EMLSAG00000002557, EMLSAG00000002557-685323 (gene) Lepeophtheirus salmonis

Overview


Name	EMLSAG00000002557
Unique Name	EMLSAG00000002557-685323
Type	gene
Organism	Lepeophtheirus salmonis (salmon louse)

Associated RNAi Experiments

Nothing found

Homology

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BLAST of EMLSAG00000002557 vs. GO
Match: - (symbol:CIRBP "Cold-inducible RNA-binding protein" species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003730 "mRNA 3'-UTR binding" evidence=IDA] [GO:0005515 "protein binding" evidence=IPI] [GO:0005634 "nucleus" evidence=ISS;IDA] [GO:0005654 "nucleoplasm" evidence=IEA] [GO:0005737 "cytoplasm" evidence=ISS;IDA] [GO:0009409 "response to cold" evidence=IEA] [GO:0009411 "response to UV" evidence=IDA] [GO:0010494 "cytoplasmic stress granule" evidence=ISS] [GO:0030371 "translation repressor activity" evidence=ISS] [GO:0034063 "stress granule assembly" evidence=ISS] [GO:0044822 "poly(A) RNA binding" evidence=IDA] [GO:0045727 "positive regulation of translation" evidence=IDA] [GO:0048255 "mRNA stabilization" evidence=IDA] [GO:0070181 "SSU rRNA binding" evidence=IDA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0009411 GO:GO:0005654 GO:GO:0030371 GO:GO:0000166 GO:GO:0009409 Gene3D:3.30.70.330 GO:GO:0048255 GO:GO:0003730 GO:GO:0045727 GO:GO:0010494 GO:GO:0034063 eggNOG:COG0724 HOVERGEN:HBG107480 GO:GO:0070181 KO:K13195 CTD:1153 EMBL:D78134 EMBL:AF021336 EMBL:AC004258 EMBL:BC000403 EMBL:BC000901 RefSeq:NP_001271.1 UniGene:Hs.618145 UniGene:Hs.634522 PDB:1X5S PDBsum:1X5S ProteinModelPortal:Q14011 SMR:Q14011 BioGrid:107573 IntAct:Q14011 MINT:MINT-5004534 STRING:9606.ENSP00000322887 PhosphoSite:Q14011 DMDM:5921786 REPRODUCTION-2DPAGE:IPI00180954 PaxDb:Q14011 PRIDE:Q14011 DNASU:1153 Ensembl:ENST00000320936 Ensembl:ENST00000585630 Ensembl:ENST00000586472 Ensembl:ENST00000588030 Ensembl:ENST00000588090 Ensembl:ENST00000589660 GeneID:1153 KEGG:hsa:1153 UCSC:uc002lrr.4 GeneCards:GC19P001269 HGNC:HGNC:1982 MIM:602649 neXtProt:NX_Q14011 PharmGKB:PA26519 HOGENOM:HOG000276232 InParanoid:Q14011 OrthoDB:EOG780RPD PhylomeDB:Q14011 ChiTaRS:CIRBP EvolutionaryTrace:Q14011 GeneWiki:CIRBP GenomeRNAi:1153 NextBio:4788 PRO:PR:Q14011 ArrayExpress:Q14011 Bgee:Q14011 CleanEx:HS_CIRBP Genevestigator:Q14011 Uniprot:Q14011)

HSP 1 Score: 52.7582 bits (125), Expect = 3.689e-8
Identity = 35/98 (35.71%), Postives = 53/98 (54.08%), Query Frame = 0

Query:    1 MPSQEGTKLFVHGVRDTCPRSVLEDEFGKIGPVADVHITE-------KGXAFVTMMSAEDAEGAMRKLNGTTVHGQEVKVEIAHEGGRRGSRGGGYRG 91
            M S EG KLFV G+        LE  F K G +++V + +       +G  FVT  + +DA+ AM  +NG +V G++++V+ A  G    +R  GYRG
Sbjct:    1 MASDEG-KLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGRQIRVDQA--GKSSDNRSRGYRG 95

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BLAST of EMLSAG00000002557 vs. GO
Match: - (symbol:RBMY1B "RNA-binding motif protein, Y chromosome, family 1 member B" species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=NAS] [GO:0005515 "protein binding" evidence=IPI] [GO:0005634 "nucleus" evidence=TAS] [GO:0006397 "mRNA processing" evidence=IEA] [GO:0007283 "spermatogenesis" evidence=TAS] [GO:0008380 "RNA splicing" evidence=IDA] [GO:0008584 "male gonad development" evidence=IMP] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0008380 GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0007283 GO:GO:0003723 GO:GO:0008584 OrthoDB:EOG780RPD HOGENOM:HOG000276235 HOVERGEN:HBG063314 TreeFam:TF331833 InterPro:IPR012604 Pfam:PF08081 EMBL:AC010141 UniGene:Hs.380450 HPA:HPA001534 RefSeq:NP_001006121.1 UniGene:Hs.725744 ProteinModelPortal:A6NDE4 SMR:A6NDE4 STRING:9606.ENSP00000372484 PaxDb:A6NDE4 PRIDE:A6NDE4 Ensembl:ENST00000383020 GeneID:378948 KEGG:hsa:378948 UCSC:uc004fup.4 CTD:378948 GeneCards:GC0YP023674 HGNC:HGNC:23914 neXtProt:NX_A6NDE4 PharmGKB:PA134872137 eggNOG:NOG140744 InParanoid:A6NDE4 OMA:PRDYAYC GenomeRNAi:378948 NextBio:100871 PRO:PR:A6NDE4 Bgee:A6NDE4 CleanEx:HS_RBMY1B Genevestigator:A6NDE4 Uniprot:A6NDE4)

HSP 1 Score: 55.0694 bits (131), Expect = 3.729e-8
Identity = 30/86 (34.88%), Postives = 49/86 (56.98%), Query Frame = 0

Query:    8 KLFVHGVRDTCPRSVLEDEFGKIGPVADVHITE------KGXAFVTMMSAEDAEGAMRKLNGTTVHGQEVKVEIA-----HEGGRR 82
            KLF+ G+       +L+  FGK GP+++V + +      +G AF+T  +  DA+ A + +NG ++HG+ +KVE A       GGRR
Sbjct:    9 KLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDRTSKSRGFAFITFENPADAKNAAKDMNGKSLHGKAIKVEQAKKPSFQSGGRR 94

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BLAST of EMLSAG00000002557 vs. GO
Match: - (symbol:RBMY1E "RNA-binding motif protein, Y chromosome, family 1 member E" species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 InterPro:IPR012604 Pfam:PF08081 EMBL:AC007322 HGNC:HGNC:23916 ProteinModelPortal:J3KPK3 SMR:J3KPK3 PRIDE:J3KPK3 Ensembl:ENST00000382658 UCSC:uc010nxd.3 NextBio:35535153 ArrayExpress:J3KPK3 Uniprot:J3KPK3)

HSP 1 Score: 55.0694 bits (131), Expect = 3.802e-8
Identity = 30/86 (34.88%), Postives = 49/86 (56.98%), Query Frame = 0

Query:    8 KLFVHGVRDTCPRSVLEDEFGKIGPVADVHITE------KGXAFVTMMSAEDAEGAMRKLNGTTVHGQEVKVEIA-----HEGGRR 82
            KLF+ G+       +L+  FGK GP+++V + +      +G AF+T  +  DA+ A + +NG ++HG+ +KVE A       GGRR
Sbjct:    9 KLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDRTSKSRGFAFITFENPADAKNAAKDMNGKSLHGKAIKVEQAKKPSFQSGGRR 94

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BLAST of EMLSAG00000002557 vs. GO
Match: - (symbol:RBMY1D "Uncharacterized protein" species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 HOVERGEN:HBG063314 InterPro:IPR012604 Pfam:PF08081 UniGene:Hs.380450 EMBL:AC007322 GeneID:378949 KEGG:hsa:378949 CTD:378949 HGNC:HGNC:23915 EMBL:BC136862 EMBL:BC144459 RefSeq:XP_005262642.1 Ensembl:ENST00000418956 UCSC:uc010nxb.2 NextBio:35481418 Uniprot:B7ZMD9)

HSP 1 Score: 55.0694 bits (131), Expect = 3.802e-8
Identity = 30/86 (34.88%), Postives = 49/86 (56.98%), Query Frame = 0

