EMLSAG00000000311, EMLSAG00000000311-683077 (gene) Lepeophtheirus salmonis

Overview
NameEMLSAG00000000311
Unique NameEMLSAG00000000311-683077
Typegene
OrganismLepeophtheirus salmonis (salmon louse)
Associated RNAi Experiments

Nothing found

Homology
[Close]
BLAST of EMLSAG00000000311 vs. C. finmarchicus
Match: gi|592932370|gb|GAXK01026183.1| (TSA: Calanus finmarchicus comp18158_c2_seq8 transcribed RNA sequence)

HSP 1 Score: 65.0846 bits (157), Expect = 3.126e-12
Identity = 36/65 (55.38%), Postives = 40/65 (61.54%), Query Frame = 0 
Query:   58 CNCQXISLTFRDSRGTIHGNCKSMIN-GAQWCYVKYDRFSPCPDLR-ASQRFRGRYWSNHACATP 120
            C CQ  +LTFRD  G  HGNCKS  + GA WCYV   + S C DL   S RF G+ WS  ACATP
Sbjct:    7 CGCQCSNLTFRDKYGKTHGNCKSSDHTGAVWCYVSPAQTSSCQDLSYTSTRFPGKPWSYEACATP 201
[Close]
BLAST of EMLSAG00000000311 vs. C. finmarchicus
Match: gi|592932373|gb|GAXK01026180.1| (TSA: Calanus finmarchicus comp18158_c2_seq5 transcribed RNA sequence)

HSP 1 Score: 65.0846 bits (157), Expect = 3.337e-12
Identity = 36/66 (54.55%), Postives = 40/66 (60.61%), Query Frame = 0 
Query:   58 CNCQXISLTFRDSRGTIHGNCKSMIN-GAQWCYVKYDRFSPCPDLR-ASQRFRGRYWSNHACATPP 121
            C CQ  +LTFRD  G  HGNCKS  + GA WCYV   + S C DL   S RF G+ WS  ACATP 
Sbjct:    7 CGCQCSNLTFRDKYGKTHGNCKSSDHTGAVWCYVSPAQTSSCQDLSYTSTRFPGKPWSYEACATPA 204
[Close]
BLAST of EMLSAG00000000311 vs. C. finmarchicus
Match: gi|592848675|gb|GAXK01108869.1| (TSA: Calanus finmarchicus comp296545_c0_seq2 transcribed RNA sequence)

HSP 1 Score: 63.1586 bits (152), Expect = 3.806e-12
Identity = 34/64 (53.12%), Postives = 38/64 (59.38%), Query Frame = 0 
Query:   58 CNCQXISLTFRDSRGTIHGNCKSMIN-GAQWCYVKYDRFSPCPDLRASQRFRGRYWSNHACATP 120
            C+CQ  SLTF+D  G I GNC S  + GA+WCYV     S C DL  S RF    WS  ACATP
Sbjct:  220 CDCQCSSLTFQDKYGRIQGNCNSADHTGARWCYVDSAHHSSCQDLHHSARFPQNPWSYEACATP 411
[Close]
BLAST of EMLSAG00000000311 vs. C. finmarchicus
Match: gi|592932374|gb|GAXK01026179.1| (TSA: Calanus finmarchicus comp18158_c2_seq4 transcribed RNA sequence)

HSP 1 Score: 65.0846 bits (157), Expect = 3.838e-12
Identity = 36/65 (55.38%), Postives = 40/65 (61.54%), Query Frame = 0 
Query:   58 CNCQXISLTFRDSRGTIHGNCKSMIN-GAQWCYVKYDRFSPCPDLR-ASQRFRGRYWSNHACATP 120
            C CQ  +LTFRD  G  HGNCKS  + GA WCYV   + S C DL   S RF G+ WS  ACATP
Sbjct:    7 CGCQCSNLTFRDKYGKTHGNCKSSDHTGAVWCYVSPAQTSSCQDLSYTSTRFPGKPWSYEACATP 201
[Close]
BLAST of EMLSAG00000000311 vs. C. finmarchicus
Match: gi|592811147|gb|GAXK01143421.1| (TSA: Calanus finmarchicus comp1067486_c0_seq1 transcribed RNA sequence)

