EMLSAG00000000496, EMLSAG00000000496-683262 (gene) Lepeophtheirus salmonis
Overview
Associated RNAi Experiments
Homology
BLAST of EMLSAG00000000496 vs. C. finmarchicus
Match: gi|592804089|gb|GAXK01150479.1| (TSA: Calanus finmarchicus comp155677_c0_seq1 transcribed RNA sequence) HSP 1 Score: 229.18 bits (583), Expect = 3.664e-66 Identity = 162/549 (29.51%), Postives = 249/549 (45.36%), Query Frame = 0 Query: 1 MFFYRPWVRTPSDDVIFNKQINNLGIYNFYRRSWGYGVLLGLTMIGSLILNSSFLMSFWTWPNQRKHAPSIVLLMFTIRDLFVTIFLIPTAIAWLVFGEGKWISGSEWCTISGFLDFFLAAEYPFLILCLCIVLITRKLTKYYDDFFDPALDEEDDHRKVDEYIQSIXXXXXXXXXXXXXXXXXXXRAPSVINQPIHGKYAS-SPPSIAYSDTSRGKRRLTPGGGFHHSNKAASISGGSVQRGANYLKPPL---------------HNFRASSPL----KEEIASVD--LWEEASLGYPGRQCPSIRTREMVDMDDEDELGPPTFHQWHYFLTGTTWIIALSFGISAAFYMKYFQNKRTXTCMLFANPF-----SNPNVMMDPGFNYLFSNVILTYLVPMGVFLILLVFMYLQR-TKNSKFQRYIKLTLAIFLVFVISRTPMDKLQLEGLIEAYNGTKLLTILPYEIEHEILVIWAMFIPTLLHPIIFLGFISEYREGASIGWKIIVGCYHVKKQPKRANMMNQMDRIEEEEPVKNDNDESMTKESEFL 521 +FFYR W I G FY R WGY LLG+TM+ +++N+ +L+ +W P P + L+ IRDL V +F++P AI WLV G W G+ WCT + F D++L YP L++ LC++L TRKL P+ E H SR P H + S PS+A S S R GF A GGS QRG + + H R+SSPL +E+ S+D LWE AS+ YPG+ + E VD DD + P +W ++ W++ L G AA + + + C L + N ++ DP N L ++V + Y+VP + ++ + + R T++ K R+ K+ +A+ ++FV +R+P+D LQ +I GT + P ++EHEIL++WA +P + +PII+L ++EYR+ + WK G PK + ++ I ++ V TK+SE L Sbjct: 146 LFFYRAWAGVDHRGPGAVSSILRPGDPLFYTR-WGYAALLGVTMLAGIVMNTVYLLGYWVCPRAMLEVPHVALVSLAIRDLLVCLFVMPAAIDWLVAGLTSWSGGAGWCTTAVFFDYYLNTVYPLLVIMLCVILYTRKLPPK-----PPSSRESVRHHG-------------------------SSRMSHRSGYPHHNQTPSVRAPSVAASVQSNRSSRHE---GFRKGFSKAPSVGGS-QRGPGSVSGSISGHHMSSRQSQYQQQHGPRSSSPLGLVHEEDAGSIDGELWELASMEYPGKNDLDLEF-EDVDGDDNE----PRLREWLKYVIHLVWLVGLGIGAPAAMLAQ--ADPKPPGCYLAQDTILIAKSRNSYILQDPTMNLLIASVAVNYIVPSVLMIMASILLCTTRWTQDGKLNRFYKMCIALCVLFVATRSPIDILQFTEIINTSQGTTITNRRPDQLEHEILLVWAALVPVVGNPIIYLFCVTEYRQNIAKMWKSCTG-------PKEVSEDDEFHDIPDDRSVITS-----TKQSEVL 1630
BLAST of EMLSAG00000000496 vs. C. finmarchicus
Match: gi|592804088|gb|GAXK01150480.1| (TSA: Calanus finmarchicus comp155677_c0_seq2 transcribed RNA sequence) HSP 1 Score: 139.813 bits (351), Expect = 8.297e-36 Identity = 107/352 (30.40%), Postives = 149/352 (42.33%), Query Frame = 0 Query: 1 