EMLSAG00000001327, EMLSAG00000001327-684093 (gene) Lepeophtheirus salmonis
Overview
Associated RNAi Experiments
Nothing found Homology
BLAST of EMLSAG00000001327 vs. C. finmarchicus
Match: gi|592848675|gb|GAXK01108869.1| (TSA: Calanus finmarchicus comp296545_c0_seq2 transcribed RNA sequence) HSP 1 Score: 75.485 bits (184), Expect = 1.243e-16 Identity = 39/82 (47.56%), Postives = 51/82 (62.20%), Query Frame = 0 Query: 10 KAAAPANNVRDCFCQCSSLSFRDKNNRVNGNCRTT-FNGGQWCYITDEAARNGDCPDSNPSTRFPGKKWSYFSCATPSTRQC 90 KAA+P N C CQCSSL+F+DK R+ GNC + G +WCY+ ++A + C D + S RFP WSY +CATP QC Sbjct: 196 KAASPYTN---CDCQCSSLTFQDKYGRIQGNCNSADHTGARWCYV--DSAHHSSCQDLHHSARFPQNPWSYEACATPDRHQC 426
BLAST of EMLSAG00000001327 vs. C. finmarchicus
Match: gi|592932367|gb|GAXK01026186.1| (TSA: Calanus finmarchicus comp18158_c2_seq11 transcribed RNA sequence) HSP 1 Score: 75.0998 bits (183), Expect = 1.922e-16 Identity = 44/88 (50.00%), Postives = 53/88 (60.23%), Query Frame = 0 Query: 1 SLSEAQTVLKAAAPANNVRDCFCQCSSLSFRDKNNRVNGNC-RTTFNGGQWCYITDEAARNGDCPD-SNPSTRFPGKKWSYFSCATPS 86 S+ T KAA+P N C CQCS+L+F+DK +GNC R G QWCY+ R G C D S STRFPGK WSY +CATP+ Sbjct: 205 SVKTTDTNTKAASPYTN---CGCQCSNLTFKDKYGNTHGNCKRVDHTGAQWCYVD---PRQGSCQDLSYTSTRFPGKPWSYEACATPA 450
BLAST of EMLSAG00000001327 vs. C. finmarchicus
Match: gi|592932369|gb|GAXK01026184.1| (TSA: Calanus finmarchicus comp18158_c2_seq9 transcribed RNA sequence) HSP 1 Score: 75.0998 bits (183), Expect = 2.086e-16 Identity = 44/88 (50.00%), Postives = 53/88 (60.23%), Query Frame = 0 Query: 1 SLSEAQTVLKAAAPANNVRDCFCQCSSLSFRDKNNRVNGNC-RTTFNGGQWCYITDEAARNGDCPD-SNPSTRFPGKKWSYFSCATPS 86 S+ T KAA+P N C CQCS+L+F+DK +GNC R G QWCY+ R G C D S STRFPGK WSY +CATP+ Sbjct: 205 SVKTTDTNTKAASPYTN---CGCQCSNLTFKDKYGNTHGNCKRVDHTGAQWCYVD---PRQGSCQDLSYTSTRFPGKPWSYEACATPA 450
BLAST of EMLSAG00000001327 vs. C. finmarchicus
Match: gi|592848676|gb|GAXK01108868.1| (TSA: Calanus finmarchicus comp296545_c0_seq1 transcribed RNA sequence) HSP 1 Score: 75.0998 bits (183), Expect = 3.176e-16 Identity = 39/82 (47.56%), Postives = 51/82 (62.20%), Query Frame = 0 Query: 10 KAAAPANNVRDCFCQCSSLSFRDKNNRVNGNCRTT-FNGGQWCYITDEAARNGDCPDSNPSTRFPGKKWSYFSCATPSTRQC 90 KAA+P N C CQCSSL+F+DK R+ GNC + G +WCY+ ++A + C D + S RFP WSY +CATP QC Sbjct: 124 KAASPYTN---CDCQCSSLNFQDKYGRIQGNCNSADHTGARWCYV--DSAHHSSCQDLHHSVRFPNNPWSYEACATPDRHQC 354 HSP 2 Score: 74.3294 bits (181), Expect = 6.435e-16 Identity = 39/82 (47.56%), Postives = 50/82 (60.98%), Query Frame = 0 Query: 10 KAAAPANNVRDCFCQCSSLSFRDKNNRVNGNCRTT-FNGGQWCYITDEAARNGDCPDSNPSTRFPGKKWSYFSCATPSTRQC 90 KAA+P N C CQCSSL+F+DK R+ GNC + G +WCY+ ++A + C D S RFP WSY +CATP QC Sbjct: 512 KAASPYTN---CDCQCSSLTFQDKYGRIQGNCNSADHTGARWCYV--DSAHHSSCQDLQHSARFPQNPWSYEACATPDRHQC 742
