EMLSAG00000000856, EMLSAG00000000856-683622 (gene) Lepeophtheirus salmonis
Overview
Associated RNAi Experiments
Nothing found Homology
BLAST of EMLSAG00000000856 vs. C. finmarchicus
Match: gi|592935011|gb|GAXK01023542.1| (TSA: Calanus finmarchicus comp115244_c1_seq2 transcribed RNA sequence) HSP 1 Score: 77.411 bits (189), Expect = 3.991e-17 Identity = 36/98 (36.73%), Postives = 62/98 (63.27%), Query Frame = 0 Query: 3 ATRNLYLSGGFSFFALVLWLLPTFLWTGTPLPTKSKKRRESRFINIIKHVRSGSNAVDIYNRLMCPQCVLVVMAINFLALMSRYIFWSVLSASPDLPS 100 +TRNL+L+ GF+ +LW+LPTFL T P K E R + ++ +G++ + ++NRL+CPQC+L ++ IN + + +FW+ +S+ PD P+ Sbjct: 519 STRNLFLNIGFAVGGHILWILPTFLGT-LPDAEKRADDSEDRLGGLPSNL-AGADPIALWNRLLCPQCILQIVGINSINYFGKLLFWTFMSSVPDAPA 806
BLAST of EMLSAG00000000856 vs. C. finmarchicus
Match: gi|592935012|gb|GAXK01023541.1| (TSA: Calanus finmarchicus comp115244_c1_seq1 transcribed RNA sequence) HSP 1 Score: 77.411 bits (189), Expect = 4.264e-17 Identity = 36/98 (36.73%), Postives = 62/98 (63.27%), Query Frame = 0 Query: 3 ATRNLYLSGGFSFFALVLWLLPTFLWTGTPLPTKSKKRRESRFINIIKHVRSGSNAVDIYNRLMCPQCVLVVMAINFLALMSRYIFWSVLSASPDLPS 100 +TRNL+L+ GF+ +LW+LPTFL T P K E R + ++ +G++ + ++NRL+CPQC+L ++ IN + + +FW+ +S+ PD P+ Sbjct: 534 STRNLFLNIGFAVGGHILWILPTFLGT-LPDAEKRADDSEDRLGGLPSNL-AGADPIALWNRLLCPQCILQIVGINSINYFGKLLFWTFMSSVPDAPA 821
BLAST of EMLSAG00000000856 vs. C. finmarchicus
Match: gi|592930442|gb|GAXK01028103.1| (TSA: Calanus finmarchicus comp710900_c0_seq1 transcribed RNA sequence) HSP 1 Score: 68.1662 bits (165), Expect = 2.229e-13 Identity = 37/117 (31.62%), Postives = 66/117 (56.41%), Query Frame = 0 Query: 3 ATRNLYLSGGFSFFALVLWLLPTFLWTGTPLPTKSKKRRESRFINIIKHVRS----------------GSNAVDIYNRLMCPQCVLVVMAINFLALMSRYIFWSVLSASPDLPSFGV 103 +TRNLYL+ GF+ + +LW+LPTF GT ++++R +S + + + G+ VD++NR + PQ +L ++AIN L + + +FW+ +S+ PD+P+ V Sbjct: 853 STRNLYLNIGFALGSHLLWILPTFF--GTLPEERTEERFDSESVQLGTLLDPDFEAADRLGGLPANLLGAELVDLWNRTLSPQGILQIIAINALNWLGKMVFWTFMSSVPDVPAETV 1197
BLAST of EMLSAG00000000856 vs. C. finmarchicus
Match: gi|592943261|gb|GAXK01015292.1| (TSA: Calanus finmarchicus comp631634_c0_seq4 transcribed RNA sequence) HSP 1 Score: 54.299 bits (129), Expect = 8.146e-9 Identity = 28/105 (26.67%), Postives = 49/105 (46.67%), Query Frame = 0 Query: 5 RNLYLSGGFSFFALVLWLLPTFLWTGTPL--PTKSKKRRESRFINIIKHVR----------SGSNAVDIYNRLMCPQCVLVVMAINFLALMSRYIFWSVLSASPD 97 RNL + F W +P+ LW + L +K ES + + + + + DIYNRL+CP C++ ++ IN + ++ IFWS ++ P+ Sbjct: 102 RNLLVCTSFFLITSTFWFVPSLLWKKSFLLPNSKDDSTAESSLADTVHSSQERVSGIVSAIANTGVADIYNRLLCPTCIVQIIFINTMLFAAQMIFWSTITFLPN 416
