EMLSAG00000003258, EMLSAG00000003258-686024 (gene) Lepeophtheirus salmonis

Overview
NameEMLSAG00000003258
Unique NameEMLSAG00000003258-686024
Typegene
OrganismLepeophtheirus salmonis (salmon louse)
Associated RNAi Experiments

Nothing found

Homology
[Close]
BLAST of EMLSAG00000003258 vs. C. finmarchicus
Match: gi|592770875|gb|GAXK01183693.1| (TSA: Calanus finmarchicus comp56428_c3_seq2 transcribed RNA sequence)

HSP 1 Score: 30.8018 bits (68), Expect = 8.641e-1
Identity = 21/80 (26.25%), Postives = 29/80 (36.25%), Query Frame = 0 
Query:   25 IQNGTITPSNIRTSKPPTDNVTRSLLLTTI-------EEETIAPNVTERCLTVDDRECQFPIIIGNTSISMCISIGLGEG 97
            +QNG     N++  K PTDN       +         E   +  +  E CL+     C FP      S S C + G   G
Sbjct:  176 LQNGWCFLDNVQDPKNPTDNCFEDAQFSVADGRFWSNEACNVLKSTPEACLSTSSNPCIFPFTYQGVSYSSCSTAGSENG 415
[Close]
BLAST of EMLSAG00000003258 vs. C. finmarchicus
Match: gi|592916106|gb|GAXK01042269.1| (TSA: Calanus finmarchicus comp299868_c0_seq1 transcribed RNA sequence)

HSP 1 Score: 28.8758 bits (63), Expect = 3.709e+0
Identity = 14/26 (53.85%), Postives = 15/26 (57.69%), Query Frame = 0 
Query:   73 RECQFPIIIGNTSISMCISIGLGEGL 98
            R CQFP I G  S + CIS    EGL
Sbjct: 2737 RPCQFPFIFGGVSRTGCISDSDPEGL 2814
[Close]
BLAST of EMLSAG00000003258 vs. C. finmarchicus
Match: gi|592771850|gb|GAXK01182718.1| (TSA: Calanus finmarchicus comp848534_c0_seq1 transcribed RNA sequence)

HSP 1 Score: 28.1054 bits (61), Expect = 7.834e+0
Identity = 12/29 (41.38%), Postives = 19/29 (65.52%), Query Frame = 0 
Query:   14 ANITVSPLPSTIQNGTITPSNIRTSKPPT 42
            +N+    LP++ ++ TI P  +RT KPPT
Sbjct:  254 SNLICFTLPTSFRDKTIWPLLVRTRKPPT 340
[Close]
BLAST of EMLSAG00000003258 vs. L. salmonis peptides
Match: EMLSAP00000003258 (pep:novel supercontig:LSalAtl2s:LSalAtl2s1791:10266:11252:-1 gene:EMLSAG00000003258 transcript:EMLSAT00000003258 description:"maker-LSalAtl2s1791-snap-gene-0.5")

HSP 1 Score: 213.772 bits (543), Expect = 1.969e-72
Identity = 110/110 (100.00%), Postives = 110/110 (100.00%), Query Frame = 0 
Query:    1 LPTPTFPPIKTTVANITVSPLPSTIQNGTITPSNIRTSKPPTDNVTRSLLLTTIEEETIAPNVTERCLTVDDRECQFPIIIGNTSISMCISIGLGEGLIPMPIAITGEFY 110
            LPTPTFPPIKTTVANITVSPLPSTIQNGTITPSNIRTSKPPTDNVTRSLLLTTIEEETIAPNVTERCLTVDDRECQFPIIIGNTSISMCISIGLGEGLIPMPIAITGEFY
Sbjct:    1 LPTPTFPPIKTTVANITVSPLPSTIQNGTITPSNIRTSKPPTDNVTRSLLLTTIEEETIAPNVTERCLTVDDRECQFPIIIGNTSISMCISIGLGEGLIPMPIAITGEFY 110
[Close]
BLAST of EMLSAG00000003258 vs. L. salmonis peptides
Match: EMLSAP00000003561 (pep:novel supercontig:LSalAtl2s:LSalAtl2s1957:14612:15869:1 gene:EMLSAG00000003561 transcript:EMLSAT00000003561 description:"maker-LSalAtl2s1957-augustus-gene-0.6")

HSP 1 Score: 119.783 bits (299), Expect = 3.683e-35
Identity = 61/70 (87.14%), Postives = 64/70 (91.43%), Query Frame = 0 
Query:   35 IRTSKPPTDNVTRSLLLTTIEEETIAPNVTERCLTVDDRECQFPIIIGNTSISMCISIGLGEGLIPMPIA 104
            IRT KPPTDNVT SLLLTTIEEETIAPNVTERCLTVDDRECQFPIIIGNTSISMCISIGLG+G+   P+ 
Sbjct:    1 IRTPKPPTDNVTCSLLLTTIEEETIAPNVTERCLTVDDRECQFPIIIGNTSISMCISIGLGDGVYFCPVH 70
[Close]
BLAST of EMLSAG00000003258 vs. L. salmonis peptides
Match: EMLSAP00000003562 (pep:novel supercontig:LSalAtl2s:LSalAtl2s1957:23934:24835:-1 gene:EMLSAG00000003562 transcript:EMLSAT00000003562 description:"maker-LSalAtl2s1957-augustus-gene-0.7")