Query:    8 KLFVHGVRDTCPRSVLEDEFGKIGPVADVHITE------KGXAFVTMMSAEDAEGAMRKLNGTTVHGQEVKVEIA-----HEGGRR 82
            KLF+ G+       +L+  FGK GP+++V + +      +G AF+T  +  DA+ A + +NG ++HG+ +KVE A       GGRR
Sbjct:    9 KLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDRTSKSRGFAFITFENPADAKNAAKDMNGKSLHGKAIKVEQAKKPSFQSGGRR 94

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BLAST of EMLSAG00000002557 vs. GO
Match: - (symbol:RBMY1E "RNA-binding motif protein, Y chromosome, family 1 member E" species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0008380 GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723 OrthoDB:EOG780RPD HOGENOM:HOG000276235 HOVERGEN:HBG063314 TreeFam:TF331833 InterPro:IPR012604 Pfam:PF08081 HPA:HPA001534 UniGene:Hs.725744 EMBL:AC007322 RefSeq:NP_001006118.2 ProteinModelPortal:A6NEQ0 SMR:A6NEQ0 STRING:9606.ENSP00000372104 PhosphoSite:A6NEQ0 PRIDE:A6NEQ0 DNASU:378950 Ensembl:ENST00000382659 GeneID:378950 KEGG:hsa:378950 UCSC:uc004fux.4 CTD:378950 GeneCards:GC0YM024027 HGNC:HGNC:23916 neXtProt:NX_A6NEQ0 PharmGKB:PA134905273 OMA:PYCDREH GenomeRNAi:378950 NextBio:100879 PRO:PR:A6NEQ0 ArrayExpress:A6NEQ0 Bgee:A6NEQ0 Genevestigator:A6NEQ0 Uniprot:A6NEQ0)

HSP 1 Score: 55.0694 bits (131), Expect = 4.119e-8
Identity = 30/86 (34.88%), Postives = 49/86 (56.98%), Query Frame = 0

Query:    8 KLFVHGVRDTCPRSVLEDEFGKIGPVADVHITE------KGXAFVTMMSAEDAEGAMRKLNGTTVHGQEVKVEIA-----HEGGRR 82
            KLF+ G+       +L+  FGK GP+++V + +      +G AF+T  +  DA+ A + +NG ++HG+ +KVE A       GGRR
Sbjct:    9 KLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDRTSKSRGFAFITFENPADAKNAAKDMNGKSLHGKAIKVEQAKKPSFQSGGRR 94

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BLAST of EMLSAG00000002557 vs. C. finmarchicus
Match: gi|592779045|gb|GAXK01175523.1| (TSA: Calanus finmarchicus comp2654_c1_seq1 transcribed RNA sequence)

HSP 1 Score: 74.7146 bits (182), Expect = 4.421e-16
Identity = 37/74 (50.00%), Postives = 50/74 (67.57%), Query Frame = 0

Query:    3 SQEGTKLFVHGVRDTCPRSVLEDEFGKIGPVADVHITEKGXAFVTMMSAEDAEGAMRKLNGTTVHGQEVKVEIA 76
            S+EG KLFV+GV    P+  L+ EF + G V D + + KG AF+T  + E+A+ A   LNGTTV GQE+KV+IA
Sbjct:  286 SEEGCKLFVYGVATQTPKEDLQTEFERFGSVTDAYNSGKGYAFITYETKEEADQAKEMLNGTTVCGQEIKVDIA 507

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BLAST of EMLSAG00000002557 vs. C. finmarchicus
Match: gi|592779046|gb|GAXK01175522.1| (TSA: Calanus finmarchicus comp2654_c0_seq1 transcribed RNA sequence)

HSP 1 Score: 74.7146 bits (182), Expect = 4.659e-16
Identity = 37/74 (50.00%), Postives = 50/74 (67.57%), Query Frame = 0

Query:    3 SQEGTKLFVHGVRDTCPRSVLEDEFGKIGPVADVHITEKGXAFVTMMSAEDAEGAMRKLNGTTVHGQEVKVEIA 76
            S+EG KLFV+GV    P+  L+ EF + G V D + + KG AF+T  + E+A+ A   LNGTTV GQE+KV+IA
Sbjct:  148 SEEGCKLFVYGVATQTPKEDLQTEFERFGSVTDAYNSGKGYAFITYETKEEADQAKEMLNGTTVCGQEIKVDIA 369

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BLAST of EMLSAG00000002557 vs. C. finmarchicus
Match: gi|592766328|gb|GAXK01188240.1| (TSA: Calanus finmarchicus comp10430_c0_seq1 transcribed RNA sequence)

HSP 1 Score: 72.4034 bits (176), Expect = 2.506e-15
Identity = 36/75 (48.00%), Postives = 48/75 (64.00%), Query Frame = 0

Query:    3 SQEGTKLFVHGVRDTCPRSVLEDEFGKIGPVADVHITEKGXAFVTMMSAEDAEGAMRKLNGTTVHGQEVKVEIAH 77
            ++EG KLFV+GV +    S L+ EF K G V D + T KG AFVT  + +DA  A  +LNG T+ GQ+VKV +A 
Sbjct:  166 AEEGCKLFVYGVNEGTSNSELQTEFEKFGTVTDTYNTGKGYAFVTFDNKDDASEATEQLNGATILGQQVKVNVAR 390

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BLAST of EMLSAG00000002557 vs. C. finmarchicus
Match: gi|592821267|gb|GAXK01133301.1| (TSA: Calanus finmarchicus comp27914_c0_seq1 transcribed RNA sequence)

HSP 1 Score: 67.3958 bits (163), Expect = 5.072e-13
Identity = 35/72 (48.61%), Postives = 45/72 (62.50%), Query Frame = 0

Query:    8 KLFVHGVRDTCPRSVLEDEFGKIGPVADVHITEK--GXAFVTMMSAEDAEGAMRKLNGTTVHGQEVKVEIAH 77
            K+++ G+RD   R  LED F K GPV DV +  +  G AFV M  A DAE A R L+GT V G  VKVE+++
Sbjct:  442 KIYIGGLRDDANRYDLEDAFAKYGPVRDVWVARRPPGFAFVEMEDARDAEDAARGLDGTRVCGSRVKVEMSN 657

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BLAST of EMLSAG00000002557 vs. C. finmarchicus
Match: gi|592788500|gb|GAXK01166068.1| (TSA: Calanus finmarchicus comp99_c0_seq1 transcribed RNA sequence)

HSP 1 Score: 67.0106 bits (162), Expect = 5.833e-13
Identity = 34/75 (45.33%), Postives = 48/75 (64.00%), Query Frame = 0

Query:    3 SQEGTKLFVHGVRDTCPRSVLEDEFGKIGPVADVHITEKGXAFVTMMSAEDAEGAMRKLNGTTVHGQEVKVEIAH 77
            +++G KLF++GV        L+ EF K G V DV+ T KG AFVT    EDAE A ++++G TV+GQ++KV  A 
Sbjct:   97 AEQGCKLFIYGVDQNMANGDLQAEFEKFGMVTDVYNTGKGFAFVTFDRKEDAETATQQMDGQTVNGQQLKVNEAR 321

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BLAST of EMLSAG00000002557 vs. C. finmarchicus
Match: gi|592788498|gb|GAXK01166070.1| (TSA: Calanus finmarchicus comp99_c2_seq1 transcribed RNA sequence)

HSP 1 Score: 67.0106 bits (162), Expect = 5.920e-13
Identity = 34/75 (45.33%), Postives = 48/75 (64.00%), Query Frame = 0

Query:    3 SQEGTKLFVHGVRDTCPRSVLEDEFGKIGPVADVHITEKGXAFVTMMSAEDAEGAMRKLNGTTVHGQEVKVEIAH 77
            +++G KLF++GV        L+ EF K G V DV+ T KG AFVT    EDAE A ++++G TV+GQ++KV  A 
Sbjct:  631 AEQGCKLFIYGVDQNMANGDLQAEFEKFGMVTDVYNTGKGFAFVTFDRKEDAETATQEMDGQTVNGQQIKVNEAR 855

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BLAST of EMLSAG00000002557 vs. C. finmarchicus
Match: gi|592785473|gb|GAXK01169095.1| (TSA: Calanus finmarchicus comp1623_c1_seq1 transcribed RNA sequence)

HSP 1 Score: 65.4698 bits (158), Expect = 8.084e-13
Identity = 35/75 (46.67%), Postives = 45/75 (60.00%), Query Frame = 0

Query:    3 SQEGTKLFVHGVRDTCPRSVLEDEFGKIGPVADVHITEKGXAFVTMMSAEDAEGAMRKLNGTTVHGQEVKVEIAH 77
            ++EG KLFV+GV +    S L+ EF K G V D + T KG AFVT    + A  A  KLNG  V GQ++KV +A 
Sbjct:  405 AEEGCKLFVYGVNEGTSNSELQAEFEKFGTVTDTYNTGKGYAFVTFEDKDAAAEASDKLNGQEVLGQQLKVNVAR 629