BLAST of EMLSAG00000001327 vs. C. finmarchicus
Match: gi|592932379|gb|GAXK01026174.1| (TSA: Calanus finmarchicus comp18158_c1_seq4 transcribed RNA sequence) HSP 1 Score: 74.3294 bits (181), Expect = 3.383e-16 Identity = 39/77 (50.65%), Postives = 47/77 (61.04%), Query Frame = 0 Query: 10 KAAAPANNVRDCFCQCSSLSFRDKNNRVNGNCRTT-FNGGQWCYITDEAARNGDCPDSNPSTRFPGKKWSYFSCATP 85 KAA+P N C CQCSSL+FRD + V GNC+T G QWCY+ ++ C D PS RFP WSY +CATP Sbjct: 109 KAASPFTN---CGCQCSSLTFRDTSGTVQGNCKTVDGTGAQWCYVDSSSSS---CQDLVPSERFPHNPWSYEACATP 321
BLAST of EMLSAG00000001327 vs. C. finmarchicus
Match: gi|592906544|gb|GAXK01051831.1| (TSA: Calanus finmarchicus comp28981_c1_seq1 transcribed RNA sequence) HSP 1 Score: 73.559 bits (179), Expect = 7.286e-16 Identity = 39/98 (39.80%), Postives = 50/98 (51.02%), Query Frame = 0 Query: 7 TVLKAAAPANNVRDCFCQCSSLSFRDKNNRVNGNCRTT-FNGGQWCYITDEAARNGDCPDSNPSTRFPGKKWSYFSCATPSTRQCVLDAVRNGGCFPQ 103 TV KAA+P N+ CQCSSL+F D + + GNC++ G QWCY+ + C D S RFP WSY +CATP+ Q V P Sbjct: 329 TVEKAASPYTNIG---CQCSSLTFIDSSGHIQGNCKSVDHTGAQWCYVDH---LHSSCQDLVHSARFPNNPWSYEACATPAVYQPVQAPYHQPAHLPH 604
BLAST of EMLSAG00000001327 vs. C. finmarchicus
Match: gi|592932381|gb|GAXK01026172.1| (TSA: Calanus finmarchicus comp18158_c1_seq2 transcribed RNA sequence) HSP 1 Score: 74.3294 bits (181), Expect = 8.286e-16 Identity = 40/87 (45.98%), Postives = 54/87 (62.07%), Query Frame = 0 Query: 1 SLSEAQTVLKAAAPANNVRDCFCQCSSLSFRDKNNRVNGNCRTT-FNGGQWCYITDEAARNGDCPDSNPSTRFPGKKWSYFSCATPS 86 S + ++T+ KA++P N C CQCSSL+FRD N + GNC+T G QWCY+ + + C D PS RFP WSY +CATP+ Sbjct: 79 STTYSKTLNKASSPYTN---CGCQCSSLTFRDSANIIQGNCKTVDSTGAQWCYVD---SSHSSCQDLVPSQRFPHNPWSYEACATPA 321
BLAST of EMLSAG00000001327 vs. C. finmarchicus
Match: gi|592932378|gb|GAXK01026175.1| (TSA: Calanus finmarchicus comp18158_c1_seq5 transcribed RNA sequence) HSP 1 Score: 71.2478 bits (173), Expect = 1.061e-15 Identity = 39/85 (45.88%), Postives = 52/85 (61.18%), Query Frame = 0 Query: 1 SLSEAQTVLKAAAPANNVRDCFCQCSSLSFRDKNNRVNGNCRTT-FNGGQWCYITDEAARNGDCPDSNPSTRFPGKKWSYFSCAT 84 S + ++T+ KA++P N C CQCSSL+FRD N + GNC+T G QWCY+ + + C D PS RFP WSY +CAT Sbjct: 79 STTYSKTLNKASSPYTN---CGCQCSSLTFRDSANIIQGNCKTVDSTGAQWCYVD---SSHSSCQDLVPSQRFPHNPWSYEACAT 315
BLAST of EMLSAG00000001327 vs. C. finmarchicus
Match: gi|592932380|gb|GAXK01026173.1| (TSA: Calanus finmarchicus comp18158_c1_seq3 transcribed RNA sequence) HSP 1 Score: 71.633 bits (174), Expect = 3.749e-15 Identity = 35/72 (48.61%), Postives = 45/72 (62.50%), Query Frame = 0 Query: 15 ANNVRDCFCQCSSLSFRDKNNRVNGNCRTT-FNGGQWCYITDEAARNGDCPDSNPSTRFPGKKWSYFSCATP 85 A++ +C CQCS+LSFRD + V GNC+T G QWCY+ ++ C D PS RFP WSY +CATP Sbjct: 178 ASSFTNCGCQCSNLSFRDTSGIVQGNCKTVDGTGAQWCYVDSSSSS---CQDLVPSERFPHNPWSYEACATP 384
