EMLSAG00000000311, EMLSAG00000000311-683077 (gene) Lepeophtheirus salmonis
Overview
Associated RNAi Experiments
Nothing found Homology
BLAST of EMLSAG00000000311 vs. C. finmarchicus
Match: gi|592848676|gb|GAXK01108868.1| (TSA: Calanus finmarchicus comp296545_c0_seq1 transcribed RNA sequence) HSP 1 Score: 63.5438 bits (153), Expect = 8.280e-12 Identity = 34/64 (53.12%), Postives = 39/64 (60.94%), Query Frame = 0 Query: 58 CNCQXISLTFRDSRGTIHGNCKSMIN-GAQWCYVKYDRFSPCPDLRASQRFRGRYWSNHACATP 120 C+CQ SLTF+D G I GNC S + GA+WCYV S C DL+ S RF WS ACATP Sbjct: 536 CDCQCSSLTFQDKYGRIQGNCNSADHTGARWCYVDSAHHSSCQDLQHSARFPQNPWSYEACATP 727 HSP 2 Score: 61.2326 bits (147), Expect = 5.924e-11 Identity = 33/64 (51.56%), Postives = 37/64 (57.81%), Query Frame = 0 Query: 58 CNCQXISLTFRDSRGTIHGNCKSMIN-GAQWCYVKYDRFSPCPDLRASQRFRGRYWSNHACATP 120 C+CQ SL F+D G I GNC S + GA+WCYV S C DL S RF WS ACATP Sbjct: 139 CDCQCSSLNFQDKYGRIQGNCNSADHTGARWCYVDSAHHSSCQDLHHSVRFPNNPWSYEACATP 330
BLAST of EMLSAG00000000311 vs. C. finmarchicus
Match: gi|592932369|gb|GAXK01026184.1| (TSA: Calanus finmarchicus comp18158_c2_seq9 transcribed RNA sequence) HSP 1 Score: 62.7734 bits (151), Expect = 9.004e-12 Identity = 35/65 (53.85%), Postives = 39/65 (60.00%), Query Frame = 0 Query: 58 CNCQXISLTFRDSRGTIHGNCKSMI-NGAQWCYVKYDRFSPCPDLR-ASQRFRGRYWSNHACATP 120 C CQ +LTF+D G HGNCK + GAQWCYV R C DL S RF G+ WS ACATP Sbjct: 256 CGCQCSNLTFKDKYGNTHGNCKRVDHTGAQWCYVD-PRQGSCQDLSYTSTRFPGKPWSYEACATP 447
BLAST of EMLSAG00000000311 vs. C. finmarchicus
Match: gi|592772445|gb|GAXK01182123.1| (TSA: Calanus finmarchicus comp899023_c0_seq1 transcribed RNA sequence) HSP 1 Score: 61.2326 bits (147), Expect = 3.286e-11 Identity = 33/75 (44.00%), Postives = 41/75 (54.67%), Query Frame = 0 Query: 58 CNCQXISLTFRDSRGTIHGNCKSMIN-GAQWCYVKYDRF----SPCPDLRASQRFRGRYWSNHACATPPENSPIC 127 C CQ + D G + GNC S+ N GA WCYV+ F S C DL+ SQRF ++WS AC+TP S C Sbjct: 107 CGCQCSNYRVMDRYGELQGNCDSVDNTGAAWCYVEQGEFVKTQSTCQDLKRSQRFPAKFWSYEACSTPSIYSTQC 331
BLAST of EMLSAG00000000311 vs. C. finmarchicus
Match: gi|592855878|gb|GAXK01101666.1| (TSA: Calanus finmarchicus comp2691547_c0_seq1 transcribed RNA sequence) HSP 1 Score: 54.299 bits (129), Expect = 3.037e-9 Identity = 28/55 (50.91%), Postives = 33/55 (60.00%), Query Frame = 0 Query: 74 IHGNCKSM-INGAQWCYVKYDRFSPCPDLRASQRFRGRYWSNHACATPPENSPIC 127 IHGNC+S GA WCYV +S C DL+ S RF WS ACATP ++S C Sbjct: 223 IHGNCESADATGAFWCYVDSSHYSSCEDLQPSSRFPSNPWSYQACATPDQSSYQC 387
BLAST of EMLSAG00000000311 vs. C. finmarchicus