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BLAST of EMLSAG00000002557 vs. C. finmarchicus
Match: gi|592786330|gb|GAXK01168238.1| (TSA: Calanus finmarchicus comp862_c1_seq1 transcribed RNA sequence)

HSP 1 Score: 65.0846 bits (157), Expect = 8.217e-13
Identity = 34/74 (45.95%), Postives = 46/74 (62.16%), Query Frame = 0

Query:    3 SQEGTKLFVHGVRDTCPRSVLEDEFGKIGPVADVHITEKGXAFVTMMSAEDAEGAMRKLNGTTVHGQEVKVEIA 76
            ++EG KLFV+GV +    S L+++F K G V D + T KG AFVT  + E A  A  +LNG  V GQ +KV +A
Sbjct:  390 AEEGCKLFVYGVNEGTSNSELQEQFEKFGTVTDTYNTGKGYAFVTYDNKESAAEASERLNGQEVLGQVLKVNVA 611

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BLAST of EMLSAG00000002557 vs. C. finmarchicus
Match: gi|592785476|gb|GAXK01169092.1| (TSA: Calanus finmarchicus comp1501_c0_seq1 transcribed RNA sequence)

HSP 1 Score: 65.0846 bits (157), Expect = 6.005e-12
Identity = 31/75 (41.33%), Postives = 47/75 (62.67%), Query Frame = 0

Query:    3 SQEGTKLFVHGVRDTCPRSVLEDEFGKIGPVADVHITEKGXAFVTMMSAEDAEGAMRKLNGTTVHGQEVKVEIAH 77
            +++G KLF++G+        L+ EF K G V DV+ T KG AFVT    EDAE A ++++G  ++GQ++KV  A 
Sbjct: 1121 AEQGCKLFIYGIDQNMANGDLQAEFEKFGMVTDVYNTGKGFAFVTFDRKEDAESATQEMDGANLNGQQIKVNEAR 1345

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BLAST of EMLSAG00000002557 vs. C. finmarchicus
Match: gi|592785791|gb|GAXK01168777.1| (TSA: Calanus finmarchicus comp522_c1_seq1 transcribed RNA sequence)

HSP 1 Score: 64.3142 bits (155), Expect = 1.988e-11
Identity = 34/74 (45.95%), Postives = 45/74 (60.81%), Query Frame = 0

Query:    3 SQEGTKLFVHGVRDTCPRSVLEDEFGKIGPVADVHITEKGXAFVTMMSAEDAEGAMRKLNGTTVHGQEVKVEIA 76
            ++EG KLFV+GV +      L++EF K G V D + T KG AFVT  + E A  A  +LNG  V GQ +KV +A
Sbjct: 1649 AEEGCKLFVYGVNEGTSNHELQEEFEKFGTVTDTYNTGKGYAFVTFDNKESASEATERLNGQEVLGQVLKVNVA 1870

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BLAST of EMLSAG00000002557 vs. L. salmonis peptides
Match: EMLSAP00000002557 (pep:novel supercontig:LSalAtl2s:LSalAtl2s1510:50770:51213:1 gene:EMLSAG00000002557 transcript:EMLSAT00000002557 description:"augustus_masked-LSalAtl2s1510-processed-gene-0.5")

HSP 1 Score: 281.182 bits (718), Expect = 7.308e-98
Identity = 147/147 (100.00%), Postives = 147/147 (100.00%), Query Frame = 0

Query:    1 MPSQEGTKLFVHGVRDTCPRSVLEDEFGKIGPVADVHITEKGXAFVTMMSAEDAEGAMRKLNGTTVHGQEVKVEIAHEGGRRGSRGGGYRGRFGGNDRGRFGGGGGNRYNDNNDRRSYGSGGGGGGYSRXGGDRGDRGDRGGDWGGY 147
            MPSQEGTKLFVHGVRDTCPRSVLEDEFGKIGPVADVHITEKGXAFVTMMSAEDAEGAMRKLNGTTVHGQEVKVEIAHEGGRRGSRGGGYRGRFGGNDRGRFGGGGGNRYNDNNDRRSYGSGGGGGGYSRXGGDRGDRGDRGGDWGGY
Sbjct:    1 MPSQEGTKLFVHGVRDTCPRSVLEDEFGKIGPVADVHITEKGXAFVTMMSAEDAEGAMRKLNGTTVHGQEVKVEIAHEGGRRGSRGGGYRGRFGGNDRGRFGGGGGNRYNDNNDRRSYGSGGGGGGYSRXGGDRGDRGDRGGDWGGY 147

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BLAST of EMLSAG00000002557 vs. L. salmonis peptides
Match: EMLSAP00000007347 (pep:novel supercontig:LSalAtl2s:LSalAtl2s4162:3600:4079:1 gene:EMLSAG00000007347 transcript:EMLSAT00000007347 description:"augustus_masked-LSalAtl2s4162-processed-gene-0.0")

HSP 1 Score: 150.599 bits (379), Expect = 1.835e-46
Identity = 95/121 (78.51%), Postives = 103/121 (85.12%), Query Frame = 0

Query:    1 MPSQEGTKLFVHGVRDTCPRSVLEDEFGKIGPVADVHITEKGXAFVTMMSAEDAEGAMRKLNGTTVHGQEVKVEIAHEGGRRGSRGGGYRGRFGGNDRGRFGGGGGNRYNDNN---DRRSY 118
            MPS+  TKLFVHGVRDTCPRSVLEDEF KIGPV DV+ITEKG AFVTM ++EDA+ A RKLNGTTV GQE+KVEIAH   RRGSRGGGYRGRFGGNDRGRF GGG  RY+DNN   +RRSY
Sbjct:    1 MPSEGETKLFVHGVRDTCPRSVLEDEFSKIGPVTDVYITEKGYAFVTMTNSEDADDAARKLNGTTVDGQELKVEIAHGRSRRGSRGGGYRGRFGGNDRGRFEGGG--RYHDNNERSERRSY 119

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BLAST of EMLSAG00000002557 vs. L. salmonis peptides
Match: EMLSAP00000002556 (pep:novel supercontig:LSalAtl2s:LSalAtl2s1510:24535:24822:1 gene:EMLSAG00000002556 transcript:EMLSAT00000002556 description:"augustus_masked-LSalAtl2s1510-processed-gene-0.4")

HSP 1 Score: 129.798 bits (325), Expect = 4.278e-39
Identity = 72/94 (76.60%), Postives = 79/94 (84.04%), Query Frame = 0

Query:    1 MPSQEGTKLFVHGVRDTCPRSVLEDEFGKIGPVADVHITEKGXAFVTMMSAEDAEGAMRKLNGTTVHGQEVKVEIAHEGGRRGSRGGGYRGRFG 94
            MPS+  TKLFVHGVRDTCPRSVLEDEF KIGPV DV+ITEKG AFVTM ++EDA+ A RKLNGTTV GQE+KVEIA   GRRGS GGG  GR+G
Sbjct:    1 MPSEGETKLFVHGVRDTCPRSVLEDEFSKIGPVTDVYITEKGYAFVTMTNSEDADDAARKLNGTTVDGQELKVEIAXGRGRRGSXGGGXXGRYG 94

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BLAST of EMLSAG00000002557 vs. L. salmonis peptides
Match: EMLSAP00000000098 (pep:novel supercontig:LSalAtl2s:LSalAtl2s1017:34509:34836:-1 gene:EMLSAG00000000098 transcript:EMLSAT00000000098 description:"snap_masked-LSalAtl2s1017-processed-gene-0.1")

HSP 1 Score: 82.0333 bits (201), Expect = 6.574e-21
Identity = 41/80 (51.25%), Postives = 51/80 (63.75%), Query Frame = 0

Query:   13 GVRDTCPRSVLEDEFGKIGPVADVHITEKGXAFVTMMSAEDAEGAMRKLNGTTVHGQEVKVEIAHEGGRRGSRGGGYRGR 92
             VRDT P SVLED+     PVA++HI EK   FVT+M++EDAE AM KL  T V GQEV+++I      R  R G Y+ R
Sbjct:    2 SVRDTWPLSVLEDDLSN-NPVANIHIIEKDNVFVTLMNSEDAESAMYKLKSTPVLGQEVEMDI----FLRARRRGKYKSR 76