MFFYRPWVRTPSDDVIFNKQINNLGIYNFYRRSWGYGVLLGLTMIGSLILNSSFLMSFWTWPNQRKHAPSIVLLMFTIRDLFVTIFLIPTAIAWLVFGEGKWISGSEWCTISGFLDFFLAAEYPFLILCLCIVLITRKLTKYYDDFFDPALDEEDDHRKVDEYIQSIXXXXXXXXXXXXXXXXXXXRAPSVINQPIHGKYAS-SPPSIAYSDTSRGKRRLTPGGGFHHSNKAASISGGSVQRGANYLKPPL---------------HNFRASSPL----KEEIASVD--LWEEASLGYPGRQCPSIRTREMVDMDDEDELGPPTFHQWHYFLTGTTWIIALSFGISAAFYMK 330 +FFYR W I G FY R WGY LLG+TM+ +++N+ +L+ +W P P + L+ IRDL V +F++P AI WLV G W G+ WCT + F D++L YP L++ LC++L TRKL P+ E H SR P H + S PS+A S S R GF A GGS QRG + + H R+SSPL +E+ S+D LWE AS+ YPG+ + E VD DD + P +W ++ W++ L G AA + Sbjct: 146 LFFYRAWAGVDHRGPGAVSSILRPGDPLFYTR-WGYAALLGVTMLAGIVMNTVYLLGYWVCPRAMLEVPHVALVSLAIRDLLVCLFVMPAAIDWLVAGLTSWSGGAGWCTTAVFFDYYLNTVYPLLVIMLCVILYTRKLPPK-----PPSSRESVRHHG-------------------------SSRMSHRSGYPHHNQTPSVRAPSVAASVQSNRSSRHE---GFRKGFSKAPSVGGS-QRGPGSVSGSISGHHMSSRQSQYQQQHGPRSSSPLGLVHEEDAGSIDGELWELASMEYPGKNDLDLEF-EDVDGDDNE----PRLREWLKYVIHLVWLVGLGIGAPAAMLAQ 1081
BLAST of EMLSAG00000000496 vs. C. finmarchicus
Match: gi|592768376|gb|GAXK01186192.1| (TSA: Calanus finmarchicus comp44117_c1_seq1 transcribed RNA sequence) HSP 1 Score: 57.3806 bits (137), Expect = 8.752e-8 Identity = 40/179 (22.35%), Postives = 87/179 (48.60%), Query Frame = 0 Query: 355 DPGFNYLFSNVILTYLVPMGVFLILLVFMYLQ-------RTKNSKFQRYIKLTLAIFLVFVISRTPMDKLQLEGLIEAYNGTKLL---TILPYEIEHEILVIWAMFIPTLLHPIIFLGFISEYREGASIGWKIIVGCYHVKKQP--KRANMMNQMDRIEE--EEPVKNDNDESMTKESE 519 DP + ++ + T+++P+ + +I + +Q R ++S F + +T+ + L+F SR P + ++ ++ + LL ILP + ++ WA++ P ++HPI++ F ++ R G I + + C + K + A++ + I + E V++D M E+E Sbjct: 1357 DPSIYFYLASFLFTFVLPLVLLVIPWFALLVQSAGCCTRRLRSSDFWLSL-ITIFLILIFEASRAPFELFNIQYVLTNWTAGTLLPIPEILPLGESYVAVMKWAVYAPAMVHPILYFTFSADARHGVRILFGRLCACCYSKSGDDIESASVKPNTNGINQTHETVVEDDEKNKMLPEAE 1890
BLAST of EMLSAG00000000496 vs. C. finmarchicus
Match: gi|592768375|gb|GAXK01186193.1| (TSA: Calanus finmarchicus comp44117_c1_seq2 transcribed RNA sequence) HSP 1 Score: 55.8398 bits (133), Expect = 3.335e-7 Identity = 38/175 (21.71%), Postives = 80/175 (45.71%), Query Frame = 0 Query: 355 DPGFNYLFSNVILTYLVPMGVFLILLVFMYLQ-------RTKNSKFQRYIKLTLAIFLVFVISRTPMDKLQLEGLIEAYNGTKLL---TILPYEIEHEILVIWAMFIPTLLHPIIFLGFISEYREGASIGWKIIVGCYHVKKQPKRANMMNQMDRIEEEEPVKNDNDESMTKESE 519 DP + ++ + T+++P+ + +I + +Q R ++S F + +T+ + L+F SR P + ++ ++ + LL ILP + ++ WA++ P ++HPI++ F ++ R G I + + C + K E+ E +D M E+E Sbjct: 1357 DPSIYFYLASFLFTFVLPLVLLVIPWFALLVQSAGCCTRRLRSSDFWLSL-ITIFLILIFEASRAPFELFNIQYVLTNWTAGTLLPIPEILPLGESYVAVMKWAVYAPAMVHPILYFTFSADARHGVRILFGRLCACCYSKSG-------------EDIESASDDEKNKMLPEAE 1839