BLAST of EMLSAG00000001327 vs. C. finmarchicus
Match: gi|592953585|gb|GAXK01004968.1| (TSA: Calanus finmarchicus comp348412_c0_seq1 transcribed RNA sequence) HSP 1 Score: 69.3218 bits (168), Expect = 1.077e-14 Identity = 35/79 (44.30%), Postives = 50/79 (63.29%), Query Frame = 0 Query: 15 ANNVRDCFCQCSSLSFRDKNNRVNGNCRTTFN-GGQWCYITDEAARNGDCPDSNPSTRFPGKKWSYFSCATP--STRQC 90 A+ +C CQCSSL+FRD+ +V+GNC++ + G QWCYI+ + C D S +FP WSY +CATP S+ +C Sbjct: 131 ASTYVNCGCQCSSLTFRDEYGKVHGNCKSVDDKGAQWCYIS--STHYSSCEDLQLSAKFPNNPWSYTACATPDLSSYEC 361
BLAST of EMLSAG00000001327 vs. L. salmonis peptides
Match: EMLSAP00000006141 (pep:novel supercontig:LSalAtl2s:LSalAtl2s335:388935:390297:1 gene:EMLSAG00000006141 transcript:EMLSAT00000006141 description:"maker-LSalAtl2s335-snap-gene-4.14") HSP 1 Score: 45.4394 bits (106), Expect = 4.460e-7 Identity = 29/80 (36.25%), Postives = 41/80 (51.25%), Query Frame = 0 Query: 7 TVLKAAAPANNVRDCFCQCSSLSFRDKNNRVNGNCRTT-FNGGQWCYITDEAARNGDCPDSNPSTRFPGKKWSYFSCATP 85 +LKAA+ N C CQC++ F+DK R GNC T +G +WCY++ N S R ++ S +CATP Sbjct: 22 IILKAASSRTN---CGCQCNNYIFKDKYGRTQGNCNTADKSGAKWCYVSRGNTCNDVTYSSRKDERGQPRRISNEACATP 98
BLAST of EMLSAG00000001327 vs. L. salmonis peptides
Match: EMLSAP00000001015 (pep:novel supercontig:LSalAtl2s:LSalAtl2s116:786764:792986:-1 gene:EMLSAG00000001015 transcript:EMLSAT00000001015 description:"maker-LSalAtl2s116-augustus-gene-8.13") HSP 1 Score: 45.8246 bits (107), Expect = 5.160e-7 Identity = 33/88 (37.50%), Postives = 42/88 (47.73%), Query Frame = 0 Query: 3 SEAQTVLKAAAPANNVRDCFCQCSSLSFRDKNNRVNGNCRTT-FNGGQWCYITDEAARNGDCPDSNPSTRFPG----KKWSYFSCATP 85 S LKA + A N C CQCS+ FRD N GNC + G +WCY+ R C D+ S R ++ SY +CATP Sbjct: 16 SAQDITLKAPSLAVN---CGCQCSNYIFRDGNGITQGNCNSADRTGAKWCYV----ERGHTCQDTRRSXRRDNFGRLRQISYEACATP 96
BLAST of EMLSAG00000001327 vs. L. salmonis peptides
Match: EMLSAP00000007123 (pep:novel supercontig:LSalAtl2s:LSalAtl2s401:84241:84844:-1 gene:EMLSAG00000007123 transcript:EMLSAT00000007123 description:"maker-LSalAtl2s401-augustus-gene-0.14") HSP 1 Score: 44.2838 bits (103), Expect = 9.262e-7 Identity = 34/91 (37.36%), Postives = 46/91 (50.55%), Query Frame = 0 Query: 1 SLSEAQTV-LKAAAPANNVRDCFCQCSSLSFRDKNNRVNGNCRTT-FNGGQWCYITDEAARNGDCPDSNPSTR----FPGKKWSYFSCATP 85 +L+ AQ + LKA + A N C CQCS+ FRD GNC + G +WCY+ R C D+ S R ++ SY +CATP Sbjct: 13 ALTSAQDITLKAPSLAVN---CGCQCSNYIFRDLRGITQGNCNSADRTGAKWCYVD----RGHTCQDTRGSGRNDQFGRRRQISYEACATP 96
BLAST of EMLSAG00000001327 vs. L. salmonis peptides