BLAST of EMLSAG00000000856 vs. C. finmarchicus
Match: gi|592943262|gb|GAXK01015291.1| (TSA: Calanus finmarchicus comp631634_c0_seq3 transcribed RNA sequence) HSP 1 Score: 54.299 bits (129), Expect = 8.926e-9 Identity = 28/105 (26.67%), Postives = 49/105 (46.67%), Query Frame = 0 Query: 5 RNLYLSGGFSFFALVLWLLPTFLWTGTPL--PTKSKKRRESRFINIIKHVR----------SGSNAVDIYNRLMCPQCVLVVMAINFLALMSRYIFWSVLSASPD 97 RNL + F W +P+ LW + L +K ES + + + + + DIYNRL+CP C++ ++ IN + ++ IFWS ++ P+ Sbjct: 102 RNLLVCTSFFLITSTFWFVPSLLWKKSFLLPNSKDDSTAESSLADTVHSSQERVSGIVSAIANTGVADIYNRLLCPTCIVQIIFINTMLFAAQMIFWSTITFLPN 416
BLAST of EMLSAG00000000856 vs. C. finmarchicus
Match: gi|592943264|gb|GAXK01015289.1| (TSA: Calanus finmarchicus comp631634_c0_seq1 transcribed RNA sequence) HSP 1 Score: 53.9138 bits (128), Expect = 1.337e-8 Identity = 28/105 (26.67%), Postives = 49/105 (46.67%), Query Frame = 0 Query: 5 RNLYLSGGFSFFALVLWLLPTFLWTGTPL--PTKSKKRRESRFINIIKHVR----------SGSNAVDIYNRLMCPQCVLVVMAINFLALMSRYIFWSVLSASPD 97 RNL + F W +P+ LW + L +K ES + + + + + DIYNRL+CP C++ ++ IN + ++ IFWS ++ P+ Sbjct: 102 RNLLVCTSFFLITSTFWFVPSLLWKKSFLLPNSKDDSTAESSLADTVHSSQERVSGIVSAIANTGVADIYNRLLCPTCIVQIIFINTMLFAAQMIFWSTITFLPN 416
BLAST of EMLSAG00000000856 vs. C. finmarchicus
Match: gi|592943263|gb|GAXK01015290.1| (TSA: Calanus finmarchicus comp631634_c0_seq2 transcribed RNA sequence) HSP 1 Score: 53.5286 bits (127), Expect = 1.377e-8 Identity = 28/105 (26.67%), Postives = 49/105 (46.67%), Query Frame = 0 Query: 5 RNLYLSGGFSFFALVLWLLPTFLWTGTPL--PTKSKKRRESRFINIIKHVR----------SGSNAVDIYNRLMCPQCVLVVMAINFLALMSRYIFWSVLSASPD 97 RNL + F W +P+ LW + L +K ES + + + + + DIYNRL+CP C++ ++ IN + ++ IFWS ++ P+ Sbjct: 102 RNLLVCTSFFLITSTFWFVPSLLWKKSFLLPNSKDDSTAESSLADTVHSSQERVSGIVSAIANTGVADIYNRLLCPTCIVQIIFINTMLFAAQMIFWSTITFLPN 416
BLAST of EMLSAG00000000856 vs. C. finmarchicus
Match: gi|592943258|gb|GAXK01015295.1| (TSA: Calanus finmarchicus comp631634_c0_seq7 transcribed RNA sequence) HSP 1 Score: 45.4394 bits (106), Expect = 1.563e-6 Identity = 19/56 (33.93%), Postives = 34/56 (60.71%), Query Frame = 0 Query: 42 ESRFINIIKHVRSGSNAVDIYNRLMCPQCVLVVMAINFLALMSRYIFWSVLSASPD 97 E R I+ + + + DIYNRL+CP C++ ++ IN + ++ IFWS ++ P+ Sbjct: 92 EERVSGIVSAI-ANTGVADIYNRLLCPTCIVQIIFINTMLFTAQMIFWSTITFLPN 256
BLAST of EMLSAG00000000856 vs. C. finmarchicus