BLAST of EMLSAG00000000496 vs. C. finmarchicus
Match: gi|592753069|gb|GAXK01201344.1| (TSA: Calanus finmarchicus comp144347_c1_seq1 transcribed RNA sequence) HSP 1 Score: 48.9062 bits (115), Expect = 3.808e-5 Identity = 50/227 (22.03%), Postives = 95/227 (41.85%), Query Frame = 0 Query: 304 HQWHYFLTGTTWIIALSFGISAAFYMKYFQNKRTXTCMLFANPFSNPNVMMDPG------FNYLFSNVILTYLVPMGVFLILLVFMYLQRTKNSKFQ----RYIKLTLAIFLVFVISRTPMDKLQLEGLIEAYNGTKLLTI---LP-YEIEHEILVIWAMFIPTLLHPIIFLGFISEYREGASIGWKIIVGCYHVKKQPKRANMMNQMDRIEEEEPVKNDNDESMTK 516 H+W L W++ L + A + C +F +N D G +L IL +L+ M F +L +FM + ++ + R + + L+F+ SR P D +L + NG + T+ +P +E ++ + ++IP ++HPI+F+ EYR+G W+ Y K Q +R + + + + P+ N ++ Sbjct: 1901 HKWAIPLA---WVVGLGIAVPAG----AMATMKCGQCSVFHFGLTN-----DSGSEFYINLAFLIVAFILPWLIMM--FPLLALFMQICGARSPRLDPPHSRTAMIMVLFILLFIASRAPHDIYELMKMFAMKNGIRGDTLNRGMPAMSMETKMTLNCLVYIPCMIHPILFILINGEYRQGFRDMWR---NLYCNKNQSQRD--IQKQQKYKNPPPIVRQNPRGGSR 2524
BLAST of EMLSAG00000000496 vs. C. finmarchicus
Match: gi|592898773|gb|GAXK01059602.1| (TSA: Calanus finmarchicus comp2395384_c0_seq1 transcribed RNA sequence) HSP 1 Score: 38.1206 bits (87), Expect = 6.727e-2 Identity = 27/94 (28.72%), Postives = 46/94 (48.94%), Query Frame = 0 Query: 39 LLGLTMIGSLILNSSFLMSFWTWPNQRKHAPSIVLLMFTIRDLFVTIFLIPTAIAWLVFGEGKWISGSEWCTISGFLDFFLAAEYPFLILCLCI 132 L+ + ++G+ ++ +S L R+ S ++ I DLFV +F++P +A +V +G W G WC LDF L F +L + I Sbjct: 711 LIAVAVVGNGLVVASVLSR----KKTREKKNSRFIVSNAISDLFVGLFVMPFGMAQVV--QGSWAFGKTWCQQWVMLDFTLCQASVFNMLSINI 974
BLAST of EMLSAG00000000496 vs. C. finmarchicus
Match: gi|592828354|gb|GAXK01128796.1| (TSA: Calanus finmarchicus comp642611_c2_seq1 transcribed RNA sequence) HSP 1 Score: 33.4982 bits (75), Expect = 9.340e-1 Identity = 20/67 (29.85%), Postives = 37/67 (55.22%), Query Frame = 0 Query: 80 DLFVTIFLIPTAIAWLVFGEGKWISGSEWCTISGFLDFFLAAEYPFLILCLCIVLITR--KLTKYYD 144 DL + + ++P ++A+ + G W+ GS WC I G LD L+ I+ +C++ + R +T+ D Sbjct: 30 DLSLGLIIMPFSLAYELLG--YWMFGSLWCDIHGALDVLLSTSS---IMNICLISLDRYWSITRALD 215
BLAST of EMLSAG00000000496 vs. C. finmarchicus
Match: gi|592828329|gb|GAXK01128810.1| (TSA: Calanus finmarchicus comp642611_c2_seq15 transcribed RNA sequence) HSP 1 Score: 31.187 bits (69), Expect = 2.463e+0 Identity = 20/67 (29.85%), Postives = 37/67 (55.22%), Query Frame = 0 Query: 80 DLFVTIFLIPTAIAWLVFGEGKWISGSEWCTISGFLDFFLAAEYPFLILCLCIVLITR--KLTKYYD 144 DL + + ++P ++A+ + G W+ GS WC I G LD L+ I+ +C++ + R +T+ D Sbjct: 30 DLSLGLIIMPFSLAYELLG--YWMFGSLWCDIHGALDVLLSTSS---IMNICLISLDRYWSITRALD 215
