EMLSAG00000000693, EMLSAG00000000693-683459 (gene) Lepeophtheirus salmonis
Overview
Associated RNAi Experiments
Homology
BLAST of EMLSAG00000000693 vs. C. finmarchicus
Match: gi|592923728|gb|GAXK01034687.1| (TSA: Calanus finmarchicus comp7364746_c0_seq1 transcribed RNA sequence) HSP 1 Score: 31.187 bits (69), Expect = 1.179e+0 Identity = 25/68 (36.76%), Postives = 35/68 (51.47%), Query Frame = 0 Query: 129 SNKMVSHSDVCADDFVKKSAELFQTSTQFDDIAIF-------HLVSLFEQVLSDSELSKDRLKLISQY 189 K +S VCA D + K FQT F + + HL+ LFEQ+L+D L +DRL+L +Y Sbjct: 102 QQKCLSFFLVCA*DQLPKH---FQTVLLFLCLCMLNTSRIQLHLL-LFEQILTDLLLHEDRLRLAPKY 293
BLAST of EMLSAG00000000693 vs. C. finmarchicus
Match: gi|592801864|gb|GAXK01152704.1| (TSA: Calanus finmarchicus comp3406715_c0_seq1 transcribed RNA sequence) HSP 1 Score: 30.0314 bits (66), Expect = 4.545e+0 Identity = 17/46 (36.96%), Postives = 24/46 (52.17%), Query Frame = 0 Query: 113 GDSHLSHIISNIKRLLSNKMVSHSDVCADDFVKKSAELFQTSTQFD 158 G S H+I IK +L+N V + + V+K ELF+T FD Sbjct: 227 GRSDTKHVIKKIKDVLTNLQVFNVVIPNKPDVRKVIELFETEYMFD 364
BLAST of EMLSAG00000000693 vs. L. salmonis peptides
Match: EMLSAP00000000693 (pep:novel supercontig:LSalAtl2s:LSalAtl2s110:423442:424167:-1 gene:EMLSAG00000000693 transcript:EMLSAT00000000693 description:"maker-LSalAtl2s110-augustus-gene-4.22") HSP 1 Score: 442.195 bits (1136), Expect = 4.363e-159 Identity = 217/217 (100.00%), Postives = 217/217 (100.00%), Query Frame = 0 Query: 1 NCPVTPDANQTTYGSVYPHLSYRHDLTFRDLQLASSFPNNSNQFLNESNMEILHNSLLESKWKPKDKIFVDLNNTLDEKDNIDYNSTILANNNNNNSSVLEPMFQIFRDIKSGDSHLSHIISNIKRLLSNKMVSHSDVCADDFVKKSAELFQTSTQFDDIAIFHLVSLFEQVLSDSELSKDRLKLISQYCRSPLAKLAMAGNPEISKRAENCLNLLQ 217 NCPVTPDANQTTYGSVYPHLSYRHDLTFRDLQLASSFPNNSNQFLNESNMEILHNSLLESKWKPKDKIFVDLNNTLDEKDNIDYNSTILANNNNNNSSVLEPMFQIFRDIKSGDSHLSHIISNIKRLLSNKMVSHSDVCADDFVKKSAELFQTSTQFDDIAIFHLVSLFEQVLSDSELSKDRLKLISQYCRSPLAKLAMAGNPEISKRAENCLNLLQ Sbjct: 1 NCPVTPDANQTTYGSVYPHLSYRHDLTFRDLQLASSFPNNSNQFLNESNMEILHNSLLESKWKPKDKIFVDLNNTLDEKDNIDYNSTILANNNNNNSSVLEPMFQIFRDIKSGDSHLSHIISNIKRLLSNKMVSHSDVCADDFVKKSAELFQTSTQFDDIAIFHLVSLFEQVLSDSELSKDRLKLISQYCRSPLAKLAMAGNPEISKRAENCLNLLQ 217 The following BLAST results are available for this feature:
BLAST of EMLSAG00000000693 vs. GO
Analysis Date: 2014-04-02 (Blast vs. GO) Total hits: 0
BLAST of EMLSAG00000000693 vs. C. finmarchicus
Analysis Date: 2014-05-09 (TblastN vs C. finmarchicus TSA) Total hits: 2
BLAST of EMLSAG00000000693 vs. L. salmonis peptides
Analysis Date: 2014-05-10 (Blastp vs. self) Total hits: 1
BLAST of EMLSAG00000000693 vs. SwissProt
Analysis Date: 2017-02-10 (Blastp vs. SwissProt) Total hits: 0
BLAST of EMLSAG00000000693 vs. Select Arthropod Genomes
Analysis Date: 2017-02-20 (Blastp vs. Selected Arthropods) Total hits: 0
BLAST of EMLSAG00000000693 vs. nr
Analysis Date: 2017-02-20 (Blastp vs. NR (2/2017)) Total hits: 0
BLAST of EMLSAG00000000693 vs. Tigriopus kingsejongenis genes
Analysis Date: 2018-04-18 (Blastp vs. Tigriopus kingsejongensis proteins) Total hits: 0
Alignments
The following features are aligned
Analyses
This gene is derived from or has results from the following analyses
Properties
Cross References
External references for this gene
Relationships
The following mRNA feature(s) are a part of this gene:
Sequences
The following sequences are available for this feature:
gene from alignment at LSalAtl2s110:423442..424167- Legend: mRNA Hold the cursor over a type above to highlight its positions in the sequence below.>EMLSAG00000000693-683459 ID=EMLSAG00000000693-683459|Name=EMLSAG00000000693|organism=Lepeophtheirus salmonis|type=gene|length=726bp|location=Sequence derived from alignment at LSalAtl2s110:423442..424167- (Lepeophtheirus salmonis)back to top Add to Basket
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