Match: EMLSAP00000007122 (pep:novel supercontig:LSalAtl2s:LSalAtl2s401:64891:74089:-1 gene:EMLSAG00000007122 transcript:EMLSAT00000007122 description:"maker-LSalAtl2s401-augustus-gene-0.13") HSP 1 Score: 44.669 bits (104), Expect = 9.701e-7 Identity = 34/91 (37.36%), Postives = 46/91 (50.55%), Query Frame = 0 Query: 1 SLSEAQTV-LKAAAPANNVRDCFCQCSSLSFRDKNNRVNGNCRTT-FNGGQWCYITDEAARNGDCPDSNPSTRFPG----KKWSYFSCATP 85 +L+ AQ + LKA + A N C CQCS+ FRD GNC + G +WCY+ R C D+ S R ++ SY +CATP Sbjct: 111 ALTSAQDITLKAPSLAVN---CGCQCSNYIFRDLRGITQGNCNSADRTGAKWCYVD----RGHTCQDTRGSGRKDQFGRRRQISYEACATP 194
BLAST of EMLSAG00000001327 vs. nr
Match: gi|155966304|gb|ABU41105.1| (hypothetical protein [Lepeophtheirus salmonis]) HSP 1 Score: 74.3294 bits (181), Expect = 1.204e-14 Identity = 39/91 (42.86%), Postives = 55/91 (60.44%), Query Frame = 0 Query: 11 AAAPANNVRDCFCQCSSLSFRDKNNRVNGNCRTTFNGGQWCYITDEAARNGDCPDSNPSTRFPGKKWSYFSCAT--PSTRQCVLDAVRNGG 99 A AP N+ DC CQC +LSF D+ + GNCR+TFNG QWCY+ ++ + CPD STR+ GK +S +C T + +C+ + N G Sbjct: 23 APAPINSQADCQCQCIALSFYDEYGQQQGNCRSTFNGAQWCYVENDGYSS--CPDLKRSTRYRGKYYSNHACITLPAYSPECLGFVIYNEG 111
BLAST of EMLSAG00000001327 vs. Tigriopus kingsejongenis genes
Match: maker-scaffold82_size396747-snap-gene-2.41 (protein:Tk06844 transcript:maker-scaffold82_size396747-snap-gene-2.41-mRNA-1 annotation:"hypothetical protein") HSP 1 Score: 52.7582 bits (125), Expect = 2.138e-9 Identity = 25/71 (35.21%), Postives = 39/71 (54.93%), Query Frame = 0 Query: 21 CFCQCSSLSFRDKNNRVNGNCRTTFNGGQWCYITDEAARNGDCPDSNPSTRFPGKKWSYFSCATPSTRQCV 91 C CQC++ +F+ +N ++GNC + G WCY+ D C D S+R G WS+ +C TP + C+ Sbjct: 249 CDCQCNNYTFK-FDNTLHGNCLQPYKGALWCYVKDFGQST--CIDRLESSRVSGLFWSFQACGTPKYQDCL 316
BLAST of EMLSAG00000001327 vs. Tigriopus kingsejongenis genes
Match: maker-scaffold381_size190066-snap-gene-0.30 (protein:Tk01607 transcript:maker-scaffold381_size190066-snap-gene-0.30-mRNA-1 annotation:"hypothetical protein AN3340.2") HSP 1 Score: 49.6766 bits (117), Expect = 1.740e-8 Identity = 36/109 (33.03%), Postives = 56/109 (51.38%), Query Frame = 0 Query: 13 APANNVRDCFCQCSSLSFRDKNNRVNGNCRTTFNGGQ----WCYITDEAARNGDCPDSNPS-----TRFPGKKWSYFSCATP--STRQCVLDAVRNGGCFPQVFDTKIN 110 AP+N V C CQC + +++ +N+++GNC F+ Q WCY+ + G+C D S + +KWSY +C+TP ++ QC RN G F V + N Sbjct: 38 APSNQVS-CNCQCDNYTYKGGDNQIHGNC---FSADQTKAKWCYVDQYS---GECDDIQYSKNRRDSHGNLRKWSYQACSTPERASHQC-----RNNGSFNSVINNNSN 134
BLAST of EMLSAG00000001327 vs. Tigriopus kingsejongenis genes
Match: maker-scaffold381_size190066-snap-gene-0.32 (protein:Tk01608 transcript:maker-scaffold381_size190066-snap-gene-0.32-mRNA-1 annotation:"---NA---") HSP 1 Score: 47.3654 bits (111), Expect = 1.367e-7 Identity = 29/79 (36.71%), Postives = 44/79 (55.70%), Query Frame = 0 Query: 13 APANNVRDCFCQCSSLSFRDKNNRVNGNCRTT-FNGGQWCYITDEAARNGDCPD----SNPSTRFPG-KKWSYFSCATP 85 AP+N V C CQC + +++ +N+++GNC T G+WCY+ N DC D N F ++WSY +C+TP Sbjct: 40 APSNRVS-CNCQCDNYTYKGDDNQIHGNCFTADHTRGKWCYLDQ---YNNDCDDIQYSKNRRDSFGNLREWSYQACSTP 114
