EMLSAG00000000582, EMLSAG00000000582-683348 (gene) Lepeophtheirus salmonis

Overview
NameEMLSAG00000000582
Unique NameEMLSAG00000000582-683348
Typegene
OrganismLepeophtheirus salmonis (salmon louse)
Associated RNAi Experiments

Nothing found

Homology
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BLAST of EMLSAG00000000582 vs. C. finmarchicus
Match: gi|592912074|gb|GAXK01046301.1| (TSA: Calanus finmarchicus comp581353_c0_seq1 transcribed RNA sequence)

HSP 1 Score: 30.4166 bits (67), Expect = 2.683e+0
Identity = 21/67 (31.34%), Postives = 29/67 (43.28%), Query Frame = 0 
Query:    7 IALVQTFLLVVDYCSADTYESPFQGKWCEYCSTRDQVQEFMTKLEFPRETTATY--VNANPVNLTIH 71
            I L+  FL+ +D  +  TY+S FQ KW                L  P+   A++  VN    NL IH
Sbjct: 2947 IPLLVLFLISIDCFTGSTYDSTFQSKW----------------LLVPKAGGASFELVNTGTRNLRIH 3099
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BLAST of EMLSAG00000000582 vs. L. salmonis peptides
Match: EMLSAP00000000582 (pep:novel supercontig:LSalAtl2s:LSalAtl2s1099:41129:41757:-1 gene:EMLSAG00000000582 transcript:EMLSAT00000000582 description:"maker-LSalAtl2s1099-snap-gene-0.11")

HSP 1 Score: 316.62 bits (810), Expect = 1.130e-111
Identity = 150/150 (100.00%), Postives = 150/150 (100.00%), Query Frame = 0 
Query:    1 MKLIKYIALVQTFLLVVDYCSADTYESPFQGKWCEYCSTRDQVQEFMTKLEFPRETTATYVNANPVNLTIHYNQTNQMHVIYGQDPTGVDFQLNFPWKANRFFTRADFFGKHAYFKSAHYENELFMNFYPDQLGVTLYFKFEFTVDEKDT 150
            MKLIKYIALVQTFLLVVDYCSADTYESPFQGKWCEYCSTRDQVQEFMTKLEFPRETTATYVNANPVNLTIHYNQTNQMHVIYGQDPTGVDFQLNFPWKANRFFTRADFFGKHAYFKSAHYENELFMNFYPDQLGVTLYFKFEFTVDEKDT
Sbjct:    1 MKLIKYIALVQTFLLVVDYCSADTYESPFQGKWCEYCSTRDQVQEFMTKLEFPRETTATYVNANPVNLTIHYNQTNQMHVIYGQDPTGVDFQLNFPWKANRFFTRADFFGKHAYFKSAHYENELFMNFYPDQLGVTLYFKFEFTVDEKDT 150
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BLAST of EMLSAG00000000582 vs. L. salmonis peptides
Match: EMLSAP00000011118 (pep:novel supercontig:LSalAtl2s:LSalAtl2s7539:315:1161:-1 gene:EMLSAG00000011118 transcript:EMLSAT00000011118 description:"maker-LSalAtl2s7539-augustus-gene-0.0")

HSP 1 Score: 72.0182 bits (175), Expect = 8.553e-17
Identity = 35/85 (41.18%), Postives = 45/85 (52.94%), Query Frame = 0 
Query:    1 MKLIKYIALVQTFLLVVDYCSADTYESPFQGKWCEYCSTRDQVQEFMTKLEFPRETTATYVNANPVNLTIHYNQTNQMHVIYGQD 85
            MKLI YIA VQ  +LVVD+CSA  +   F G WCE  ++R +V + M  L    E    Y   NP+ L I YN     ++  G D
Sbjct:    1 MKLIHYIAFVQILVLVVDFCSATXFPXKFVGNWCEDKASRSKVSDVMRXLGLSDELIKKYEEGNPMKLDIVYNPXKNDYIFNGTD 85
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BLAST of EMLSAG00000000582 vs. L. salmonis peptides
Match: EMLSAP00000007695 (pep:novel supercontig:LSalAtl2s:LSalAtl2s4487:6203:6885:-1 gene:EMLSAG00000007695 transcript:EMLSAT00000007695 description:"maker-LSalAtl2s4487-augustus-gene-0.1")

HSP 1 Score: 63.929 bits (154), Expect = 1.623e-13
Identity = 46/134 (34.33%), Postives = 64/134 (47.76%), Query Frame = 0 
Query:    1 MKLIKYIALVQTFLLVVDYCSADTYESPFQGKWCEYCSTRDQVQEFMTKLEFPRETTATYVNANPVNLTIHYNQTNQMHVIYGQDPTGVDFQLNFPWKANRFFTRA-DFFGKHAYFKSAHYENE-LFMNFYPDQ 132
            MKL+  I L+Q   LV+++CSA    S F+G W E   +R   QE MT+L    +    Y+      L I Y  T   + I G DP    F   F  + N+    A D FGK  Y+  ++Y N+ L M  Y +Q
Sbjct:    1 MKLLNCIVLIQIIFLVLEFCSAQNV-SSFEGTWSENEGSRVNFQEVMTELGISEDVIKVYIQGILATLNIFYTPTAFTYXITGNDPRSKTF--GFLIRKNQEQLEAVDIFGK-TYWSLSNYTNKTLQMFIYKEQ 130
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BLAST of EMLSAG00000000582 vs. L. salmonis peptides
Match: EMLSAP00000008241 (pep:novel supercontig:LSalAtl2s:LSalAtl2s4989:1444:2126:-1 gene:EMLSAG00000008241 transcript:EMLSAT00000008241 description:"maker-LSalAtl2s4989-augustus-gene-0.2")

