EMLSAG00000000723, EMLSAG00000000723-683489 (gene) Lepeophtheirus salmonis
Overview
Associated RNAi Experiments
Nothing found Homology
BLAST of EMLSAG00000000723 vs. C. finmarchicus
Match: gi|592770443|gb|GAXK01184125.1| (TSA: Calanus finmarchicus comp134519_c2_seq1 transcribed RNA sequence) HSP 1 Score: 33.4982 bits (75), Expect = 7.059e-2 Identity = 25/96 (26.04%), Postives = 41/96 (42.71%), Query Frame = 0 Query: 11 FAVCSAA-SLPVPVEDKYDSGKLCTMIFKKVNDQITHEYDLDAILYTLHMECFIVFMNNGKWQKRCHAFVDNVVKPQLEGILGHNVPPKQTCRALG 105 FA C A+ S E + LC + + D IT + +D IL + C + G + C +++ + +EGIL + P Q C +G Sbjct: 52 FAACLASLSFGSTAEVSSATCDLCIAVVTGLEDYITDDTTMDQILEKVEEICKTL----GALEGLCIQTIESYLPGIIEGILDGQLNPNQICALIG 327
BLAST of EMLSAG00000000723 vs. C. finmarchicus
Match: gi|592858460|gb|GAXK01099102.1| (TSA: Calanus finmarchicus comp238732_c0_seq1 transcribed RNA sequence) HSP 1 Score: 30.0314 bits (66), Expect = 1.474e+0 Identity = 18/49 (36.73%), Postives = 20/49 (40.82%), Query Frame = 0 Query: 19 LPVPVEDKYDSGKLCTMIFKKVNDQITHEYDLDAILYTLHMECFIVFMN 67 LPV Y LCT+I K V IT L L CF+ MN Sbjct: 969 LPVLAMFSYHVSVLCTLITKLVITNITSNTFFSTFLLILISLCFVFLMN 1115
BLAST of EMLSAG00000000723 vs. C. finmarchicus
Match: gi|592778098|gb|GAXK01176470.1| (TSA: Calanus finmarchicus comp3490_c3_seq1 transcribed RNA sequence) HSP 1 Score: 28.8758 bits (63), Expect = 3.648e+0 Identity = 14/38 (36.84%), Postives = 23/38 (60.53%), Query Frame = 0 Query: 1 MKLFLIIATLFAVCSAASLP------VPVEDKYDSGKL 32 MK FL+ + FA SAA+LP +P++D+ G++ Sbjct: 929 MKFFLVASLAFAATSAANLPSHPLPALPLQDQVGVGRI 1042
BLAST of EMLSAG00000000723 vs. C. finmarchicus
Match: gi|592757009|gb|GAXK01197404.1| (TSA: Calanus finmarchicus comp344014_c1_seq2 transcribed RNA sequence) HSP 1 Score: 28.1054 bits (61), Expect = 7.565e+0 Identity = 16/41 (39.02%), Postives = 24/41 (58.54%), Query Frame = 0 Query: 10 LFAVCSAASLPVPVEDKYDSGKLCTMIFKKVNDQITHEYDL 50 +F + SA S+ V ++S T ++VNDQIT EYD+ Sbjct: 918 IFHLLSALSILYIVIYPHESRWFETCRKRRVNDQITQEYDM 1040
BLAST of EMLSAG00000000723 vs. C. finmarchicus
Match: gi|592757010|gb|GAXK01197403.1| (TSA: Calanus finmarchicus comp344014_c1_seq1 transcribed RNA sequence) HSP 1 Score: 28.1054 bits (61), Expect = 7.623e+0 Identity = 16/41 (39.02%), Postives = 24/41 (58.54%), Query Frame = 0 Query: 10 LFAVCSAASLPVPVEDKYDSGKLCTMIFKKVNDQITHEYDL 50 +F + SA S+ V ++S T ++VNDQIT EYD+ Sbjct: 918 IFHLLSALSILYIVIYPHESRWFETCRKRRVNDQITQEYDM 1040
BLAST of EMLSAG00000000723 vs. L. salmonis peptides
Match: EMLSAP00000000723 (pep:novel supercontig:LSalAtl2s:LSalAtl2s1115:1254:1670:-1 gene:EMLSAG00000000723 transcript:EMLSAT00000000723 description:"maker-LSalAtl2s1115-snap-gene-0.4") HSP 1 Score: 226.483 bits (576), Expect = 1.381e-77 Identity = 107/107 (100.00%), Postives = 107/107 (100.00%), Query Frame = 0 Query: 1 MKLFLIIATLFAVCSAASLPVPVEDKYDSGKLCTMIFKKVNDQITHEYDLDAILYTLHMECFIVFMNNGKWQKRCHAFVDNVVKPQLEGILGHNVPPKQTCRALGYY 107 MKLFLIIATLFAVCSAASLPVPVEDKYDSGKLCTMIFKKVNDQITHEYDLDAILYTLHMECFIVFMNNGKWQKRCHAFVDNVVKPQLEGILGHNVPPKQTCRALGYY Sbjct: 1 MKLFLIIATLFAVCSAASLPVPVEDKYDSGKLCTMIFKKVNDQITHEYDLDAILYTLHMECFIVFMNNGKWQKRCHAFVDNVVKPQLEGILGHNVPPKQTCRALGYY 107
BLAST of EMLSAG00000000723 vs. L. salmonis peptides