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BLAST of EMLSAG00000002557 vs. L. salmonis peptides
Match: EMLSAP00000005955 (pep:novel supercontig:LSalAtl2s:LSalAtl2s321:630816:639965:-1 gene:EMLSAG00000005955 transcript:EMLSAT00000005955 description:"snap_masked-LSalAtl2s321-processed-gene-6.7")

HSP 1 Score: 71.633 bits (174), Expect = 3.585e-17
Identity = 34/49 (69.39%), Postives = 39/49 (79.59%), Query Frame = 0

Query:   29 KIGPVADVHITEKGXAFVTMMSAEDAEGAMRKLNGTTVHGQEVKVEIAH 77
            KIGPV DVHI EK   F TM +AED EG MR+LNGTT+ GQ+VK+EIAH
Sbjct:   13 KIGPVEDVHIKEKDQVFETMRNAEDTEGFMRRLNGTTIPGQDVKMEIAH 61

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BLAST of EMLSAG00000002557 vs. L. salmonis peptides
Match: EMLSAP00000007190 (pep:novel supercontig:LSalAtl2s:LSalAtl2s404:347783:355385:1 gene:EMLSAG00000007190 transcript:EMLSAT00000007190 description:"maker-LSalAtl2s404-augustus-gene-3.38")

HSP 1 Score: 47.7506 bits (112), Expect = 2.729e-7
Identity = 26/76 (34.21%), Postives = 42/76 (55.26%), Query Frame = 0

Query:    8 KLFVHGVRDTCPRSVLEDEFGKIGPVADVHITEK--GXAFVTMMSAEDAEGAMRKLNGTTVHGQEVKVEIAHEGGR 81
            K+++  + ++  +  LED F K GP+ +V +     G AFV      DAE ++R L+G  V GQ V+VE++    R
Sbjct:   12 KVYIGNLGNSASKYELEDAFSKYGPLKNVWVARNPPGFAFVEFEDPRDAEDSVRGLDGXRVCGQRVRVEMSSGQSR 87

[Close]

BLAST of EMLSAG00000002557 vs. SwissProt
Match: gi|952543496|sp|W8E7I1.2|RBM3_CAPHI (RecName: Full=RNA-binding protein 3; AltName: Full=RNA-binding motif protein 3)

HSP 1 Score: 62.003 bits (149), Expect = 1.211e-11
Identity = 35/96 (36.46%), Postives = 55/96 (57.29%), Query Frame = 0

Query:    1 MPSQEGTKLFVHGVRDTCPRSVLEDEFGKIGPVADVHITE-------KGXAFVTMMSAEDAEGAMRKLNGTTVHGQEVKVEIAHEGGRRGSRGGGY 89
            M S+EG KLFV G+        LED F   GP+++V + +       +G  F+T  + E A  AMR +NG ++ G++++V+ A +   RGSRGG +
Sbjct:    1 MSSEEG-KLFVGGLNFNTDERALEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHASNAMRAMNGESLDGRQIRVDHAGKSA-RGSRGGAF 94

[Close]

BLAST of EMLSAG00000002557 vs. SwissProt
Match: gi|284022113|sp|Q925G0.2|RBM3_RAT (RecName: Full=RNA-binding protein 3; AltName: Full=RNA-binding motif protein 3)

HSP 1 Score: 60.077 bits (144), Expect = 5.012e-11
Identity = 38/107 (35.51%), Postives = 59/107 (55.14%), Query Frame = 0

Query:    1 MPSQEGTKLFVHGVRDTCPRSVLEDEFGKIGPVADVHITE-------KGXAFVTMMSAEDAEGAMRKLNGTTVHGQEVKVEIAHEGGRRGSRGGGYRGRFGGNDRGR 100
            M S+EG KLFV G+        LED F   GP+++V + +       +G  F+T  + E A   MR +NG ++ G++++V+ A +   RG+RGG     FG + RGR
Sbjct:    1 MSSEEG-KLFVGGLNFNTDEQALEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHASDVMRAMNGESLDGRQIRVDHAGKSA-RGTRGGA----FGAHGRGR 101

[Close]

BLAST of EMLSAG00000002557 vs. SwissProt
Match: gi|1710620|sp|P98179.1|RBM3_HUMAN (RecName: Full=RNA-binding protein 3; AltName: Full=RNA-binding motif protein 3; AltName: Full=RNPL)

HSP 1 Score: 55.8398 bits (133), Expect = 1.863e-9
Identity = 30/88 (34.09%), Postives = 49/88 (55.68%), Query Frame = 0

Query:    1 MPSQEGTKLFVHGVRDTCPRSVLEDEFGKIGPVADVHITE-------KGXAFVTMMSAEDAEGAMRKLNGTTVHGQEVKVEIAHEGGR 81
            M S+EG KLFV G+        LED F   GP+++V + +       +G  F+T  + E A  AMR +NG ++ G++++V+ A +  R
Sbjct:    1 MSSEEG-KLFVGGLNFNTDEQALEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHASVAMRAMNGESLDGRQIRVDHAGKSAR 87

[Close]

BLAST of EMLSAG00000002557 vs. SwissProt
Match: gi|166199747|sp|Q15415.2|RBY1F_HUMAN (RecName: Full=RNA-binding motif protein, Y chromosome, family 1 member F/J; AltName: Full=Y chromosome RNA recognition motif 2)

HSP 1 Score: 57.7658 bits (138), Expect = 1.881e-9
Identity = 37/112 (33.04%), Postives = 57/112 (50.89%), Query Frame = 0

Query:    8 KLFVHGVRDTCPRSVLEDEFGKIGPVADVHITE------KGXAFVTMMSAEDAEGAMRKLNGTTVHGQEVKVEIA-----HEGGRRGSRGGGYRGRFGGNDRGRFGGGGGNR 108
            KLF+ G+       +L+  FGK GP+++V + +      +G AF+T  +  DA+ A + +NGT++HG+ +KVE A       GGRR            G+ R   G  GG R
Sbjct:    9 KLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDRTSKSRGFAFITFENPADAKNAAKDMNGTSLHGKAIKVEQAKKPSFQSGGRRRPPASSRNRSPSGSLRSARGSSGGTR 120

[Close]

BLAST of EMLSAG00000002557 vs. SwissProt
Match: gi|6093936|sp|O89086.1|RBM3_MOUSE (RecName: Full=RNA-binding protein 3; AltName: Full=RNA-binding motif protein 3)

HSP 1 Score: 55.4546 bits (132), Expect = 2.507e-9
Identity = 29/83 (34.94%), Postives = 47/83 (56.63%), Query Frame = 0

Query:    1 MPSQEGTKLFVHGVRDTCPRSVLEDEFGKIGPVADVHITE-------KGXAFVTMMSAEDAEGAMRKLNGTTVHGQEVKVEIA 76
            M S+EG KLFV G+        LED F   GP+++V + +       +G  F+T  + E A  AMR +NG ++ G++++V+ A
Sbjct:    1 MSSEEG-KLFVGGLNFNTDEQALEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHASDAMRAMNGESLDGRQIRVDHA 82

[Close]

BLAST of EMLSAG00000002557 vs. SwissProt
Match: gi|378522970|sp|P0DJD4.1|RBY1C_HUMAN (RecName: Full=RNA-binding motif protein, Y chromosome, family 1 member C)

HSP 1 Score: 55.4546 bits (132), Expect = 1.503e-8
Identity = 30/86 (34.88%), Postives = 50/86 (58.14%), Query Frame = 0

Query:    8 KLFVHGVRDTCPRSVLEDEFGKIGPVADVHITE------KGXAFVTMMSAEDAEGAMRKLNGTTVHGQEVKVEIAHE-----GGRR 82
            KLF+ G+       +L+  FGK GP+++V + +      +G AF+T  +  DA+ A + +NG ++HG+ +KVE A +     GGRR
Sbjct:    9 KLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDRTSKSRGFAFITFENPADAKNAAKDMNGKSLHGKAIKVEQAQKPSFQSGGRR 94

[Close]

BLAST of EMLSAG00000002557 vs. SwissProt
Match: gi|190360159|sp|A6NDE4.2|RBY1B_HUMAN (RecName: Full=RNA-binding motif protein, Y chromosome, family 1 member B)

HSP 1 Score: 55.0694 bits (131), Expect = 1.805e-8
Identity = 30/86 (34.88%), Postives = 49/86 (56.98%), Query Frame = 0

Query:    8 KLFVHGVRDTCPRSVLEDEFGKIGPVADVHITE------KGXAFVTMMSAEDAEGAMRKLNGTTVHGQEVKVEIA-----HEGGRR 82
            KLF+ G+       +L+  FGK GP+++V + +      +G AF+T  +  DA+ A + +NG ++HG+ +KVE A       GGRR
Sbjct:    9 KLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDRTSKSRGFAFITFENPADAKNAAKDMNGKSLHGKAIKVEQAKKPSFQSGGRR 94