Match: gi|592956547|gb|GAXK01002009.1| (TSA: Calanus finmarchicus comp90527_c0_seq20 transcribed RNA sequence) HSP 1 Score: 51.9878 bits (123), Expect = 1.022e-7 Identity = 30/67 (44.78%), Postives = 37/67 (55.22%), Query Frame = 0 Query: 58 CNCQXISLTFRDSRGTIHGNCKSMING-AQWCYVKYDRFSPCPDLRASQRFRGRYWSNHACATPPEN 123 C CQ SL ++D G + GNC+S + A+WCYVK S C DL S R WS ACATP + Sbjct: 234 CGCQCSSLVWQDKYGDVQGNCRSADHTKAKWCYVK--EGSTCSDLVPSARHPRNPWSYQACATPSQG 428
BLAST of EMLSAG00000000311 vs. L. salmonis peptides
Match: EMLSAP00000002890 (pep:novel supercontig:LSalAtl2s:LSalAtl2s166:445712:450389:1 gene:EMLSAG00000002890 transcript:EMLSAT00000002890 description:"maker-LSalAtl2s166-augustus-gene-4.9") HSP 1 Score: 57.3806 bits (137), Expect = 2.440e-11 Identity = 36/97 (37.11%), Postives = 48/97 (49.48%), Query Frame = 0 Query: 25 IKFLLLSGVLVGFVHAQNKKQAAAAAPDPGGDDCNCQXISLTFRDSRGTIHGNC-KSMINGAQWCYVKYDRFSPCPDLRASQRFRGRYWSNHACATP 120 IK L+ ++ F+ N Q +P +C CQ S TF D +G GNC S G +WCYV Y + C D S R+ G+ WS AC+TP Sbjct: 2 IKIQLIKTLVCMFLSMLNLTQGQLRSPSLY-QNCGCQCNSYTFSDIKGYTQGNCFSSDFTGGRWCYVDYG--NTCHDAVPSLRYNGQ-WSYEACSTP 94
BLAST of EMLSAG00000000311 vs. L. salmonis peptides
Match: EMLSAP00000007122 (pep:novel supercontig:LSalAtl2s:LSalAtl2s401:64891:74089:-1 gene:EMLSAG00000007122 transcript:EMLSAT00000007122 description:"maker-LSalAtl2s401-augustus-gene-0.13") HSP 1 Score: 56.9954 bits (136), Expect = 4.735e-11 Identity = 43/100 (43.00%), Postives = 50/100 (50.00%), Query Frame = 0 Query: 26 KFLLLSGVLVGFVHAQNKKQAAAAAPDPGGDDCNCQXISLTFRDSRGTIHGNCKSM-INGAQWCYVKYDRFSPCPDLRASQR----FRGRYWSNHACATP 120 KFL++S V+V AQ+ AP +C CQ + FRD RG GNC S GA+WCYV DR C D R S R R R S ACATP Sbjct: 102 KFLIIS-VVVALTSAQD---ITLKAPSLA-VNCGCQCSNYIFRDLRGITQGNCNSADRTGAKWCYV--DRGHTCQDTRGSGRKDQFGRRRQISYEACATP 194 HSP 2 Score: 48.521 bits (114), Expect = 6.914e-8 Identity = 34/82 (41.46%), Postives = 41/82 (50.00%), Query Frame = 0 Query: 26 KFLLLSGVLVGFVHAQNKKQAAAAAPDPGGDDCNCQXISLTFRDSRGTIHGNCKSM-INGAQWCYVKYDRFSPCPDLRASQR 106 K L++S V+V AQ+ AP +C CQ + FRD RG GNC S GA+WCYV DR C D R S R Sbjct: 4 KILIIS-VVVALTSAQD---ITLKAPSLA-VNCGCQCSNYIFRDLRGITQGNCNSADQTGAKWCYV--DRGHTCQDTRGSGR 78
BLAST of EMLSAG00000000311 vs. L. salmonis peptides
Match: EMLSAP00000012322 (pep:novel supercontig:LSalAtl2s:LSalAtl2s8:1311290:1311781:1 gene:EMLSAG00000012322 transcript:EMLSAT00000012322 description:"augustus_masked-LSalAtl2s8-processed-gene-15.4") HSP 1 Score: 56.225 bits (134), Expect = 7.698e-11 Identity = 39/96 (40.62%), Postives = 51/96 (53.12%), Query Frame = 0 Query: 26 KFLLLSGVLVGFVHAQNKKQAAAAAPDPGGDDCNCQXISLTFRDSRGTIHGNCKSM-INGAQWCYVKYDRFSPCPDLRASQRFRGRYWSNHACATP 120 K +LLS LV +V +Q A + +C CQ S FRD G GNC+S +GA+WC+V+ + C D + FRGR SN ACATP Sbjct: 4 KIILLS-ALVAYVTSQGITLKAPSLAI----NCGCQCDSFIFRDRFGQTQGNCRSTDRSGARWCFVRPG--NTCTD---TSFFRGRTISNEACATP 89