BLAST of EMLSAG00000000496 vs. C. finmarchicus
Match: gi|592790121|gb|GAXK01164447.1| (TSA: Calanus finmarchicus comp5881552_c0_seq1 transcribed RNA sequence) HSP 1 Score: 31.187 bits (69), Expect = 7.051e+0 Identity = 18/62 (29.03%), Postives = 30/62 (48.39%), Query Frame = 0 Query: 76 FTIRDLFVTIFLIPTAIAWLVFGEGKWISGSEWCTISGFLDFFLAAEYPFLILCLCIVLITR 137 + D+ V ++P ++ V G+W+ G WC + LD FL IL LC++ + R Sbjct: 238 LAMADILVGAVVVPFSLMQEV--TGQWVFGFYWCQVHSALDVFLCTAS---ILNLCLISLDR 408
BLAST of EMLSAG00000000496 vs. C. finmarchicus
Match: gi|592801979|gb|GAXK01152589.1| (TSA: Calanus finmarchicus comp1825834_c0_seq1 transcribed RNA sequence) HSP 1 Score: 31.5722 bits (70), Expect = 7.997e+0 Identity = 21/67 (31.34%), Postives = 32/67 (47.76%), Query Frame = 0 Query: 397 IKLTLAIFLVFVISRTPMDKLQLEGLIEAYNGTKLLTILPYEIEHEILVIWAMFIPTLLHPIIFLGF 463 I++ IFL IS+ P LQL L Y G + ++L + H ++ + +P L P IF F Sbjct: 1308 IQVLKVIFLRRSISKVPYPSLQLAILPAGYPGHSVASLL-HSPHHSLVYVRNPHVPHLARPFIFWRF 1505
BLAST of EMLSAG00000000496 vs. L. salmonis peptides
Match: EMLSAP00000000496 (pep:novel supercontig:LSalAtl2s:LSalAtl2s1078:162753:165695:1 gene:EMLSAG00000000496 transcript:EMLSAT00000000496 description:"maker-LSalAtl2s1078-augustus-gene-1.10") HSP 1 Score: 1077.39 bits (2785), Expect = 0.000e+0 Identity = 521/521 (100.00%), Postives = 521/521 (100.00%), Query Frame = 0 Query: 1 MFFYRPWVRTPSDDVIFNKQINNLGIYNFYRRSWGYGVLLGLTMIGSLILNSSFLMSFWTWPNQRKHAPSIVLLMFTIRDLFVTIFLIPTAIAWLVFGEGKWISGSEWCTISGFLDFFLAAEYPFLILCLCIVLITRKLTKYYDDFFDPALDEEDDHRKVDEYIQSIPTLSVPGVTVVGVGSPNGSRAPSVINQPIHGKYASSPPSIAYSDTSRGKRRLTPGGGFHHSNKAASISGGSVQRGANYLKPPLHNFRASSPLKEEIASVDLWEEASLGYPGRQCPSIRTREMVDMDDEDELGPPTFHQWHYFLTGTTWIIALSFGISAAFYMKYFQNKRTXTCMLFANPFSNPNVMMDPGFNYLFSNVILTYLVPMGVFLILLVFMYLQRTKNSKFQRYIKLTLAIFLVFVISRTPMDKLQLEGLIEAYNGTKLLTILPYEIEHEILVIWAMFIPTLLHPIIFLGFISEYREGASIGWKIIVGCYHVKKQPKRANMMNQMDRIEEEEPVKNDNDESMTKESEFL 521 MFFYRPWVRTPSDDVIFNKQINNLGIYNFYRRSWGYGVLLGLTMIGSLILNSSFLMSFWTWPNQRKHAPSIVLLMFTIRDLFVTIFLIPTAIAWLVFGEGKWISGSEWCTISGFLDFFLAAEYPFLILCLCIVLITRKLTKYYDDFFDPALDEEDDHRKVDEYIQSIPTLSVPGVTVVGVGSPNGSRAPSVINQPIHGKYASSPPSIAYSDTSRGKRRLTPGGGFHHSNKAASISGGSVQRGANYLKPPLHNFRASSPLKEEIASVDLWEEASLGYPGRQCPSIRTREMVDMDDEDELGPPTFHQWHYFLTGTTWIIALSFGISAAFYMKYFQNKRTXTCMLFANPFSNPNVMMDPGFNYLFSNVILTYLVPMGVFLILLVFMYLQRTKNSKFQRYIKLTLAIFLVFVISRTPMDKLQLEGLIEAYNGTKLLTILPYEIEHEILVIWAMFIPTLLHPIIFLGFISEYREGASIGWKIIVGCYHVKKQPKRANMMNQMDRIEEEEPVKNDNDESMTKESEFL