HSP 1 Score: 63.5438 bits (153), Expect = 4.003e-12
Identity = 36/76 (47.37%), Postives = 46/76 (60.53%), Query Frame = 0 
Query:   58 CNCQXISLTF--RDSRGTIHGNCKSM-INGAQWCYVKYDRFSPCPDLRASQRFRGRYWSNHACATPPENSPICSSE 130
            C CQ  SLT+  +D++ T+ GNC S   NGA WCYV     S C DL+ S+RF    WS  AC TPP +S +CS +
Sbjct:  133 CGCQCSSLTYQLKDAQSTVQGNCMSADPNGAVWCYVD-SLSSTCRDLQPSKRFPNNPWSYEACTTPPRDSHLCSGQ 357
[Close]
BLAST of EMLSAG00000000311 vs. C. finmarchicus
Match: gi|592932372|gb|GAXK01026181.1| (TSA: Calanus finmarchicus comp18158_c2_seq6 transcribed RNA sequence)

HSP 1 Score: 64.6994 bits (156), Expect = 4.365e-12
Identity = 36/65 (55.38%), Postives = 40/65 (61.54%), Query Frame = 0 
Query:   58 CNCQXISLTFRDSRGTIHGNCKSMIN-GAQWCYVKYDRFSPCPDLR-ASQRFRGRYWSNHACATP 120
            C CQ  +LTFRD  G  HGNCKS  + GA WCYV   + S C DL   S RF G+ WS  ACATP
Sbjct:    7 CGCQCSNLTFRDKYGKTHGNCKSSDHTGAVWCYVSPAQTSSCQDLSYTSTRFPGKPWSYEACATP 201
[Close]
BLAST of EMLSAG00000000311 vs. C. finmarchicus
Match: gi|592932375|gb|GAXK01026178.1| (TSA: Calanus finmarchicus comp18158_c2_seq3 transcribed RNA sequence)

HSP 1 Score: 65.0846 bits (157), Expect = 4.543e-12
Identity = 36/65 (55.38%), Postives = 40/65 (61.54%), Query Frame = 0 
Query:   58 CNCQXISLTFRDSRGTIHGNCKSMIN-GAQWCYVKYDRFSPCPDLR-ASQRFRGRYWSNHACATP 120
            C CQ  +LTFRD  G  HGNCKS  + GA WCYV   + S C DL   S RF G+ WS  ACATP
Sbjct:    7 CGCQCSNLTFRDKYGKTHGNCKSSDHTGAVWCYVSPAQTSSCQDLSYTSTRFPGKPWSYEACATP 201
[Close]
BLAST of EMLSAG00000000311 vs. C. finmarchicus
Match: gi|592932377|gb|GAXK01026176.1| (TSA: Calanus finmarchicus comp18158_c2_seq1 transcribed RNA sequence)

HSP 1 Score: 64.6994 bits (156), Expect = 5.182e-12
Identity = 36/65 (55.38%), Postives = 40/65 (61.54%), Query Frame = 0 
Query:   58 CNCQXISLTFRDSRGTIHGNCKSMIN-GAQWCYVKYDRFSPCPDLR-ASQRFRGRYWSNHACATP 120
            C CQ  +LTFRD  G  HGNCKS  + GA WCYV   + S C DL   S RF G+ WS  ACATP
Sbjct:    7 CGCQCSNLTFRDKYGKTHGNCKSSDHTGAVWCYVSPAQTSSCQDLSYTSTRFPGKPWSYEACATP 201
[Close]
BLAST of EMLSAG00000000311 vs. C. finmarchicus
Match: gi|592932376|gb|GAXK01026177.1| (TSA: Calanus finmarchicus comp18158_c2_seq2 transcribed RNA sequence)