BLAST of EMLSAG00000000311 vs. L. salmonis peptides
Match: EMLSAP00000001015 (pep:novel supercontig:LSalAtl2s:LSalAtl2s116:786764:792986:-1 gene:EMLSAG00000001015 transcript:EMLSAT00000001015 description:"maker-LSalAtl2s116-augustus-gene-8.13") HSP 1 Score: 53.1434 bits (126), Expect = 2.038e-9 Identity = 40/100 (40.00%), Postives = 48/100 (48.00%), Query Frame = 0 Query: 26 KFLLLSGVLVGFVHAQNKKQAAAAAPDPGGDDCNCQXISLTFRDSRGTIHGNCKSM-INGAQWCYVKYDRFSPCPDLRASQRF----RGRYWSNHACATP 120 K L+LS + V F AQ+ A + +C CQ + FRD G GNC S GA+WCYV +R C D R S R R R S ACATP Sbjct: 4 KILILS-IFVAFGSAQDITLKAPSLAV----NCGCQCSNYIFRDGNGITQGNCNSADRTGAKWCYV--ERGHTCQDTRRSXRRDNFGRLRQISYEACATP 96
BLAST of EMLSAG00000000311 vs. L. salmonis peptides
Match: EMLSAP00000007117 (pep:novel supercontig:LSalAtl2s:LSalAtl2s401:30551:49956:-1 gene:EMLSAG00000007117 transcript:EMLSAT00000007117 description:"maker-LSalAtl2s401-augustus-gene-0.12") HSP 1 Score: 51.9878 bits (123), Expect = 5.324e-9 Identity = 40/100 (40.00%), Postives = 48/100 (48.00%), Query Frame = 0 Query: 26 KFLLLSGVLVGFVHAQNKKQAAAAAPDPGGDDCNCQXISLTFRDSRGTIHGNCKSM-INGAQWCYVKYDRFSPCPDLRASQR----FRGRYWSNHACATP 120 K L++S V+V AQ+ A + +C CQ + FRD RG GNC S GA+WCYV DR C D S R R R S ACATP Sbjct: 59 KILIIS-VVVALTSAQDITLKAPSLAV----NCGCQCSNYIFRDLRGITQGNCNSADQTGAKWCYV--DRGHTCQDTIGSARNDQFGRRRQISYEACATP 151
BLAST of EMLSAG00000000311 vs. L. salmonis peptides
Match: EMLSAP00000005421 (pep:novel supercontig:LSalAtl2s:LSalAtl2s292:107272:109821:1 gene:EMLSAG00000005421 transcript:EMLSAT00000005421 description:"maker-LSalAtl2s292-snap-gene-1.3") HSP 1 Score: 48.9062 bits (115), Expect = 1.479e-8 Identity = 20/45 (44.44%), Postives = 28/45 (62.22%), Query Frame = 0 Query: 85 AQWCYVKYDRFSPCPDLRASQRFRGRYWSNHACATPPENSPICSS 129 ++CYV D SPC DL+ S +F G+Y S HAC TP ++ +C Sbjct: 39 GKFCYVVGDSKSPCVDLKPSTQFMGKYISKHACLTPHLDTFLCKK 83
BLAST of EMLSAG00000000311 vs. L. salmonis peptides
Match: EMLSAP00000001011 (pep:novel supercontig:LSalAtl2s:LSalAtl2s116:644091:644652:-1 gene:EMLSAG00000001011 transcript:EMLSAT00000001011 description:"maker-LSalAtl2s116-augustus-gene-6.17") HSP 1 Score: 45.8246 bits (107), Expect = 4.082e-7 Identity = 38/100 (38.00%), Postives = 47/100 (47.00%), Query Frame = 0 Query: 26 KFLLLSGVLVGFVHAQNKKQAAAAAPDPGGDDCNCQXISLTFRDSRGTIHGNCKSM-INGAQWCYVKYDRFSPCPDLRASQRF----RGRYWSNHACATP 120 K L+LS + V F AQ+ A + +C CQ + FRD G GNC S GA++CYV+ D R S R R R SN ACATP Sbjct: 4 KILILS-IFVAFGSAQDITLKAPSLAV----NCGCQCSNYIFRDGNGITQGNCNSADRTGAKFCYVEPG--XTXQDTRRSGRRDXFGRFRQISNEACATP 96