Sbjct: 1 MFFYRPWVRTPSDDVIFNKQINNLGIYNFYRRSWGYGVLLGLTMIGSLILNSSFLMSFWTWPNQRKHAPSIVLLMFTIRDLFVTIFLIPTAIAWLVFGEGKWISGSEWCTISGFLDFFLAAEYPFLILCLCIVLITRKLTKYYDDFFDPALDEEDDHRKVDEYIQSIPTLSVPGVTVVGVGSPNGSRAPSVINQPIHGKYASSPPSIAYSDTSRGKRRLTPGGGFHHSNKAASISGGSVQRGANYLKPPLHNFRASSPLKEEIASVDLWEEASLGYPGRQCPSIRTREMVDMDDEDELGPPTFHQWHYFLTGTTWIIALSFGISAAFYMKYFQNKRTXTCMLFANPFSNPNVMMDPGFNYLFSNVILTYLVPMGVFLILLVFMYLQRTKNSKFQRYIKLTLAIFLVFVISRTPMDKLQLEGLIEAYNGTKLLTILPYEIEHEILVIWAMFIPTLLHPIIFLGFISEYREGASIGWKIIVGCYHVKKQPKRANMMNQMDRIEEEEPVKNDNDESMTKESEFL 521 The following BLAST results are available for this feature:
BLAST of EMLSAG00000000496 vs. GO
Analysis Date: 2014-04-02 (Blast vs. GO) Total hits: 0
BLAST of EMLSAG00000000496 vs. C. finmarchicus
Analysis Date: 2014-05-09 (TblastN vs C. finmarchicus TSA) Total hits: 10
BLAST of EMLSAG00000000496 vs. L. salmonis peptides
Analysis Date: 2014-05-10 (Blastp vs. self) Total hits: 1
BLAST of EMLSAG00000000496 vs. SwissProt
Analysis Date: 2017-02-10 (Blastp vs. SwissProt) Total hits: 0
BLAST of EMLSAG00000000496 vs. Select Arthropod Genomes
Analysis Date: 2017-02-20 (Blastp vs. Selected Arthropods) Total hits: 0
BLAST of EMLSAG00000000496 vs. nr
Analysis Date: 2017-02-20 (Blastp vs. NR (2/2017)) Total hits: 0
BLAST of EMLSAG00000000496 vs. Tigriopus kingsejongenis genes
Analysis Date: 2018-04-18 (Blastp vs. Tigriopus kingsejongensis proteins) Total hits: 0
Alignments
The following features are aligned
Analyses
This gene is derived from or has results from the following analyses
Properties
Cross References
External references for this gene
Relationships
The following mRNA feature(s) are a part of this gene:
Sequences
The following sequences are available for this feature:
gene from alignment at LSalAtl2s1078:162753..165695+ Legend: mRNA Hold the cursor over a type above to highlight its positions in the sequence below.>EMLSAG00000000496-683262 ID=EMLSAG00000000496-683262|Name=EMLSAG00000000496|organism=Lepeophtheirus salmonis|type=gene|length=2943bp|location=Sequence derived from alignment at LSalAtl2s1078:162753..165695+ (Lepeophtheirus salmonis)back to top Add to Basket
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