[Close]

BLAST of EMLSAG00000002557 vs. SwissProt
Match: gi|190360154|sp|A6NEQ0.1|RBY1E_HUMAN (RecName: Full=RNA-binding motif protein, Y chromosome, family 1 member E)

HSP 1 Score: 55.0694 bits (131), Expect = 2.006e-8
Identity = 30/86 (34.88%), Postives = 49/86 (56.98%), Query Frame = 0

Query:    8 KLFVHGVRDTCPRSVLEDEFGKIGPVADVHITE------KGXAFVTMMSAEDAEGAMRKLNGTTVHGQEVKVEIA-----HEGGRR 82
            KLF+ G+       +L+  FGK GP+++V + +      +G AF+T  +  DA+ A + +NG ++HG+ +KVE A       GGRR
Sbjct:    9 KLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDRTSKSRGFAFITFENPADAKNAAKDMNGKSLHGKAIKVEQAKKPSFQSGGRR 94

[Close]

BLAST of EMLSAG00000002557 vs. SwissProt
Match: gi|190360153|sp|P0C7P1.1|RBY1D_HUMAN (RecName: Full=RNA-binding motif protein, Y chromosome, family 1 member D)

HSP 1 Score: 55.0694 bits (131), Expect = 2.025e-8
Identity = 30/86 (34.88%), Postives = 49/86 (56.98%), Query Frame = 0

Query:    8 KLFVHGVRDTCPRSVLEDEFGKIGPVADVHITE------KGXAFVTMMSAEDAEGAMRKLNGTTVHGQEVKVEIA-----HEGGRR 82
            KLF+ G+       +L+  FGK GP+++V + +      +G AF+T  +  DA+ A + +NG ++HG+ +KVE A       GGRR
Sbjct:    9 KLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDRTSKSRGFAFITFENPADAKNAAKDMNGKSLHGKAIKVEQAKKPSFQSGGRR 94

[Close]

BLAST of EMLSAG00000002557 vs. SwissProt
Match: gi|46395643|sp|P60826.1|CIRBP_CRIGR (RecName: Full=Cold-inducible RNA-binding protein; AltName: Full=A18 hnRNP; AltName: Full=Glycine-rich RNA-binding protein CIRP >gi|46397383|sp|P60825.1|CIRBP_RAT RecName: Full=Cold-inducible RNA-binding protein; AltName: Full=A18 hnRNP; AltName: Full=Glycine-rich RNA-binding protein CIRP >gi|46397384|sp|P60824.1|CIRBP_MOUSE RecName: Full=Cold-inducible RNA-binding protein; AltName: Full=A18 hnRNP; AltName: Full=Glycine-rich RNA-binding protein CIRP)

HSP 1 Score: 53.5286 bits (127), Expect = 2.030e-8
Identity = 35/98 (35.71%), Postives = 53/98 (54.08%), Query Frame = 0

Query:    1 MPSQEGTKLFVHGVRDTCPRSVLEDEFGKIGPVADVHITE-------KGXAFVTMMSAEDAEGAMRKLNGTTVHGQEVKVEIAHEGGRRGSRGGGYRG 91
            M S EG KLFV G+        LE  F K G +++V + +       +G  FVT  + +DA+ AM  +NG +V G++++V+ A  G    +R  GYRG
Sbjct:    1 MASDEG-KLFVGGLSFDTNEQALEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGRQIRVDQA--GKSSDNRSRGYRG 95

[Close]

BLAST of EMLSAG00000002557 vs. Select Arthropod Genomes
Match: gb|KPM03387.1| (RNA-binding protein-like protein 3 [Sarcoptes scabiei])

HSP 1 Score: 53.1434 bits (126), Expect = 4.554e-9
Identity = 31/82 (37.80%), Postives = 49/82 (59.76%), Query Frame = 0

Query:    7 TKLFVHGVRDTCPRSVLEDEFGKIGPVADVHIT--EKGXAFVTMMSAEDAEGAMRKLNGTTVHGQEVKVEIAHEGGRRGSRG 86
             K++V  ++D C +S +E+ F K GP+ +V +     G AFV    + DAE ++R L+GT + G  V+VE++H   RRG R 
Sbjct:   12 CKVYVGNLQDNCLKSDVENAFSKFGPLKNVWVARNPPGFAFVEFEDSRDAEDSVRALDGTRIGGNRVRVEMSHGRSRRGGRR 93

[Close]

BLAST of EMLSAG00000002557 vs. Select Arthropod Genomes
Match: gb|KFM68213.1| (Serine/arginine-rich splicing factor 12, partial [Stegodyphus mimosarum])

HSP 1 Score: 50.0618 bits (118), Expect = 1.994e-7
Identity = 26/79 (32.91%), Postives = 39/79 (49.37%), Query Frame = 0

Query:    6 GTKLFVHGVRDTCPRSVLEDEFGKIGPVADVHIT-------EKGXAFVTMMSAEDAEGAMRKLNGTTVHGQEVKVEIAH 77
             + LFV  V D+     L   FGK GP+ DV+I         +G A+V      DAE A+ +L+     G+E+++E A 
Sbjct:    9 NSSLFVRNVPDSARPEELRRLFGKYGPITDVYIPLDYYSRRPRGFAYVQFEDIRDAEEALNELDRIRFFGRELEIEFAQ 87

[Close]

BLAST of EMLSAG00000002557 vs. Select Arthropod Genomes
Match: EAA43387.4 (AGAP009142-PA, partial [Anopheles gambiae str. PEST])

HSP 1 Score: 50.0618 bits (118), Expect = 2.152e-7
Identity = 31/89 (34.83%), Postives = 47/89 (52.81%), Query Frame = 0

Query:    1 MPSQEGTKLFVHGVRDTCPRSVLEDEFGKIGPVADVHIT--EKGXAFVTMMSAEDAEGAMRKLNGTTVHGQEVKVEIAHEGGRRGSRGG 87
            M   +GT+++V  + D   +  LE EF K G +  V +     G AF+   + E+AE A   LNG  + G +++VEI+   GRR  RG 
Sbjct:    4 MGDSKGTRVYVGNLTDKVKKEDLEGEFTKYGKLNSVWVAFNPPGFAFIEFENKEEAETACDNLNGQDILGSKLRVEISK--GRRNPRGA 90

[Close]

BLAST of EMLSAG00000002557 vs. Select Arthropod Genomes
Match: AGB92853.1 (repressor splicing factor 1, isoform B [Drosophila melanogaster])

HSP 1 Score: 49.2914 bits (116), Expect = 4.226e-7
Identity = 29/78 (37.18%), Postives = 42/78 (53.85%), Query Frame = 0

Query:    1 MPSQEGTKLFVHGVRDTCPRSVLEDEFGKIGPVADVHIT--EKGXAFVTMMSAEDAEGAMRKLNGTTVHGQEVKVEIA 76
            M  Q GT+++V  + D   +  LE EF K G +  V I     G AFV     +DAE A   LNG+ + G +++VEI+
Sbjct:    4 MGDQRGTRVYVGNLTDKVKKDDLEGEFTKYGKLNSVWIAFNPPGFAFVEFEHRDDAEKACDILNGSELLGSQLRVEIS 81

[Close]

BLAST of EMLSAG00000002557 vs. Select Arthropod Genomes
Match: AAF52890.1 (repressor splicing factor 1, isoform A [Drosophila melanogaster])

HSP 1 Score: 49.2914 bits (116), Expect = 4.226e-7
Identity = 29/78 (37.18%), Postives = 42/78 (53.85%), Query Frame = 0

Query:    1 MPSQEGTKLFVHGVRDTCPRSVLEDEFGKIGPVADVHIT--EKGXAFVTMMSAEDAEGAMRKLNGTTVHGQEVKVEIA 76
            M  Q GT+++V  + D   +  LE EF K G +  V I     G AFV     +DAE A   LNG+ + G +++VEI+
Sbjct:    4 MGDQRGTRVYVGNLTDKVKKDDLEGEFTKYGKLNSVWIAFNPPGFAFVEFEHRDDAEKACDILNGSELLGSQLRVEIS 81

[Close]

BLAST of EMLSAG00000002557 vs. Select Arthropod Genomes
Match: gb|EFA02018.1| (RNA-binding protein Rsf1-like Protein [Tribolium castaneum])

