCGTGYDNEPQQSGVKIHLWP--NKERNPGLDTAWLRAITRETDLKKMDQAPSKSTKLRSLHFNDSDFICES 78
            M  K  APGC  GYD+ P+ + V  H++P  N   N  L++ W  AI R+          +K+++L SLHF +SD+I  S
Sbjct:    1 MGWKCSAPGCRQGYDDTPKNTTVLFHIFPRFNVPPNLELESRWESAIPRQKTF-------TKNSRLCSLHFTESDYITHS 73          
BLAST of EMLSAG00000000142 vs. L. salmonis peptides
Match: EMLSAP00000012721 (pep:novel supercontig:LSalAtl2s:LSalAtl2s965:308987:310501:-1 gene:EMLSAG00000012721 transcript:EMLSAT00000012721 description:"augustus-LSalAtl2s965-processed-gene-3.12")

HSP 1 Score: 47.7506 bits (112), Expect = 1.129e-7
Identity = 30/96 (31.25%), Postives = 49/96 (51.04%), Query Frame = 0
Query:    1 MATKFCAPGCGTGYDNEPQQSGVKIHLWPNKERNPGLDTAWLRAITRETDLKKMDQAPSKSTKLRSLHFNDSDFICES-----KRSQTLGKALKKR 91
            M    C P C + Y    ++ GV +H++P   ++  +  AWL A++ +    K +  PS  +++ SLHF+D  F+ ES     K  QT  K L +R
Sbjct:    1 MPNNCCIPHCKSRYKGYLKRYGVTLHVFP---KDASIKDAWLHAVSSQM---KGEYEPSIYSRVCSLHFDDQSFVNESSDERRKYRQTSSKQLVRR 90          
BLAST of EMLSAG00000000142 vs. L. salmonis peptides
Match: EMLSAP00000012818 (pep:novel supercontig:LSalAtl2s:LSalAtl2s977:162868:163832:-1 gene:EMLSAG00000012818 transcript:EMLSAT00000012818 description:"snap-LSalAtl2s977-processed-gene-1.30")

HSP 1 Score: 42.743 bits (99), Expect = 5.167e-7
Identity = 19/50 (38.00%), Postives = 30/50 (60.00%), Query Frame = 0
Query:    1 MATKFCAPGCGTGYDNEPQQSGVKIHLWPNKERNPGLDTAWLRAITRETD 50
            M  K C P C +GYD +P  + + +H +P  E + G+   WLRAI R+++
Sbjct:   12 MPNKCCVPKCSSGYDGKPAIARLSLHSFPLDESSKGV---WLRAIPRDSN 58          
The following BLAST results are available for this feature:
BLAST of EMLSAG00000000142 vs. GO
Analysis Date: 2014-04-02 (Blast vs. GO)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
BLAST of EMLSAG00000000142 vs. C. finmarchicus
Analysis Date: 2014-05-09 (TblastN vs C. finmarchicus TSA)
Total hits: 12
Match NameE-valueIdentityDescription
gi|592762632|gb|GAXK01191781.1|8.739e+047.83TSA: Calanus finmarchicus comp41299_c0_seq1 transc... [more]
gi|592756239|gb|GAXK01198174.1|9.374e+037.50TSA: Calanus finmarchicus comp7143334_c0_seq1 tran... [more]