HSP 1 Score: 64.6994 bits (156), Expect = 5.828e-12
Identity = 36/65 (55.38%), Postives = 40/65 (61.54%), Query Frame = 0 
Query:   58 CNCQXISLTFRDSRGTIHGNCKSMIN-GAQWCYVKYDRFSPCPDLR-ASQRFRGRYWSNHACATP 120
            C CQ  +LTFRD  G  HGNCKS  + GA WCYV   + S C DL   S RF G+ WS  ACATP
Sbjct:    7 CGCQCSNLTFRDKYGKTHGNCKSSDHTGAVWCYVSPAQTSSCQDLSYTSTRFPGKPWSYEACATP 201
[Close]
BLAST of EMLSAG00000000311 vs. C. finmarchicus
Match: gi|592932367|gb|GAXK01026186.1| (TSA: Calanus finmarchicus comp18158_c2_seq11 transcribed RNA sequence)

HSP 1 Score: 62.7734 bits (151), Expect = 7.809e-12
Identity = 35/65 (53.85%), Postives = 39/65 (60.00%), Query Frame = 0 
Query:   58 CNCQXISLTFRDSRGTIHGNCKSMI-NGAQWCYVKYDRFSPCPDLR-ASQRFRGRYWSNHACATP 120
            C CQ  +LTF+D  G  HGNCK +   GAQWCYV   R   C DL   S RF G+ WS  ACATP
Sbjct:  256 CGCQCSNLTFKDKYGNTHGNCKRVDHTGAQWCYVD-PRQGSCQDLSYTSTRFPGKPWSYEACATP 447
[Close]
BLAST of EMLSAG00000000311 vs. L. salmonis peptides
Match: EMLSAP00000002890 (pep:novel supercontig:LSalAtl2s:LSalAtl2s166:445712:450389:1 gene:EMLSAG00000002890 transcript:EMLSAT00000002890 description:"maker-LSalAtl2s166-augustus-gene-4.9")

HSP 1 Score: 57.3806 bits (137), Expect = 2.440e-11
Identity = 36/97 (37.11%), Postives = 48/97 (49.48%), Query Frame = 0 
Query:   25 IKFLLLSGVLVGFVHAQNKKQAAAAAPDPGGDDCNCQXISLTFRDSRGTIHGNC-KSMINGAQWCYVKYDRFSPCPDLRASQRFRGRYWSNHACATP 120
            IK  L+  ++  F+   N  Q    +P     +C CQ  S TF D +G   GNC  S   G +WCYV Y   + C D   S R+ G+ WS  AC+TP
Sbjct:    2 IKIQLIKTLVCMFLSMLNLTQGQLRSPSLY-QNCGCQCNSYTFSDIKGYTQGNCFSSDFTGGRWCYVDYG--NTCHDAVPSLRYNGQ-WSYEACSTP 94
[Close]
BLAST of EMLSAG00000000311 vs. L. salmonis peptides
Match: EMLSAP00000007122 (pep:novel supercontig:LSalAtl2s:LSalAtl2s401:64891:74089:-1 gene:EMLSAG00000007122 transcript:EMLSAT00000007122 description:"maker-LSalAtl2s401-augustus-gene-0.13")

HSP 1 Score: 56.9954 bits (136), Expect = 4.735e-11
Identity = 43/100 (43.00%), Postives = 50/100 (50.00%), Query Frame = 0 
Query:   26 KFLLLSGVLVGFVHAQNKKQAAAAAPDPGGDDCNCQXISLTFRDSRGTIHGNCKSM-INGAQWCYVKYDRFSPCPDLRASQR----FRGRYWSNHACATP 120
            KFL++S V+V    AQ+       AP     +C CQ  +  FRD RG   GNC S    GA+WCYV  DR   C D R S R     R R  S  ACATP
Sbjct:  102 KFLIIS-VVVALTSAQD---ITLKAPSLA-VNCGCQCSNYIFRDLRGITQGNCNSADRTGAKWCYV--DRGHTCQDTRGSGRKDQFGRRRQISYEACATP 194