BLAST of EMLSAG00000000311 vs. L. salmonis peptides
Match: EMLSAP00000012320 (pep:novel supercontig:LSalAtl2s:LSalAtl2s8:1270069:1270443:1 gene:EMLSAG00000012320 transcript:EMLSAT00000012320 description:"augustus_masked-LSalAtl2s8-processed-gene-15.6") HSP 1 Score: 44.669 bits (104), Expect = 5.875e-7 Identity = 26/47 (55.32%), Postives = 28/47 (59.57%), Query Frame = 0 Query: 75 HGNCKSM-INGAQWCYVKYDRFSPCPDLRASQRFRGRYWSNHACATP 120 GNC+S GA+WCYV S C DLR SQR RY S ACATP Sbjct: 7 QGNCRSSDYTGARWCYVNVG--SSCNDLRQSQRGGYRYISYEACATP 51
BLAST of EMLSAG00000000311 vs. nr
Match: gi|155966304|gb|ABU41105.1| (hypothetical protein [Lepeophtheirus salmonis]) HSP 1 Score: 103.219 bits (256), Expect = 2.005e-25 Identity = 50/102 (49.02%), Postives = 63/102 (61.76%), Query Frame = 0 Query: 30 LSGVLVGFVHAQ----NKKQAAAAAPDPGGDDCNCQXISLTFRDSRGTIHGNCKSMINGAQWCYVKYDRFSPCPDLRASQRFRGRYWSNHACATPPENSPIC 127 + G+ +G V A + Q A AP DC CQ I+L+F D G GNC+S NGAQWCYV+ D +S CPDL+ S R+RG+Y+SNHAC T P SP C Sbjct: 1 MRGIYIGIVLATCVYWSNAQQFAPAPINSQADCQCQCIALSFYDEYGQQQGNCRSTFNGAQWCYVENDGYSSCPDLKRSTRYRGKYYSNHACITLPAYSPEC 102
BLAST of EMLSAG00000000311 vs. Tigriopus kingsejongenis genes
Match: maker-scaffold381_size190066-snap-gene-0.31 (protein:Tk01605 transcript:maker-scaffold381_size190066-snap-gene-0.31-mRNA-1 annotation:"hypothetical protein") HSP 1 Score: 62.3882 bits (150), Expect = 7.401e-13 Identity = 32/77 (41.56%), Postives = 42/77 (54.55%), Query Frame = 0 Query: 57 DCNCQXISLTFRDSRGTIHGNCKSM-INGAQWCYVKYDRFSPCPDLRASQRF-----RGRYWSNHACATPPENSPIC 127 +C CQ T+RD+ G + GNC+S A WCY+ F+ C D+R S+ R R WS AC+TP SPIC Sbjct: 47 NCGCQCDPYTWRDTLGRVQGNCRSADATKALWCYIPASAFTSCADIRQSRNRLDNFGRPRRWSYEACSTPALTSPIC 123
BLAST of EMLSAG00000000311 vs. Tigriopus kingsejongenis genes
Match: maker-scaffold82_size396747-snap-gene-2.41 (protein:Tk06844 transcript:maker-scaffold82_size396747-snap-gene-2.41-mRNA-1 annotation:"hypothetical protein") HSP 1 Score: 58.151 bits (139), Expect = 6.157e-11 Identity = 37/93 (39.78%), Postives = 45/93 (48.39%), Query Frame = 0 Query: 29 LLSGVLVGFVHAQNKKQA-AAAAPDPGGDDCNCQXISLTFRDSRGTIHGNCKSMINGAQWCYVKYDRFSPCPDLRASQRFRGRYWSNHACATP 120 L V+VG K + A A + D C+CQ + TF+ T+HGNC GA WCYVK S C D S R G +WS AC TP Sbjct: 219 FLGEVVVGRCAILVKNASLAKAQSEITQDVCDCQCNNYTFK-FDNTLHGNCLQPYKGALWCYVKDFGQSTCIDRLESSRVSGLFWSFQACGTP 310
BLAST of EMLSAG00000000311 vs. Tigriopus kingsejongenis genes