Pages

back to top
BLAST of EMLSAG00000000142 vs. L. salmonis peptides
Analysis Date: 2014-05-10 (Blastp vs. self)
Total hits: 5
Match NameE-valueIdentityDescription
EMLSAP000000001421.164e-69100.00pep:novel supercontig:LSalAtl2s:LSalAtl2s1021:1401... [more]
EMLSAP000000026111.434e-1139.74pep:novel supercontig:LSalAtl2s:LSalAtl2s151:42434... [more]
EMLSAP000000100469.892e-1037.50pep:novel supercontig:LSalAtl2s:LSalAtl2s661:38585... [more]
EMLSAP000000127211.129e-731.25pep:novel supercontig:LSalAtl2s:LSalAtl2s965:30898... [more]
EMLSAP000000128185.167e-738.00pep:novel supercontig:LSalAtl2s:LSalAtl2s977:16286... [more]
back to top
BLAST of EMLSAG00000000142 vs. SwissProt
Analysis Date: 2017-02-10 (Blastp vs. SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
BLAST of EMLSAG00000000142 vs. Select Arthropod Genomes
Analysis Date: 2017-02-20 (Blastp vs. Selected Arthropods)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
BLAST of EMLSAG00000000142 vs. nr
Analysis Date: 2017-02-20 (Blastp vs. NR (2/2017))
Total hits: 0
Match NameE-valueIdentityDescription
back to top
BLAST of EMLSAG00000000142 vs. Tigriopus kingsejongenis genes
Analysis Date: 2018-04-18 (Blastp vs. Tigriopus kingsejongensis proteins)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
LSalAtl2s1021supercontigLSalAtl2s1021:140193..141338 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
ensembl2013-09-26 .965016
Blast vs. GO2014-04-02
TblastN vs C. finmarchicus TSA2014-05-09
Blastp vs. self2014-05-10
Blastp vs. SwissProt2017-02-10
Blastp vs. Selected Arthropods2017-02-20
Blastp vs. NR (2/2017)2017-02-20
Blastp vs. Tigriopus kingsejongensis proteins2018-04-18
Properties
Property NameValue
Logic nameensemblgenomes
Descriptionsnap-LSalAtl2s1021-processed-gene-0.80
Biotypeprotein_coding
EvidenceIEA
NoteHypothetical protein
Cross References
External references for this gene
DatabaseAccession
Ensembl Metazoa (gene)EMLSAG00000000142 (primary cross-reference)
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
EMLSAT00000000142EMLSAT00000000142-695989Lepeophtheirus salmonismRNA


Sequences
The following sequences are available for this feature:

gene from alignment at LSalAtl2s1021:140193..141338-

Legend: mRNA
Hold the cursor over a type above to highlight its positions in the sequence below.
>EMLSAG00000000142-682908 ID=EMLSAG00000000142-682908|Name=EMLSAG00000000142|organism=Lepeophtheirus salmonis|type=gene|length=1146bp|location=Sequence derived from alignment at LSalAtl2s1021:140193..141338- (Lepeophtheirus salmonis)
ATGGCCACTAAGTTTTGTGCTCCAGGGTGTGGAACGGGCTATGACAACGA GCCACAACAGTCTGGTGTTAAGATCCATCTATGGCCAAACAAAGAGAGAA ACCCCGGACTTGATACCGCCTGGCTGAGAGCCATTACAAGAGAAACAGAT CTGAAGAAGATGGATCAGGCACCATCTAAAAGTACAAAGCTGCGTTCCCT GCATTTCAACGACTCTGATTTCATCTGTGAGTCTAAAAGAAGTCAGACCC TTGGCAAGGCTCTAAAGAAGAGGTAAGATAGCTGCTCACTTTTGATGCGT ATGCTTATAACTTTACAGGTACCTCAAACCCGATATAGTATCATCCCTAT GGCCAAACTGTCCCAACTACCTCTCAACTCCTAAAGCGTCATCAAGGCCA ACTTAAGCTGCGAACAAGTCACGTAGGGCTCAACAGTTACAATNTGCTCA CTTTTGATGCGTATGCTTATAACTTTACAGGTACCTCAAACCCGATATAG TATCATCCCTATGGCCAAACTGTCCCAACTACCTCTCAACTCCTAAAGCG TCATCAAGGCCAACTTAAGCTGCGAACAAGTCACGTAGGGCTCAACAGTT CAATAACCTAAACAACACCTGGAATTTGAACTCTTGAATGAGGACTCTGG AAGAACTTGGTCACAAATTGGCCAAGGAGACACTCCCCTCCTCATCACAA AACCAAGTGTTGCCCTTTTGAAGCTATCCCATGATGAGAAATTGGGCCCC CAAGTAGTAGCCAGCATCTAGTTTGAGACAGATATGTCATTCAAAATGAA TCACTCTGGGTGTTGATTGACAAAAAGGTAGTGTCACACATCMCCTCAGA AAGCAAAGTCAACACTGTGATTCAAGCCATCAATTTGTCTTCCTTTTTGG GAGCAAAAGAAGAATTGAATCAAACAGAGACCTGGGAAGACATTCTCAAC AAGTTAGTGAAGTTTCTCAACTCCTCAGAGATTGAACCTACACAAGTATT CTGAGTCTTGTCAAATTCTGAGGTAAATAAGATATTTGTTAATTGTAAGC TTCTTTATTTAGGTATTACTTATTTTTACAATATATTAATATCATTACAA TATTTTACTTTTTTAAATTTTCAGGTGTGATTACTTCAGAAGTTAA
back to top
Add to Basket