HSP 2 Score: 48.521 bits (114), Expect = 6.914e-8
Identity = 34/82 (41.46%), Postives = 41/82 (50.00%), Query Frame = 0 
Query:   26 KFLLLSGVLVGFVHAQNKKQAAAAAPDPGGDDCNCQXISLTFRDSRGTIHGNCKSM-INGAQWCYVKYDRFSPCPDLRASQR 106
            K L++S V+V    AQ+       AP     +C CQ  +  FRD RG   GNC S    GA+WCYV  DR   C D R S R
Sbjct:    4 KILIIS-VVVALTSAQD---ITLKAPSLA-VNCGCQCSNYIFRDLRGITQGNCNSADQTGAKWCYV--DRGHTCQDTRGSGR 78
[Close]
BLAST of EMLSAG00000000311 vs. L. salmonis peptides
Match: EMLSAP00000012322 (pep:novel supercontig:LSalAtl2s:LSalAtl2s8:1311290:1311781:1 gene:EMLSAG00000012322 transcript:EMLSAT00000012322 description:"augustus_masked-LSalAtl2s8-processed-gene-15.4")

HSP 1 Score: 56.225 bits (134), Expect = 7.698e-11
Identity = 39/96 (40.62%), Postives = 51/96 (53.12%), Query Frame = 0 
Query:   26 KFLLLSGVLVGFVHAQNKKQAAAAAPDPGGDDCNCQXISLTFRDSRGTIHGNCKSM-INGAQWCYVKYDRFSPCPDLRASQRFRGRYWSNHACATP 120
            K +LLS  LV +V +Q     A +       +C CQ  S  FRD  G   GNC+S   +GA+WC+V+    + C D   +  FRGR  SN ACATP
Sbjct:    4 KIILLS-ALVAYVTSQGITLKAPSLAI----NCGCQCDSFIFRDRFGQTQGNCRSTDRSGARWCFVRPG--NTCTD---TSFFRGRTISNEACATP 89
[Close]
BLAST of EMLSAG00000000311 vs. L. salmonis peptides
Match: EMLSAP00000001015 (pep:novel supercontig:LSalAtl2s:LSalAtl2s116:786764:792986:-1 gene:EMLSAG00000001015 transcript:EMLSAT00000001015 description:"maker-LSalAtl2s116-augustus-gene-8.13")

HSP 1 Score: 53.1434 bits (126), Expect = 2.038e-9
Identity = 40/100 (40.00%), Postives = 48/100 (48.00%), Query Frame = 0 
Query:   26 KFLLLSGVLVGFVHAQNKKQAAAAAPDPGGDDCNCQXISLTFRDSRGTIHGNCKSM-INGAQWCYVKYDRFSPCPDLRASQRF----RGRYWSNHACATP 120
            K L+LS + V F  AQ+    A +       +C CQ  +  FRD  G   GNC S    GA+WCYV  +R   C D R S R     R R  S  ACATP
Sbjct:    4 KILILS-IFVAFGSAQDITLKAPSLAV----NCGCQCSNYIFRDGNGITQGNCNSADRTGAKWCYV--ERGHTCQDTRRSXRRDNFGRLRQISYEACATP 96
[Close]
BLAST of EMLSAG00000000311 vs. L. salmonis peptides
Match: EMLSAP00000007117 (pep:novel supercontig:LSalAtl2s:LSalAtl2s401:30551:49956:-1 gene:EMLSAG00000007117 transcript:EMLSAT00000007117 description:"maker-LSalAtl2s401-augustus-gene-0.12")

HSP 1 Score: 51.9878 bits (123), Expect = 5.324e-9
Identity = 40/100 (40.00%), Postives = 48/100 (48.00%), Query Frame = 0 
Query:   26 KFLLLSGVLVGFVHAQNKKQAAAAAPDPGGDDCNCQXISLTFRDSRGTIHGNCKSM-INGAQWCYVKYDRFSPCPDLRASQR----FRGRYWSNHACATP 120
            K L++S V+V    AQ+    A +       +C CQ  +  FRD RG   GNC S    GA+WCYV  DR   C D   S R     R R  S  ACATP
Sbjct:   59 KILIIS-VVVALTSAQDITLKAPSLAV----NCGCQCSNYIFRDLRGITQGNCNSADQTGAKWCYV--DRGHTCQDTIGSARNDQFGRRRQISYEACATP 151
[Close]
BLAST of EMLSAG00000000311 vs. L. salmonis peptides
Match: EMLSAP00000005421 (pep:novel supercontig:LSalAtl2s:LSalAtl2s292:107272:109821:1 gene:EMLSAG00000005421 transcript:EMLSAT00000005421 description:"maker-LSalAtl2s292-snap-gene-1.3")