Match: EMLSAP00000011667 (pep:novel supercontig:LSalAtl2s:LSalAtl2s80:923664:924312:1 gene:EMLSAG00000011667 transcript:EMLSAT00000011667 description:"maker-LSalAtl2s80-augustus-gene-9.25") HSP 1 Score: 125.946 bits (315), Expect = 3.984e-38 Identity = 61/106 (57.55%), Postives = 77/106 (72.64%), Query Frame = 0 Query: 1 MKLFLIIATLFAVCSAASLPVPVEDKYDSGKLCTMIFKKVNDQITHEYDLDAILYTLHMECFIVFMNNGKWQKRCHAFVDNVVKPQLEGILGHNVPPKQTCRALGY 106 MK FL+ ATL VC++ SLPV E+K D+ KLC IFKK+N+ I +D I+ TL +EC I FM KW+K+C+AFV+NVVKPQLEG +GH PPK+TCR LGY Sbjct: 1 MKFFLMFATLIVVCNSVSLPV--EEKLDNCKLCKFIFKKINNAIADGLGVDKIVDTLKIECKIFFMYRPKWEKKCYAFVNNVVKPQLEGFMGHIAPPKRTCRFLGY 104
BLAST of EMLSAG00000000723 vs. L. salmonis peptides
Match: EMLSAP00000000730 (pep:novel supercontig:LSalAtl2s:LSalAtl2s1117:123079:123572:-1 gene:EMLSAG00000000730 transcript:EMLSAT00000000730 description:"maker-LSalAtl2s1117-augustus-gene-1.22") HSP 1 Score: 123.635 bits (309), Expect = 8.179e-37 Identity = 60/106 (56.60%), Postives = 76/106 (71.70%), Query Frame = 0 Query: 1 MKLFLIIATLFAVCSAASLPVPVEDKYDSGKLCTMIFKKVNDQITHEYDLDAILYTLHMECFIVFMNNGKWQKRCHAFVDNVVKPQLEGILGHNVPPKQTCRALGY 106 MK L+ AT+ VC++ S +PVE+K D+ KLC IFKKVN I + I+ T+ +EC I FM KW+K+C+AFVDNVVKPQLEG++GH VPPKQTCR LGY Sbjct: 37 MKFVLMFATVIVVCNSVS--IPVEEKLDNCKLCEFIFKKVNAAIADGLGVGKIVDTMKIECKIFFMYRPKWEKKCYAFVDNVVKPQLEGLMGHIVPPKQTCRLLGY 140
BLAST of EMLSAG00000000723 vs. L. salmonis peptides
Match: EMLSAP00000008834 (pep:novel supercontig:LSalAtl2s:LSalAtl2s54:712754:713146:-1 gene:EMLSAG00000008834 transcript:EMLSAT00000008834 description:"maker-LSalAtl2s54-snap-gene-6.37") HSP 1 Score: 51.2174 bits (121), Expect = 1.026e-9 Identity = 30/103 (29.13%), Postives = 53/103 (51.46%), Query Frame = 0 Query: 1 MKLFLIIATLFAVCSAASLPVP-VEDKYDSGKLCTMIFKKVNDQITHEYDLDAILYTLHMECFIVFMNNGKWQKRCHAFVDNVVKPQLEGILGHNVPPKQTCR 102 M++F++ A L AV SA ++ P +K C + K+N+ + E ++D L L C V +G + C F++ VVKP++E +L P++ C+ Sbjct: 1 MRVFILCA-LIAVASATTIGEPKFNEKTMKCDFCKFVLGKINESVFSEENVDEALQQLDEICDKVEEVSGFLGETCDKFIEEVVKPKIEDLLATKPTPEEACK 102 The following BLAST results are available for this feature:
BLAST of EMLSAG00000000723 vs. GO
Analysis Date: 2014-04-02 (Blast vs. GO) Total hits: 0
BLAST of EMLSAG00000000723 vs. C. finmarchicus
Analysis Date: 2014-05-09 (TblastN vs C. finmarchicus TSA) Total hits: 5
BLAST of EMLSAG00000000723 vs. L. salmonis peptides
Analysis Date: 2014-05-10 (Blastp vs. self) Total hits: 4
BLAST of EMLSAG00000000723 vs. SwissProt
Analysis Date: 2017-02-10 (Blastp vs. SwissProt) Total hits: 0
BLAST of EMLSAG00000000723 vs. Select Arthropod Genomes
Analysis Date: 2017-02-20 (Blastp vs. Selected Arthropods) Total hits: 0
BLAST of EMLSAG00000000723 vs. nr
Analysis Date: 2017-02-20 (Blastp vs. NR (2/2017)) Total hits: 0
BLAST of EMLSAG00000000723 vs. Tigriopus kingsejongenis genes
Analysis Date: 2018-04-18 (Blastp vs. Tigriopus kingsejongensis proteins) Total hits: 0
Alignments
The following features are aligned
Analyses
This gene is derived from or has results from the following analyses
Properties
Cross References
External references for this gene
Relationships
The following mRNA feature(s) are a part of this gene:
Sequences
The following sequences are available for this feature:
gene from alignment at LSalAtl2s1115:1254..1670- Legend: mRNA Hold the cursor over a type above to highlight its positions in the sequence below.>EMLSAG00000000723-683489 ID=EMLSAG00000000723-683489|Name=EMLSAG00000000723|organism=Lepeophtheirus salmonis|type=gene|length=417bp|location=Sequence derived from alignment at LSalAtl2s1115:1254..1670- (Lepeophtheirus salmonis)back to top Add to Basket
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