HSP 1 Score: 63.5438 bits (153), Expect = 1.927e-13
Identity = 43/129 (33.33%), Postives = 59/129 (45.74%), Query Frame = 0 
Query:    1 MKLIKYIALVQTFLLVVDYCSADTYESPFQGKWCEYCSTRDQVQEFMTKLEFPRETTATYVNANPVNLTIHYNQTNQMHVIYGQDPTGVDFQLNFPWKANRF-FTRADFFGKHAYFKSAHYENELFMNF 128
            MKL+  I L+Q   LVV++CSA    S F+G W E   +R   QE MT+L    +    Y+      L I Y  T   + I G DP    F   F  + N+      D FGK  Y+  ++Y N+    F
Sbjct:    1 MKLLNCIVLIQIIFLVVEFCSAQNV-SSFEGTWSENEGSRVNFQEVMTELGISEDVIKVYIQGILATLNIFYTPTAFTYAITGNDPRSKTF--GFLIRKNQEQLEPVDIFGK-TYWSLSNYTNKTLQMF 125
The following BLAST results are available for this feature:
BLAST of EMLSAG00000000582 vs. GO
Analysis Date: 2014-04-02 (Blast vs. GO)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000000582 vs. C. finmarchicus
Analysis Date: 2014-05-09 (TblastN vs C. finmarchicus TSA)
Total hits: 1
Match NameE-valueIdentityDescription
gi|592912074|gb|GAXK01046301.1|2.683e+031.34TSA: Calanus finmarchicus comp581353_c0_seq1 trans... [more]
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BLAST of EMLSAG00000000582 vs. L. salmonis peptides
Analysis Date: 2014-05-10 (Blastp vs. self)
Total hits: 4
Match NameE-valueIdentityDescription
EMLSAP000000005821.130e-111100.00pep:novel supercontig:LSalAtl2s:LSalAtl2s1099:4112... [more]
EMLSAP000000111188.553e-1741.18pep:novel supercontig:LSalAtl2s:LSalAtl2s7539:315:... [more]
EMLSAP000000076951.623e-1334.33pep:novel supercontig:LSalAtl2s:LSalAtl2s4487:6203... [more]
EMLSAP000000082411.927e-1333.33pep:novel supercontig:LSalAtl2s:LSalAtl2s4989:1444... [more]
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BLAST of EMLSAG00000000582 vs. SwissProt
Analysis Date: 2017-02-10 (Blastp vs. SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000000582 vs. Select Arthropod Genomes
Analysis Date: 2017-02-20 (Blastp vs. Selected Arthropods)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000000582 vs. nr
Analysis Date: 2017-02-20 (Blastp vs. NR (2/2017))
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000000582 vs. Tigriopus kingsejongenis genes
Analysis Date: 2018-04-18 (Blastp vs. Tigriopus kingsejongensis proteins)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
LSalAtl2s1099supercontigLSalAtl2s1099:41129..41757 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
ensembl2013-09-26 .965016
Blast vs. GO2014-04-02
TblastN vs C. finmarchicus TSA2014-05-09
Blastp vs. self2014-05-10
Blastp vs. SwissProt2017-02-10
Blastp vs. Selected Arthropods2017-02-20
Blastp vs. NR (2/2017)2017-02-20
Blastp vs. Tigriopus kingsejongensis proteins2018-04-18
Properties
Property NameValue
Logic nameensemblgenomes
Descriptionmaker-LSalAtl2s1099-snap-gene-0.11
Biotypeprotein_coding
EvidenceIEA
NoteHypothetical protein
Cross References
External references for this gene
DatabaseAccession
Ensembl Metazoa (gene)EMLSAG00000000582 (primary cross-reference)
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
EMLSAT00000000582EMLSAT00000000582-696429Lepeophtheirus salmonismRNA


Sequences
The following sequences are available for this feature:

gene from alignment at LSalAtl2s1099:41129..41757-

Legend: mRNA
Hold the cursor over a type above to highlight its positions in the sequence below.
>EMLSAG00000000582-683348 ID=EMLSAG00000000582-683348|Name=EMLSAG00000000582|organism=Lepeophtheirus salmonis|type=gene|length=629bp|location=Sequence derived from alignment at LSalAtl2s1099:41129..41757- (Lepeophtheirus salmonis)
ATGAAGTTGATCAAATACATAGCTTTGGTTCAAACCTTTTTACTTGTAGT
AGACTATTGTTCTGCTGATACATAGTAAGTATACTTAGATACCTAATTTG
TATATACAATGTGGGCTTTTTCAGTGAGTCTCCATTTCAAGGAAAGTGGT
GTGAATATTGTAGTACACGAGATCAGGTTCAAGAATTCATGACAAAACTT
GGTATTTTTAGTTCATCTCCACATTACGATCATTTTATTTAACAAAATTT
ATTTTTTACAGAATTCCCGAGAGAAACGACCGCTACATATGTTAATGCAA
ACCCTGTTAATTTAACAATACATTATAATCAAACTAATCAAATGCATGTC
ATCTATGGTCAAGGTAAAACCTAAATATGTCTATATATTTTTTGAGAAGT
AAATGTGAATATTGTTTTCATCCTTTAAGATCCTACCGGAGTGGATTTTC
AATTAAATTTTCCCTGGAAGGCGAATAGATTTTTTACTCGTGCTGACTTC
TTTGGAAAACATGCTTATTTCAAATCTGCACACTACGAAAATGAATTATT
TATGAATTTTTACCCAGATCAATTAGGTGTTACACTTTATTTTAAGTTTG
AATTTACTGTAGATGAAAAAGATACGTAA
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