HSP 1 Score: 48.9062 bits (115), Expect = 1.479e-8
Identity = 20/45 (44.44%), Postives = 28/45 (62.22%), Query Frame = 0 
Query:   85 AQWCYVKYDRFSPCPDLRASQRFRGRYWSNHACATPPENSPICSS 129
             ++CYV  D  SPC DL+ S +F G+Y S HAC TP  ++ +C  
Sbjct:   39 GKFCYVVGDSKSPCVDLKPSTQFMGKYISKHACLTPHLDTFLCKK 83
[Close]
BLAST of EMLSAG00000000311 vs. L. salmonis peptides
Match: EMLSAP00000001011 (pep:novel supercontig:LSalAtl2s:LSalAtl2s116:644091:644652:-1 gene:EMLSAG00000001011 transcript:EMLSAT00000001011 description:"maker-LSalAtl2s116-augustus-gene-6.17")

HSP 1 Score: 45.8246 bits (107), Expect = 4.082e-7
Identity = 38/100 (38.00%), Postives = 47/100 (47.00%), Query Frame = 0 
Query:   26 KFLLLSGVLVGFVHAQNKKQAAAAAPDPGGDDCNCQXISLTFRDSRGTIHGNCKSM-INGAQWCYVKYDRFSPCPDLRASQRF----RGRYWSNHACATP 120
            K L+LS + V F  AQ+    A +       +C CQ  +  FRD  G   GNC S    GA++CYV+        D R S R     R R  SN ACATP
Sbjct:    4 KILILS-IFVAFGSAQDITLKAPSLAV----NCGCQCSNYIFRDGNGITQGNCNSADRTGAKFCYVEPG--XTXQDTRRSGRRDXFGRFRQISNEACATP 96
[Close]
BLAST of EMLSAG00000000311 vs. L. salmonis peptides
Match: EMLSAP00000012320 (pep:novel supercontig:LSalAtl2s:LSalAtl2s8:1270069:1270443:1 gene:EMLSAG00000012320 transcript:EMLSAT00000012320 description:"augustus_masked-LSalAtl2s8-processed-gene-15.6")

HSP 1 Score: 44.669 bits (104), Expect = 5.875e-7
Identity = 26/47 (55.32%), Postives = 28/47 (59.57%), Query Frame = 0 
Query:   75 HGNCKSM-INGAQWCYVKYDRFSPCPDLRASQRFRGRYWSNHACATP 120
             GNC+S    GA+WCYV     S C DLR SQR   RY S  ACATP
Sbjct:    7 QGNCRSSDYTGARWCYVNVG--SSCNDLRQSQRGGYRYISYEACATP 51
[Close]
BLAST of EMLSAG00000000311 vs. nr
Match: gi|155966304|gb|ABU41105.1| (hypothetical protein [Lepeophtheirus salmonis])

HSP 1 Score: 103.219 bits (256), Expect = 2.005e-25
Identity = 50/102 (49.02%), Postives = 63/102 (61.76%), Query Frame = 0 
Query:   30 LSGVLVGFVHAQ----NKKQAAAAAPDPGGDDCNCQXISLTFRDSRGTIHGNCKSMINGAQWCYVKYDRFSPCPDLRASQRFRGRYWSNHACATPPENSPIC 127
            + G+ +G V A     +  Q  A AP     DC CQ I+L+F D  G   GNC+S  NGAQWCYV+ D +S CPDL+ S R+RG+Y+SNHAC T P  SP C
Sbjct:    1 MRGIYIGIVLATCVYWSNAQQFAPAPINSQADCQCQCIALSFYDEYGQQQGNCRSTFNGAQWCYVENDGYSSCPDLKRSTRYRGKYYSNHACITLPAYSPEC 102
[Close]
BLAST of EMLSAG00000000311 vs. Tigriopus kingsejongenis genes
Match: maker-scaffold381_size190066-snap-gene-0.31 (protein:Tk01605 transcript:maker-scaffold381_size190066-snap-gene-0.31-mRNA-1 annotation:"hypothetical protein")