BLAST of EMLSAG00000001327 vs. Tigriopus kingsejongenis genes
Match: maker-scaffold381_size190066-snap-gene-0.31 (protein:Tk01605 transcript:maker-scaffold381_size190066-snap-gene-0.31-mRNA-1 annotation:"hypothetical protein") HSP 1 Score: 45.4394 bits (106), Expect = 6.003e-7 Identity = 34/101 (33.66%), Postives = 47/101 (46.53%), Query Frame = 0 Query: 7 TVLKAAAPANNVRDCFCQCSSLSFRDKNNRVNGNCRTT-FNGGQWCYITDEAARNGDCPDSNPS-TRFPG----KKWSYFSCATPSTRQCVLDAVRNGGCF 101 VLKA + N+ +C CQC ++RD RV GNCR+ WCYI A + C D S R ++WSY +C+TP+ + GG Sbjct: 37 IVLKAPS---NLINCGCQCDPYTWRDTLGRVQGNCRSADATKALWCYIPASAFTS--CADIRQSRNRLDNFGRPRRWSYEACSTPALTSPICLGFGQGGLL 132 The following BLAST results are available for this feature:
BLAST of EMLSAG00000001327 vs. GO
Analysis Date: 2014-04-02 (Blast vs. GO) Total hits: 0
BLAST of EMLSAG00000001327 vs. C. finmarchicus
Analysis Date: 2014-05-09 (TblastN vs C. finmarchicus TSA) Total hits: 25
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BLAST of EMLSAG00000001327 vs. L. salmonis peptides
Analysis Date: 2014-05-10 (Blastp vs. self) Total hits: 14
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BLAST of EMLSAG00000001327 vs. SwissProt
Analysis Date: 2017-02-10 (Blastp vs. SwissProt) Total hits: 0
BLAST of EMLSAG00000001327 vs. Select Arthropod Genomes
Analysis Date: 2017-02-20 (Blastp vs. Selected Arthropods) Total hits: 0
BLAST of EMLSAG00000001327 vs. nr
Analysis Date: 2017-02-20 (Blastp vs. NR (2/2017)) Total hits: 1
BLAST of EMLSAG00000001327 vs. Tigriopus kingsejongenis genes
Analysis Date: 2018-04-18 (Blastp vs. Tigriopus kingsejongensis proteins) Total hits: 4
Alignments
The following features are aligned
Analyses
This gene is derived from or has results from the following analyses
Properties
Cross References
External references for this gene
Relationships
The following mRNA feature(s) are a part of this gene:
Sequences
The following sequences are available for this feature:
gene from alignment at LSalAtl2s1223:219743..221280+ Legend: mRNA Hold the cursor over a type above to highlight its positions in the sequence below.>EMLSAG00000001327-684093 ID=EMLSAG00000001327-684093|Name=EMLSAG00000001327|organism=Lepeophtheirus salmonis|type=gene|length=1538bp|location=Sequence derived from alignment at LSalAtl2s1223:219743..221280+ (Lepeophtheirus salmonis)back to top Add to Basket
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