HSP 1 Score: 48.9062 bits (115), Expect = 6.044e-7
Identity = 26/75 (34.67%), Postives = 41/75 (54.67%), Query Frame = 0

Query:    4 QEGTKLFVHGVRDTCPRSVLEDEFGKIGPVADVHIT--EKGXAFVTMMSAEDAEGAMRKLNGTTVHGQEVKVEIA 76
            +   +++V G+ D+  +  LE EF K G +  V +     G AF+  ++  DAE A   LNGT   G +++VEIA
Sbjct:    6 ERSARVYVGGLTDSVKKEDLETEFEKYGKLNSVWVAFNPPGFAFIEFINHSDAESACDSLNGTDFLGSKLRVEIA 80

[Close]

BLAST of EMLSAG00000002557 vs. Select Arthropod Genomes
Match: gb|KFM68489.1| (RNA-binding protein Rsf1, partial [Stegodyphus mimosarum])

HSP 1 Score: 48.1358 bits (113), Expect = 9.693e-7
Identity = 22/73 (30.14%), Postives = 41/73 (56.16%), Query Frame = 0

Query:    6 GTKLFVHGVRDTCPRSVLEDEFGKIGPVADVHIT--EKGXAFVTMMSAEDAEGAMRKLNGTTVHGQEVKVEIA 76
               ++V G+ +   +  LE EF K G +  V +     G AF+     +DA  A++++NG T++G E++V+I+
Sbjct:    3 SASVYVGGLSEDIQKEDLEREFSKFGNLTKVWVARNPPGFAFIEFEDDQDANEAIKEMNGATINGSEIRVDIS 75

[Close]

BLAST of EMLSAG00000002557 vs. nr
Match: gi|225711820|gb|ACO11756.1| (RNA-binding protein 3 [Lepeophtheirus salmonis] >gi|225712198|gb|ACO11945.1| RNA-binding protein 3 [Lepeophtheirus salmonis])

HSP 1 Score: 131.724 bits (330), Expect = 1.495e-36
Identity = 62/77 (80.52%), Postives = 68/77 (88.31%), Query Frame = 0

Query:    1 MPSQEGTKLFVHGVRDTCPRSVLEDEFGKIGPVADVHITEKGXAFVTMMSAEDAEGAMRKLNGTTVHGQEVKVEIAH 77
            MPS+  TKLFVHGVRDTCPRSVLEDEF KIGPV DV+ITEKG AFVTM ++EDA+ A RKLNGTTV GQE+KVEIAH
Sbjct:    1 MPSEGETKLFVHGVRDTCPRSVLEDEFSKIGPVTDVYITEKGYAFVTMTNSEDADDAARKLNGTTVDGQELKVEIAH 77

[Close]

BLAST of EMLSAG00000002557 vs. nr
Match: gi|594042407|ref|XP_006045739.1| (PREDICTED: putative RNA-binding protein 3 isoform X1 [Bubalus bubalis] >gi|594042409|ref|XP_006045740.1| PREDICTED: putative RNA-binding protein 3 isoform X2 [Bubalus bubalis] >gi|594042411|ref|XP_006045741.1| PREDICTED: putative RNA-binding protein 3 isoform X3 [Bubalus bubalis])

HSP 1 Score: 65.0846 bits (157), Expect = 1.656e-10
Identity = 41/107 (38.32%), Postives = 61/107 (57.01%), Query Frame = 0

Query:    1 MPSQEGTKLFVHGVRDTCPRSVLEDEFGKIGPVADVHITE-------KGXAFVTMMSAEDAEGAMRKLNGTTVHGQEVKVEIAHEGGRRGSRGGGYRGRFGGNDRGR 100
            M S+EG KLFV G+        LED F   GP+++V + +       +G  F+T  + E A  AMR +NG ++ G++++V+ A +   RGSRGG     FGG +RGR
Sbjct:    1 MSSEEG-KLFVGGLNFNTDERALEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHASNAMRAMNGESLDGRQIRVDHAGKSA-RGSRGGA----FGGYERGR 101

[Close]

BLAST of EMLSAG00000002557 vs. nr
Match: gi|594042413|ref|XP_006045742.1| (PREDICTED: putative RNA-binding protein 3 isoform X4 [Bubalus bubalis])

HSP 1 Score: 65.0846 bits (157), Expect = 1.923e-10
Identity = 41/107 (38.32%), Postives = 61/107 (57.01%), Query Frame = 0

Query:    1 MPSQEGTKLFVHGVRDTCPRSVLEDEFGKIGPVADVHITE-------KGXAFVTMMSAEDAEGAMRKLNGTTVHGQEVKVEIAHEGGRRGSRGGGYRGRFGGNDRGR 100
            M S+EG KLFV G+        LED F   GP+++V + +       +G  F+T  + E A  AMR +NG ++ G++++V+ A +   RGSRGG     FGG +RGR
Sbjct:    1 MSSEEG-KLFVGGLNFNTDERALEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHASNAMRAMNGESLDGRQIRVDHAGKSA-RGSRGGA----FGGYERGR 101

[Close]

BLAST of EMLSAG00000002557 vs. nr
Match: gi|507654782|ref|XP_004633702.1| (PREDICTED: RNA-binding protein 3 [Octodon degus])

HSP 1 Score: 63.5438 bits (153), Expect = 5.762e-10
Identity = 40/107 (37.38%), Postives = 61/107 (57.01%), Query Frame = 0

Query:    1 MPSQEGTKLFVHGVRDTCPRSVLEDEFGKIGPVADVHITE-------KGXAFVTMMSAEDAEGAMRKLNGTTVHGQEVKVEIAHEGGRRGSRGGGYRGRFGGNDRGR 100
            M S+EG KLFV G+        LED F   GP+++V + +       +G  F+T  + E A  AMR +NG ++ G++++V+ A +   RG+RGG   G FG + RGR
Sbjct:    1 MSSEEG-KLFVGGLNFNTDEQALEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHASDAMRAMNGESLDGRQIRVDHAGKSA-RGTRGG---GAFGAHGRGR 102

[Close]

BLAST of EMLSAG00000002557 vs. nr
Match: gi|348553582|ref|XP_003462605.1| (PREDICTED: RNA-binding protein 3 isoform X1 [Cavia porcellus] >gi|514446718|ref|XP_005000307.1| PREDICTED: RNA-binding protein 3 isoform X1 [Cavia porcellus])

HSP 1 Score: 63.1586 bits (152), Expect = 8.848e-10
Identity = 40/107 (37.38%), Postives = 62/107 (57.94%), Query Frame = 0

Query:    1 MPSQEGTKLFVHGVRDTCPRSVLEDEFGKIGPVADVHITE-------KGXAFVTMMSAEDAEGAMRKLNGTTVHGQEVKVEIAHEGGRRGSRGGGYRGRFGGNDRGR 100
            M S+EG KLFV G+  +     LED F   GP+++V + +       +G  F+T  + E A  AMR +NG ++ G++++V+ A +   RG+RGG   G FG + RGR
Sbjct:    1 MSSEEG-KLFVGGLNFSTDEQALEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHASDAMRAMNGESLDGRQIRVDHAGKSA-RGTRGG---GAFGAHGRGR 102

[Close]

BLAST of EMLSAG00000002557 vs. nr
Match: gi|1012186537|ref|XP_016008837.1| (PREDICTED: RNA-binding protein 3 isoform X1 [Rousettus aegyptiacus] >gi|1012186541|ref|XP_016008838.1| PREDICTED: RNA-binding protein 3 isoform X1 [Rousettus aegyptiacus])

HSP 1 Score: 62.7734 bits (151), Expect = 1.053e-9
Identity = 40/107 (37.38%), Postives = 60/107 (56.07%), Query Frame = 0

Query:    1 MPSQEGTKLFVHGVRDTCPRSVLEDEFGKIGPVADVHITE-------KGXAFVTMMSAEDAEGAMRKLNGTTVHGQEVKVEIAHEGGRRGSRGGGYRGRFGGNDRGR 100
            M S+EG KLFV G+        LED F   GP+++V + +       +G  F+T  + E A  AMR +NG ++ G++++V+ A +   RGSRGG     FG + RGR
Sbjct:    1 MSSEEG-KLFVGGLNFNTDEQALEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHASDAMRAMNGESLDGRQIRVDHAGKSA-RGSRGGA----FGAHGRGR 101

[Close]

BLAST of EMLSAG00000002557 vs. nr
Match: gi|1012186544|ref|XP_016008839.1| (PREDICTED: RNA-binding protein 3 isoform X2 [Rousettus aegyptiacus] >gi|1012186548|ref|XP_016008840.1| PREDICTED: RNA-binding protein 3 isoform X2 [Rousettus aegyptiacus])