Match: gi|592943259|gb|GAXK01015294.1| (TSA: Calanus finmarchicus comp631634_c0_seq6 transcribed RNA sequence) HSP 1 Score: 45.8246 bits (107), Expect = 2.334e-6 Identity = 19/62 (30.65%), Postives = 36/62 (58.06%), Query Frame = 0 Query: 36 KSKKRRESRFINIIKHVRSGSNAVDIYNRLMCPQCVLVVMAINFLALMSRYIFWSVLSASPD 97 + + E R I+ + + + DIYNRL+CP C++ ++ IN + ++ IFWS ++ P+ Sbjct: 102 DTIQSSEERVSGIVSAI-ANTGVADIYNRLLCPTCIVQIIFINTMLFAAQMIFWSTITFLPN 284
BLAST of EMLSAG00000000856 vs. C. finmarchicus
Match: gi|592930440|gb|GAXK01028105.1| (TSA: Calanus finmarchicus comp710900_c1_seq1 transcribed RNA sequence) HSP 1 Score: 38.1206 bits (87), Expect = 1.457e-3 Identity = 21/43 (48.84%), Postives = 29/43 (67.44%), Query Frame = 0 Query: 3 ATRNLYLSGGFSFFALVLWLLPTFLWTGTPLPTKSKKRRESRF 45 +TRNLYL+ GF+ + +LW+LPTF T LP ++R E RF Sbjct: 42 STRNLYLNIGFALGSHLLWILPTFFGT---LP---EERTEERF 152
BLAST of EMLSAG00000000856 vs. L. salmonis peptides
Match: EMLSAP00000000856 (pep:novel supercontig:LSalAtl2s:LSalAtl2s1144:10023:12314:1 gene:EMLSAG00000000856 transcript:EMLSAT00000000856 description:"maker-LSalAtl2s1144-snap-gene-0.7") HSP 1 Score: 231.876 bits (590), Expect = 2.040e-79 Identity = 115/115 (100.00%), Postives = 115/115 (100.00%), Query Frame = 0 Query: 1 MAATRNLYLSGGFSFFALVLWLLPTFLWTGTPLPTKSKKRRESRFINIIKHVRSGSNAVDIYNRLMCPQCVLVVMAINFLALMSRYIFWSVLSASPDLPSFGVPKTNGRSLXPSK 115 MAATRNLYLSGGFSFFALVLWLLPTFLWTGTPLPTKSKKRRESRFINIIKHVRSGSNAVDIYNRLMCPQCVLVVMAINFLALMSRYIFWSVLSASPDLPSFGVPKTNGRSLXPSK Sbjct: 1 MAATRNLYLSGGFSFFALVLWLLPTFLWTGTPLPTKSKKRRESRFINIIKHVRSGSNAVDIYNRLMCPQCVLVVMAINFLALMSRYIFWSVLSASPDLPSFGVPKTNGRSLXPSK 115
BLAST of EMLSAG00000000856 vs. L. salmonis peptides
Match: EMLSAP00000007317 (pep:novel supercontig:LSalAtl2s:LSalAtl2s411:13808:14618:-1 gene:EMLSAG00000007317 transcript:EMLSAT00000007317 description:"snap_masked-LSalAtl2s411-processed-gene-0.4") HSP 1 Score: 117.857 bits (294), Expect = 1.345e-34 Identity = 55/59 (93.22%), Postives = 57/59 (96.61%), Query Frame = 0 Query: 1 MAATRNLYLSGGFSFFALVLWLLPTFLWTGTPLPTKSKKRRESRFINIIKHVRSGSNAV 59 MAATRNLYLSGGFSFFALVLWLLPTFLWTGTPLPT S K+RESRFINI+KHVRSGSNAV Sbjct: 1 MAATRNLYLSGGFSFFALVLWLLPTFLWTGTPLPTNSDKKRESRFINIVKHVRSGSNAV 59
BLAST of EMLSAG00000000856 vs. L. salmonis peptides
Match: EMLSAP00000009211 (pep:novel supercontig:LSalAtl2s:LSalAtl2s586:131335:134460:1 gene:EMLSAG00000009211 transcript:EMLSAT00000009211 description:"maker-LSalAtl2s586-snap-gene-1.35") HSP 1 Score: 101.679 bits (252), Expect = 1.152e-27 Identity = 44/68 (64.71%), Postives = 54/68 (79.41%), Query Frame = 0 Query: 2 AATRNLYLSGGFSFFALVLWLLPTFLWTGTPLPTKSKKRRESRFINIIKHVRSGSNAVDIYNRLMCPQ 69 AT+NL +SGGF+ F L+LW++PTF W+G PLPTK+ R SR NII HVRSG N+VDIYNRL+CPQ Sbjct: 128 VATQNLIISGGFTLFTLLLWIIPTFFWSGRPLPTKNTDSRVSRLYNIIDHVRSGGNSVDIYNRLLCPQ 195