HSP 1 Score: 62.3882 bits (150), Expect = 7.401e-13
Identity = 32/77 (41.56%), Postives = 42/77 (54.55%), Query Frame = 0 
Query:   57 DCNCQXISLTFRDSRGTIHGNCKSM-INGAQWCYVKYDRFSPCPDLRASQRF-----RGRYWSNHACATPPENSPIC 127
            +C CQ    T+RD+ G + GNC+S     A WCY+    F+ C D+R S+       R R WS  AC+TP   SPIC
Sbjct:   47 NCGCQCDPYTWRDTLGRVQGNCRSADATKALWCYIPASAFTSCADIRQSRNRLDNFGRPRRWSYEACSTPALTSPIC 123
[Close]
BLAST of EMLSAG00000000311 vs. Tigriopus kingsejongenis genes
Match: maker-scaffold82_size396747-snap-gene-2.41 (protein:Tk06844 transcript:maker-scaffold82_size396747-snap-gene-2.41-mRNA-1 annotation:"hypothetical protein")

HSP 1 Score: 58.151 bits (139), Expect = 6.157e-11
Identity = 37/93 (39.78%), Postives = 45/93 (48.39%), Query Frame = 0 
Query:   29 LLSGVLVGFVHAQNKKQA-AAAAPDPGGDDCNCQXISLTFRDSRGTIHGNCKSMINGAQWCYVKYDRFSPCPDLRASQRFRGRYWSNHACATP 120
             L  V+VG      K  + A A  +   D C+CQ  + TF+    T+HGNC     GA WCYVK    S C D   S R  G +WS  AC TP
Sbjct:  219 FLGEVVVGRCAILVKNASLAKAQSEITQDVCDCQCNNYTFK-FDNTLHGNCLQPYKGALWCYVKDFGQSTCIDRLESSRVSGLFWSFQACGTP 310
[Close]
BLAST of EMLSAG00000000311 vs. Tigriopus kingsejongenis genes
Match: maker-scaffold381_size190066-snap-gene-0.30 (protein:Tk01607 transcript:maker-scaffold381_size190066-snap-gene-0.30-mRNA-1 annotation:"hypothetical protein AN3340.2")

HSP 1 Score: 51.2174 bits (121), Expect = 9.259e-9
Identity = 31/77 (40.26%), Postives = 41/77 (53.25%), Query Frame = 0 
Query:   58 CNCQXISLTFRDSRGTIHGNCKSM-INGAQWCYVKYDRFS-PCPDLRASQRFRG-----RYWSNHACATPPENSPIC 127
            CNCQ  + T++     IHGNC S     A+WCYV  D++S  C D++ S+  R      R WS  AC+TP   S  C
Sbjct:   45 CNCQCDNYTYKGGDNQIHGNCFSADQTKAKWCYV--DQYSGECDDIQYSKNRRDSHGNLRKWSYQACSTPERASHQC 119
[Close]
BLAST of EMLSAG00000000311 vs. Tigriopus kingsejongenis genes
Match: maker-scaffold381_size190066-snap-gene-0.32 (protein:Tk01608 transcript:maker-scaffold381_size190066-snap-gene-0.32-mRNA-1 annotation:"---NA---")