HSP 1 Score: 62.7734 bits (151), Expect = 1.089e-9
Identity = 40/107 (37.38%), Postives = 60/107 (56.07%), Query Frame = 0

Query:    1 MPSQEGTKLFVHGVRDTCPRSVLEDEFGKIGPVADVHITE-------KGXAFVTMMSAEDAEGAMRKLNGTTVHGQEVKVEIAHEGGRRGSRGGGYRGRFGGNDRGR 100
            M S+EG KLFV G+        LED F   GP+++V + +       +G  F+T  + E A  AMR +NG ++ G++++V+ A +   RGSRGG     FG + RGR
Sbjct:    1 MSSEEG-KLFVGGLNFNTDEQALEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHASDAMRAMNGESLDGRQIRVDHAGKSA-RGSRGGA----FGAHGRGR 101

[Close]

BLAST of EMLSAG00000002557 vs. nr
Match: gi|350538645|ref|NP_001233728.1| (RNA-binding protein 3 [Cricetulus griseus] >gi|524970642|ref|XP_005085188.1| PREDICTED: RNA-binding protein 3 isoform X1 [Mesocricetus auratus] >gi|625204784|ref|XP_007643790.1| PREDICTED: RNA-binding protein 3 isoform X1 [Cricetulus griseus] >gi|1032884664|ref|XP_016832445.1| PREDICTED: RNA-binding protein 3 isoform X1 [Cricetulus griseus] >gi|189170130|gb|ACD80090.1| RNA-binding motif 3 [Cricetulus griseus] >gi|537120012|gb|ERE63734.1| RNA-binding motif 3 [Cricetulus griseus] >gi|1040286592|gb|OBS81148.1| hypothetical protein A6R68_20670 [Neotoma lepida])

HSP 1 Score: 62.7734 bits (151), Expect = 1.122e-9
Identity = 40/107 (37.38%), Postives = 60/107 (56.07%), Query Frame = 0

Query:    1 MPSQEGTKLFVHGVRDTCPRSVLEDEFGKIGPVADVHITE-------KGXAFVTMMSAEDAEGAMRKLNGTTVHGQEVKVEIAHEGGRRGSRGGGYRGRFGGNDRGR 100
            M S+EG KLFV G+        LED F   GP+++V + +       +G  F+T  + E A  AMR +NG ++ G++++V+ A +   RGSRGG     FG + RGR
Sbjct:    1 MSSEEG-KLFVGGLNFNTDEQALEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHASDAMRAMNGESLDGRQIRVDHAGKSA-RGSRGGA----FGAHGRGR 101

[Close]

BLAST of EMLSAG00000002557 vs. nr
Match: gi|589965191|ref|XP_006995130.1| (PREDICTED: RNA-binding protein 3 isoform X1 [Peromyscus maniculatus bairdii] >gi|1008797649|ref|XP_015844094.1| PREDICTED: RNA-binding protein 3 isoform X1 [Peromyscus maniculatus bairdii])

HSP 1 Score: 62.7734 bits (151), Expect = 1.122e-9
Identity = 40/107 (37.38%), Postives = 60/107 (56.07%), Query Frame = 0

Query:    1 MPSQEGTKLFVHGVRDTCPRSVLEDEFGKIGPVADVHITE-------KGXAFVTMMSAEDAEGAMRKLNGTTVHGQEVKVEIAHEGGRRGSRGGGYRGRFGGNDRGR 100
            M S+EG KLFV G+        LED F   GP+++V + +       +G  F+T  + E A  AMR +NG ++ G++++V+ A +   RGSRGG     FG + RGR
Sbjct:    1 MSSEEG-KLFVGGLNFNTDEQALEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHASDAMRAMNGESLDGRQIRVDHAGKSA-RGSRGGA----FGAHGRGR 101

[Close]

BLAST of EMLSAG00000002557 vs. nr
Match: gi|731270970|ref|XP_010604679.1| (PREDICTED: RNA-binding protein 3 isoform X2 [Fukomys damarensis])

HSP 1 Score: 62.7734 bits (151), Expect = 1.146e-9
Identity = 40/107 (37.38%), Postives = 61/107 (57.01%), Query Frame = 0

Query:    1 MPSQEGTKLFVHGVRDTCPRSVLEDEFGKIGPVADVHITE-------KGXAFVTMMSAEDAEGAMRKLNGTTVHGQEVKVEIAHEGGRRGSRGGGYRGRFGGNDRGR 100
            M S+EG KLFV G+        LED F   GP+++V + +       +G  F+T  + E A  AMR +NG ++ G++++V+ A +   RG+RGG   G FG + RGR
Sbjct:    1 MSSEEG-KLFVGGLNFNTDEQALEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHASDAMRAMNGESLDGRQIRVDHAGKSA-RGTRGG---GAFGAHGRGR 102

The following BLAST results are available for this feature:

BLAST of EMLSAG00000002557 vs. GO
BLAST of EMLSAG00000002557 vs. C. finmarchicus
BLAST of EMLSAG00000002557 vs. L. salmonis peptides
BLAST of EMLSAG00000002557 vs. SwissProt
BLAST of EMLSAG00000002557 vs. Select Arthropod Genomes
BLAST of EMLSAG00000002557 vs. nr
BLAST of EMLSAG00000002557 vs. Tigriopus kingsejongenis genes

BLAST of EMLSAG00000002557 vs. GO
Analysis Date: 2014-04-02 (Blast vs. GO)
Total hits: 25


Match Name	E-value	Identity	Description
-	3.689e-8	35.71	symbol:CIRBP "Cold-inducible RNA-binding protein" ...	[more]
-	3.729e-8	34.88	symbol:RBMY1B "RNA-binding motif protein, Y chromo...	[more]
-	3.802e-8	34.88	symbol:RBMY1E "RNA-binding motif protein, Y chromo...	[more]
-	3.802e-8	34.88	symbol:RBMY1D "Uncharacterized protein" species:96...	[more]
-	4.119e-8	34.88	symbol:RBMY1E "RNA-binding motif protein, Y chromo...	[more]

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BLAST of EMLSAG00000002557 vs. C. finmarchicus
Analysis Date: 2014-05-09 (TblastN vs C. finmarchicus TSA)
Total hits: 25


Match Name	E-value	Identity	Description
gi\|592779045\|gb\|GAXK01175523.1\|	4.421e-16	50.00	TSA: Calanus finmarchicus comp2654_c1_seq1 transcr...	[more]
gi\|592779046\|gb\|GAXK01175522.1\|	4.659e-16	50.00	TSA: Calanus finmarchicus comp2654_c0_seq1 transcr...	[more]
gi\|592766328\|gb\|GAXK01188240.1\|	2.506e-15	48.00	TSA: Calanus finmarchicus comp10430_c0_seq1 transc...	[more]
gi\|592821267\|gb\|GAXK01133301.1\|	5.072e-13	48.61	TSA: Calanus finmarchicus comp27914_c0_seq1 transc...	[more]
gi\|592788500\|gb\|GAXK01166068.1\|	5.833e-13	45.33	TSA: Calanus finmarchicus comp99_c0_seq1 transcrib...	[more]
gi\|592788498\|gb\|GAXK01166070.1\|	5.920e-13	45.33	TSA: Calanus finmarchicus comp99_c2_seq1 transcrib...	[more]
gi\|592785473\|gb\|GAXK01169095.1\|	8.084e-13	46.67	TSA: Calanus finmarchicus comp1623_c1_seq1 transcr...	[more]
gi\|592786330\|gb\|GAXK01168238.1\|	8.217e-13	45.95	TSA: Calanus finmarchicus comp862_c1_seq1 transcri...	[more]
gi\|592785476\|gb\|GAXK01169092.1\|	6.005e-12	41.33	TSA: Calanus finmarchicus comp1501_c0_seq1 transcr...	[more]
gi\|592785791\|gb\|GAXK01168777.1\|	1.988e-11	45.95	TSA: Calanus finmarchicus comp522_c1_seq1 transcri...	[more]

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BLAST of EMLSAG00000002557 vs. L. salmonis peptides
Analysis Date: 2014-05-10 (Blastp vs. self)
Total hits: 6