Match: maker-scaffold381_size190066-snap-gene-0.30 (protein:Tk01607 transcript:maker-scaffold381_size190066-snap-gene-0.30-mRNA-1 annotation:"hypothetical protein AN3340.2") HSP 1 Score: 51.2174 bits (121), Expect = 9.259e-9 Identity = 31/77 (40.26%), Postives = 41/77 (53.25%), Query Frame = 0 Query: 58 CNCQXISLTFRDSRGTIHGNCKSM-INGAQWCYVKYDRFS-PCPDLRASQRFRG-----RYWSNHACATPPENSPIC 127 CNCQ + T++ IHGNC S A+WCYV D++S C D++ S+ R R WS AC+TP S C Sbjct: 45 CNCQCDNYTYKGGDNQIHGNCFSADQTKAKWCYV--DQYSGECDDIQYSKNRRDSHGNLRKWSYQACSTPERASHQC 119
BLAST of EMLSAG00000000311 vs. Tigriopus kingsejongenis genes
Match: maker-scaffold381_size190066-snap-gene-0.32 (protein:Tk01608 transcript:maker-scaffold381_size190066-snap-gene-0.32-mRNA-1 annotation:"---NA---") HSP 1 Score: 47.7506 bits (112), Expect = 1.730e-7 Identity = 28/77 (36.36%), Postives = 42/77 (54.55%), Query Frame = 0 Query: 58 CNCQXISLTFRDSRGTIHGNCKSMING-AQWCYVKYDRF-SPCPDLRASQRFRG-----RYWSNHACATPPENSPIC 127 CNCQ + T++ IHGNC + + +WCY+ D++ + C D++ S+ R R WS AC+TP SP C Sbjct: 47 CNCQCDNYTYKGDDNQIHGNCFTADHTRGKWCYL--DQYNNDCDDIQYSKNRRDSFGNLREWSYQACSTPQLGSPQC 121 The following BLAST results are available for this feature:
BLAST of EMLSAG00000000311 vs. GO
Analysis Date: 2014-04-02 (Blast vs. GO) Total hits: 0
BLAST of EMLSAG00000000311 vs. C. finmarchicus
Analysis Date: 2014-05-09 (TblastN vs C. finmarchicus TSA) Total hits: 25
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BLAST of EMLSAG00000000311 vs. L. salmonis peptides
Analysis Date: 2014-05-10 (Blastp vs. self) Total hits: 18
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BLAST of EMLSAG00000000311 vs. SwissProt
Analysis Date: 2017-02-10 (Blastp vs. SwissProt) Total hits: 0
BLAST of EMLSAG00000000311 vs. Select Arthropod Genomes
Analysis Date: 2017-02-20 (Blastp vs. Selected Arthropods) Total hits: 0
BLAST of EMLSAG00000000311 vs. nr
Analysis Date: 2017-02-20 (Blastp vs. NR (2/2017)) Total hits: 1
BLAST of EMLSAG00000000311 vs. Tigriopus kingsejongenis genes
Analysis Date: 2018-04-18 (Blastp vs. Tigriopus kingsejongensis proteins) Total hits: 4
Alignments
The following features are aligned
Analyses
This gene is derived from or has results from the following analyses
Properties
Cross References
External references for this gene
Relationships
The following mRNA feature(s) are a part of this gene:
Sequences
The following sequences are available for this feature:
gene from alignment at LSalAtl2s1046:206967..207933+ Legend: mRNA Hold the cursor over a type above to highlight its positions in the sequence below.>EMLSAG00000000311-683077 ID=EMLSAG00000000311-683077|Name=EMLSAG00000000311|organism=Lepeophtheirus salmonis|type=gene|length=967bp|location=Sequence derived from alignment at LSalAtl2s1046:206967..207933+ (Lepeophtheirus salmonis)back to top Add to Basket
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