HSP 1 Score: 47.7506 bits (112), Expect = 1.730e-7
Identity = 28/77 (36.36%), Postives = 42/77 (54.55%), Query Frame = 0 
Query:   58 CNCQXISLTFRDSRGTIHGNCKSMING-AQWCYVKYDRF-SPCPDLRASQRFRG-----RYWSNHACATPPENSPIC 127
            CNCQ  + T++     IHGNC +  +   +WCY+  D++ + C D++ S+  R      R WS  AC+TP   SP C
Sbjct:   47 CNCQCDNYTYKGDDNQIHGNCFTADHTRGKWCYL--DQYNNDCDDIQYSKNRRDSFGNLREWSYQACSTPQLGSPQC 121
The following BLAST results are available for this feature:
BLAST of EMLSAG00000000311 vs. GO
Analysis Date: 2014-04-02 (Blast vs. GO)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000000311 vs. C. finmarchicus
Analysis Date: 2014-05-09 (TblastN vs C. finmarchicus TSA)
Total hits: 25
Match NameE-valueIdentityDescription
gi|592932370|gb|GAXK01026183.1|3.126e-1255.38TSA: Calanus finmarchicus comp18158_c2_seq8 transc... [more]
gi|592932373|gb|GAXK01026180.1|3.337e-1254.55TSA: Calanus finmarchicus comp18158_c2_seq5 transc... [more]
gi|592848675|gb|GAXK01108869.1|3.806e-1253.13TSA: Calanus finmarchicus comp296545_c0_seq2 trans... [more]
gi|592932374|gb|GAXK01026179.1|3.838e-1255.38TSA: Calanus finmarchicus comp18158_c2_seq4 transc... [more]
gi|592811147|gb|GAXK01143421.1|4.003e-1247.37TSA: Calanus finmarchicus comp1067486_c0_seq1 tran... [more]
gi|592932372|gb|GAXK01026181.1|4.365e-1255.38TSA: Calanus finmarchicus comp18158_c2_seq6 transc... [more]
gi|592932375|gb|GAXK01026178.1|4.543e-1255.38TSA: Calanus finmarchicus comp18158_c2_seq3 transc... [more]
gi|592932377|gb|GAXK01026176.1|5.182e-1255.38TSA: Calanus finmarchicus comp18158_c2_seq1 transc... [more]
gi|592932376|gb|GAXK01026177.1|5.828e-1255.38TSA: Calanus finmarchicus comp18158_c2_seq2 transc... [more]
gi|592932367|gb|GAXK01026186.1|7.809e-1253.85TSA: Calanus finmarchicus comp18158_c2_seq11 trans... [more]

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BLAST of EMLSAG00000000311 vs. L. salmonis peptides
Analysis Date: 2014-05-10 (Blastp vs. self)
Total hits: 18
Match NameE-valueIdentityDescription
EMLSAP000000028902.440e-1137.11pep:novel supercontig:LSalAtl2s:LSalAtl2s166:44571... [more]
EMLSAP000000071224.735e-1143.00pep:novel supercontig:LSalAtl2s:LSalAtl2s401:64891... [more]
EMLSAP000000123227.698e-1140.63pep:novel supercontig:LSalAtl2s:LSalAtl2s8:1311290... [more]
EMLSAP000000010152.038e-940.00pep:novel supercontig:LSalAtl2s:LSalAtl2s116:78676... [more]
EMLSAP000000071175.324e-940.00pep:novel supercontig:LSalAtl2s:LSalAtl2s401:30551... [more]
EMLSAP000000054211.479e-844.44pep:novel supercontig:LSalAtl2s:LSalAtl2s292:10727... [more]
EMLSAP000000010114.082e-738.00pep:novel supercontig:LSalAtl2s:LSalAtl2s116:64409... [more]
EMLSAP000000123205.875e-755.32pep:novel supercontig:LSalAtl2s:LSalAtl2s8:1270069... [more]