Match Name	E-value	Identity	Description
EMLSAP00000002557	7.308e-98	100.00	pep:novel supercontig:LSalAtl2s:LSalAtl2s1510:5077...	[more]
EMLSAP00000007347	1.835e-46	78.51	pep:novel supercontig:LSalAtl2s:LSalAtl2s4162:3600...	[more]
EMLSAP00000002556	4.278e-39	76.60	pep:novel supercontig:LSalAtl2s:LSalAtl2s1510:2453...	[more]
EMLSAP00000000098	6.574e-21	51.25	pep:novel supercontig:LSalAtl2s:LSalAtl2s1017:3450...	[more]
EMLSAP00000005955	3.585e-17	69.39	pep:novel supercontig:LSalAtl2s:LSalAtl2s321:63081...	[more]
EMLSAP00000007190	2.729e-7	34.21	pep:novel supercontig:LSalAtl2s:LSalAtl2s404:34778...	[more]

BLAST of EMLSAG00000002557 vs. SwissProt
Analysis Date: 2017-02-10 (Blastp vs. SwissProt)
Total hits: 25


Match Name	E-value	Identity	Description
gi\|952543496\|sp\|W8E7I1.2\|RBM3_CAPHI	1.211e-11	36.46	RecName: Full=RNA-binding protein 3; AltName: Full...	[more]
gi\|284022113\|sp\|Q925G0.2\|RBM3_RAT	5.012e-11	35.51	RecName: Full=RNA-binding protein 3; AltName: Full...	[more]
gi\|1710620\|sp\|P98179.1\|RBM3_HUMAN	1.863e-9	34.09	RecName: Full=RNA-binding protein 3; AltName: Full...	[more]
gi\|166199747\|sp\|Q15415.2\|RBY1F_HUMAN	1.881e-9	33.04	RecName: Full=RNA-binding motif protein, Y chromos...	[more]
gi\|6093936\|sp\|O89086.1\|RBM3_MOUSE	2.507e-9	34.94	RecName: Full=RNA-binding protein 3; AltName: Full...	[more]
gi\|378522970\|sp\|P0DJD4.1\|RBY1C_HUMAN	1.503e-8	34.88	RecName: Full=RNA-binding motif protein, Y chromos...	[more]
gi\|190360159\|sp\|A6NDE4.2\|RBY1B_HUMAN	1.805e-8	34.88	RecName: Full=RNA-binding motif protein, Y chromos...	[more]
gi\|190360154\|sp\|A6NEQ0.1\|RBY1E_HUMAN	2.006e-8	34.88	RecName: Full=RNA-binding motif protein, Y chromos...	[more]
gi\|190360153\|sp\|P0C7P1.1\|RBY1D_HUMAN	2.025e-8	34.88	RecName: Full=RNA-binding motif protein, Y chromos...	[more]
gi\|46395643\|sp\|P60826.1\|CIRBP_CRIGR	2.030e-8	35.71	RecName: Full=Cold-inducible RNA-binding protein; ...	[more]

Pages

BLAST of EMLSAG00000002557 vs. Select Arthropod Genomes
Analysis Date: 2017-02-20 (Blastp vs. Selected Arthropods)
Total hits: 7


Match Name	E-value	Identity	Description
gb\|KPM03387.1\|	4.554e-9	37.80	RNA-binding protein-like protein 3 [Sarcoptes scab...	[more]
gb\|KFM68213.1\|	1.994e-7	32.91	Serine/arginine-rich splicing factor 12, partial [...	[more]
EAA43387.4	2.152e-7	34.83	AGAP009142-PA, partial [Anopheles gambiae str. PES...	[more]
AGB92853.1	4.226e-7	37.18	repressor splicing factor 1, isoform B [Drosophila...	[more]
AAF52890.1	4.226e-7	37.18	repressor splicing factor 1, isoform A [Drosophila...	[more]
gb\|EFA02018.1\|	6.044e-7	34.67	RNA-binding protein Rsf1-like Protein [Tribolium c...	[more]
gb\|KFM68489.1\|	9.693e-7	30.14	RNA-binding protein Rsf1, partial [Stegodyphus mim...	[more]

BLAST of EMLSAG00000002557 vs. nr
Analysis Date: 2017-02-20 (Blastp vs. NR (2/2017))
Total hits: 25


Match Name	E-value	Identity	Description
gi\|225711820\|gb\|ACO11756.1\|	1.495e-36	80.52	RNA-binding protein 3 [Lepeophtheirus salmonis] >g...	[more]
gi\|594042407\|ref\|XP_006045739.1\|	1.656e-10	38.32	PREDICTED: putative RNA-binding protein 3 isoform ...	[more]
gi\|594042413\|ref\|XP_006045742.1\|	1.923e-10	38.32	PREDICTED: putative RNA-binding protein 3 isoform ...	[more]
gi\|507654782\|ref\|XP_004633702.1\|	5.762e-10	37.38	PREDICTED: RNA-binding protein 3 [Octodon degus]	[more]
gi\|348553582\|ref\|XP_003462605.1\|	8.848e-10	37.38	PREDICTED: RNA-binding protein 3 isoform X1 [Cavia...	[more]
gi\|1012186537\|ref\|XP_016008837.1\|	1.053e-9	37.38	PREDICTED: RNA-binding protein 3 isoform X1 [Rouse...	[more]
gi\|1012186544\|ref\|XP_016008839.1\|	1.089e-9	37.38	PREDICTED: RNA-binding protein 3 isoform X2 [Rouse...	[more]
gi\|350538645\|ref\|NP_001233728.1\|	1.122e-9	37.38	RNA-binding protein 3 [Cricetulus griseus] >gi\|524...	[more]
gi\|589965191\|ref\|XP_006995130.1\|	1.122e-9	37.38	PREDICTED: RNA-binding protein 3 isoform X1 [Perom...	[more]
gi\|731270970\|ref\|XP_010604679.1\|	1.146e-9	37.38	PREDICTED: RNA-binding protein 3 isoform X2 [Fukom...	[more]

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BLAST of EMLSAG00000002557 vs. Tigriopus kingsejongenis genes
Analysis Date: 2018-04-18 (Blastp vs. Tigriopus kingsejongensis proteins)
Total hits: 0


Match Name	E-value	Identity	Description

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
LSalAtl2s1510	supercontig	LSalAtl2s1510:50770..51213 +

Analyses

This gene is derived from or has results from the following analyses


Analysis Name	Date Performed
ensembl	2013-09-26 .965016
Blast vs. GO	2014-04-02
TblastN vs C. finmarchicus TSA	2014-05-09
Blastp vs. self	2014-05-10
Blastp vs. SwissProt	2017-02-10
Blastp vs. Selected Arthropods	2017-02-20
Blastp vs. NR (2/2017)	2017-02-20
Blastp vs. Tigriopus kingsejongensis proteins	2018-04-18

Properties


Property Name	Value
Logic name	ensemblgenomes
Description	augustus_masked-LSalAtl2s1510-processed-gene-0.5
Biotype	protein_coding
Evidence	IEA
Note	RNA-binding protein 3 [Lepeophtheirus salmonis]

Cross References

External references for this gene


Database	Accession
Ensembl Metazoa (gene)	EMLSAG00000002557 (primary cross-reference)

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Species	Type
EMLSAT00000002557	EMLSAT00000002557-698404	Lepeophtheirus salmonis	mRNA

Sequences

The following sequences are available for this feature:

gene from alignment at LSalAtl2s1510:50770..51213+

gene from alignment at LSalAtl2s1510:50770..51213+

Legend: mRNA

Hold the cursor over a type above to highlight its positions in the sequence below.

>EMLSAG00000002557-685323 ID=EMLSAG00000002557-685323|Name=EMLSAG00000002557|organism=Lepeophtheirus salmonis|type=gene|length=444bp|location=Sequence derived from alignment at LSalAtl2s1510:50770..51213+ (Lepeophtheirus salmonis)
ATGCCGTCTCAGGAAGGAACCAAATTATTTGTCCATGGTGTTCGAGACAC
TTGTCCCCGCAGTGTTCTAGAAGATGAATTCGGTAAAATCGGTCCCGTGG
CGGATGTACATATTACCGAGAAGGGCTYCGCCTTTGTTACGATGATGAGC
GCCGAGGACGCTGAGGGTGCCATGCGCAAGTTAAATGGTACAACGGTCCA
TGGTCAGGAAGTTAAGGTGGAGATTGCCCATGAAGGAGGTCGTCGTGGAT
CCCGGGGTGGAGGCTACAGAGGCCGATTTGGCGGCAATGATCGGGGACGA
TTCGGAGGMGGCGGTGGAAACCGGTACAATGACAATAATGATCGCCGCAG
CTATGGAAGTGGCGGMGGAGGAGGAGGATACTCCAGGMCTGGMGGAGACC
GGGGAGATCGTGGAGACCGTGGAGGTGATTGGGGAGGATATTAA

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