BLAST of EMLSAG00000000856 vs. Tigriopus kingsejongenis genes
Match: snap_masked-scaffold374_size191929-processed-gene-0.18 (protein:Tk01260 transcript:snap_masked-scaffold374_size191929-processed-gene-0.18-mRNA-1 annotation:"periplasmic solute binding family protein") HSP 1 Score: 68.9366 bits (167), Expect = 2.935e-15 Identity = 39/128 (30.47%), Postives = 62/128 (48.44%), Query Frame = 0 Query: 5 RNLYLSGGFSFFALVLWLLPTFLWTGTPLPTKSKKRR----------------ESRFINIIKHVRSGSNAVDIYNRLMCPQCVLVVMAINFLALMSRYIFWSVLSASPDLPSFGV-----PKTNGRSL 111 RNL ++ GF F L++W LPTF W G+PLPT + ++R + H ++ V I+NRL+CPQC + ++I+ L + +W S+ PD F + +T GR + Sbjct: 187 RNLIMNSGFLAFQLIIWFLPTFFWPGSPLPTPQNMNQTISSPGEGIGIENPLAQNR-VGAFVHNLGEASPVAIHNRLLCPQCFVQTISISTLLYAGKLFWWWWFSSIPDFKRFSIRPSPSTQTQGRHM 313 The following BLAST results are available for this feature:
BLAST of EMLSAG00000000856 vs. GO
Analysis Date: 2014-04-02 (Blast vs. GO) Total hits: 0
BLAST of EMLSAG00000000856 vs. C. finmarchicus
Analysis Date: 2014-05-09 (TblastN vs C. finmarchicus TSA) Total hits: 15
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BLAST of EMLSAG00000000856 vs. L. salmonis peptides
Analysis Date: 2014-05-10 (Blastp vs. self) Total hits: 3
BLAST of EMLSAG00000000856 vs. SwissProt
Analysis Date: 2017-02-10 (Blastp vs. SwissProt) Total hits: 0
BLAST of EMLSAG00000000856 vs. Select Arthropod Genomes
Analysis Date: 2017-02-20 (Blastp vs. Selected Arthropods) Total hits: 0
BLAST of EMLSAG00000000856 vs. nr
Analysis Date: 2017-02-20 (Blastp vs. NR (2/2017)) Total hits: 0
BLAST of EMLSAG00000000856 vs. Tigriopus kingsejongenis genes
Analysis Date: 2018-04-18 (Blastp vs. Tigriopus kingsejongensis proteins) Total hits: 1
Alignments
The following features are aligned
Analyses
This gene is derived from or has results from the following analyses
Properties
Cross References
External references for this gene
Relationships
The following mRNA feature(s) are a part of this gene:
Sequences
The following sequences are available for this feature:
gene from alignment at LSalAtl2s1144:10023..12314+ Legend: mRNA Hold the cursor over a type above to highlight its positions in the sequence below.>EMLSAG00000000856-683622 ID=EMLSAG00000000856-683622|Name=EMLSAG00000000856|organism=Lepeophtheirus salmonis|type=gene|length=2292bp|location=Sequence derived from alignment at LSalAtl2s1144:10023..12314+ (Lepeophtheirus salmonis)back to top Add to Basket
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