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BLAST of EMLSAG00000000311 vs. SwissProt
Analysis Date: 2017-02-10 (Blastp vs. SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000000311 vs. Select Arthropod Genomes
Analysis Date: 2017-02-20 (Blastp vs. Selected Arthropods)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000000311 vs. nr
Analysis Date: 2017-02-20 (Blastp vs. NR (2/2017))
Total hits: 1
Match NameE-valueIdentityDescription
gi|155966304|gb|ABU41105.1|2.005e-2549.02hypothetical protein [Lepeophtheirus salmonis][more]
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BLAST of EMLSAG00000000311 vs. Tigriopus kingsejongenis genes
Analysis Date: 2018-04-18 (Blastp vs. Tigriopus kingsejongensis proteins)
Total hits: 4
Match NameE-valueIdentityDescription
maker-scaffold381_size190066-snap-gene-0.317.401e-1341.56protein:Tk01605 transcript:maker-scaffold381_size1... [more]
maker-scaffold82_size396747-snap-gene-2.416.157e-1139.78protein:Tk06844 transcript:maker-scaffold82_size39... [more]
maker-scaffold381_size190066-snap-gene-0.309.259e-940.26protein:Tk01607 transcript:maker-scaffold381_size1... [more]
maker-scaffold381_size190066-snap-gene-0.321.730e-736.36protein:Tk01608 transcript:maker-scaffold381_size1... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
LSalAtl2s1046supercontigLSalAtl2s1046:206967..207933 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
ensembl2013-09-26 .965016
Blast vs. GO2014-04-02
TblastN vs C. finmarchicus TSA2014-05-09
Blastp vs. self2014-05-10
Blastp vs. SwissProt2017-02-10
Blastp vs. Selected Arthropods2017-02-20
Blastp vs. NR (2/2017)2017-02-20
Blastp vs. Tigriopus kingsejongensis proteins2018-04-18
Properties
Property NameValue
Logic nameensemblgenomes
Descriptionmaker-LSalAtl2s1046-augustus-gene-1.15
Biotypeprotein_coding
EvidenceIEA
Notehypothetical protein [Lepeophtheirus salmonis]
Cross References
External references for this gene
DatabaseAccession
Ensembl Metazoa (gene)EMLSAG00000000311 (primary cross-reference)
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
EMLSAT00000000311EMLSAT00000000311-696158Lepeophtheirus salmonismRNA


Sequences
The following sequences are available for this feature:

gene from alignment at LSalAtl2s1046:206967..207933+

Legend: mRNA
Hold the cursor over a type above to highlight its positions in the sequence below.
>EMLSAG00000000311-683077 ID=EMLSAG00000000311-683077|Name=EMLSAG00000000311|organism=Lepeophtheirus salmonis|type=gene|length=967bp|location=Sequence derived from alignment at LSalAtl2s1046:206967..207933+ (Lepeophtheirus salmonis)
CTTTTTATTAACTAATTTTTCCTTTTAAGAAGATATACCGTGTCTGGAGT
AAAAAAAGTAGAAATTGAAAACGAATTATCTTGTGTTTAATCCGTTAAGG
GGTTGTGGATTAATATAAAAGTAAAAGTTATATGAAATGAGAGACTTAGA
TCATTTTTTCCCTTCTACTCGAAACAACTTCTATTTAAACCAAATCATGA
GTCTTGGAATCAAGTTTCTTCTCTTGAGTGGAGTCCTTGTTGGATTTGTT
CATGCACAAAATAAAAAACAAGCAGCAGCTGCAGCTCCAGACCCTGGAGG
AGACGACTGTAATTGCCAATGKATTTCTTTAACGTTCAGAGATTCAAGAG
GAACAATACACGGAAACTGCAAGAGGTAAGGCAACTGTATAGAGATCGGT
AGATATACGTATAATCTATCATTCTTTCTTCTTACTTTATAGTATGATCA
ATGGAGCGCAGTGGTGTTATGTCAAATATGATAGATTTAGCCCATGTCCT
GATCTTCGGGCATCCCAACGTTTCAGAGGACGTTACTGGTCCAACCATGC
CTGTGCCACTCCACCTGAAAACTCTCCTATCTGTAGTTCTGAATTACCCC
CATTTATTCCATTCTCAGCTTCCTCTTCTGCCTCTTCCGCTCCATCCAAG
AATGTCTCCGATGACGTCCTTTAATCTCATTTATCTGTTTAGTTAGTTTT
TATTGTCAAAGAACTCTGATTTTATAAGTATCATCAATAATGAATATTGA
ATGCGTTTCTTAAAAAAAGTACTTGTGATCATTAAATGTAATAAAGTGTT
TCAACATATTTTCCTTGGCTATTAATTGTATATATACATAGGTACTTCAT
TTATTCTATTGATTTAGGTTCAAAATGATGAATGTAAATGGCAAGGTGAA
TAAATACATCGGGTAGGTTACCCATCTTCAAAGTATAACTAACACTCATC
TACAAAAAGAAAAAAAA
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