HSP 1 Score: 107.457 bits (267), Expect = 3.130e-30
Identity = 53/59 (89.83%), Postives = 56/59 (94.92%), Query Frame = 0 
Query:   45 VTRSLLLTTIEEETIAPNVTERCLTVDDRECQFPIIIGNTSISMCISIGLGEGLIPMPI 103
            VTRSLLLTTIEEETIAPNVTERCLTVDDRECQFPIIIGNTSISMCISIGLG+G+   P+
Sbjct:   17 VTRSLLLTTIEEETIAPNVTERCLTVDDRECQFPIIIGNTSISMCISIGLGDGVYFCPV 75
The following BLAST results are available for this feature:
BLAST of EMLSAG00000003258 vs. GO
Analysis Date: 2014-04-02 (Blast vs. GO)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
BLAST of EMLSAG00000003258 vs. C. finmarchicus
Analysis Date: 2014-05-09 (TblastN vs C. finmarchicus TSA)
Total hits: 3
Match NameE-valueIdentityDescription
gi|592770875|gb|GAXK01183693.1|8.641e-126.25TSA: Calanus finmarchicus comp56428_c3_seq2 transc... [more]
gi|592916106|gb|GAXK01042269.1|3.709e+053.85TSA: Calanus finmarchicus comp299868_c0_seq1 trans... [more]
gi|592771850|gb|GAXK01182718.1|7.834e+041.38TSA: Calanus finmarchicus comp848534_c0_seq1 trans... [more]
back to top
BLAST of EMLSAG00000003258 vs. L. salmonis peptides
Analysis Date: 2014-05-10 (Blastp vs. self)
Total hits: 3
Match NameE-valueIdentityDescription
EMLSAP000000032581.969e-72100.00pep:novel supercontig:LSalAtl2s:LSalAtl2s1791:1026... [more]
EMLSAP000000035613.683e-3587.14pep:novel supercontig:LSalAtl2s:LSalAtl2s1957:1461... [more]
EMLSAP000000035623.130e-3089.83pep:novel supercontig:LSalAtl2s:LSalAtl2s1957:2393... [more]
back to top
BLAST of EMLSAG00000003258 vs. SwissProt
Analysis Date: 2017-02-10 (Blastp vs. SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
BLAST of EMLSAG00000003258 vs. Select Arthropod Genomes
Analysis Date: 2017-02-20 (Blastp vs. Selected Arthropods)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
BLAST of EMLSAG00000003258 vs. nr
Analysis Date: 2017-02-20 (Blastp vs. NR (2/2017))
Total hits: 0
Match NameE-valueIdentityDescription
back to top
BLAST of EMLSAG00000003258 vs. Tigriopus kingsejongenis genes
Analysis Date: 2018-04-18 (Blastp vs. Tigriopus kingsejongensis proteins)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
LSalAtl2s1791supercontigLSalAtl2s1791:10266..11252 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
ensembl2013-09-26 .965016
Blast vs. GO2014-04-02
TblastN vs C. finmarchicus TSA2014-05-09
Blastp vs. self2014-05-10
Blastp vs. SwissProt2017-02-10
Blastp vs. Selected Arthropods2017-02-20
Blastp vs. NR (2/2017)2017-02-20
Blastp vs. Tigriopus kingsejongensis proteins2018-04-18
Properties
Property NameValue
Logic nameensemblgenomes
Descriptionmaker-LSalAtl2s1791-snap-gene-0.5
Biotypeprotein_coding
EvidenceIEA
NoteHypothetical protein
Cross References
External references for this gene
DatabaseAccession
Ensembl Metazoa (gene)EMLSAG00000003258 (primary cross-reference)
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
EMLSAT00000003258EMLSAT00000003258-699105Lepeophtheirus salmonismRNA


Sequences
The following sequences are available for this feature:

gene from alignment at LSalAtl2s1791:10266..11252-

Legend: mRNA
Hold the cursor over a type above to highlight its positions in the sequence below.
>EMLSAG00000003258-686024 ID=EMLSAG00000003258-686024|Name=EMLSAG00000003258|organism=Lepeophtheirus salmonis|type=gene|length=987bp|location=Sequence derived from alignment at LSalAtl2s1791:10266..11252- (Lepeophtheirus salmonis)
CTACCAACACCAACTTTTCCACCAATTAAAACAACTGTAGCTAATAGTAA
GTTAATTAAAGTTAAAATTGATTCATGTAACTAAGAATATCTATAAAAKA
TGTTACAATCACTTTGTTTACACCATTGAATTGTAAGTTCATTCTTATAT
CCATTTGTGTAATTAATATAAATTTATAGCAAGAACGAGACGCTTCAACC
CTCCATCTATATTCAATTTGTACTAAATTCTTTTTAATGGAAGAACATTA
ATTATCCCTTTACACTTTTACAGTTACTGTCTCACCACTTCCATCAACAA
TTCAGAATGGAACAATTACACCATCAAGTAAAATATAATTTTCAGTTTTT
ATAGAATGATACATTCAGGAAAATATTTCTTTTATTTCTCCAATATAGAC
ATAAGAACTTCGAAACCTCCGACTGATAATGGTAAATGCTATTTCTAATA
ACTTTACATTTTAATGTAGTGAAGATTCAATGTCTTCTCAATTAAAGAAT
ATAAATGATACTTTTATGATTTTACAGTTACTCGTTCCCTACTTCTAACA
ACAATTGAGGAAGAAACAATTGCACCAAATGGTAAAATCTAATTATCTTA
TCTCATCATCTTTAATTAATCAACAATACAATTTATCACTTGAAATTATT
AACTATTTTATTCACTTATAGTCACTGAACGTTGTTTGACGGTTGACGAT
AGGGAATGTCAATTCCCGATTATTATTGGGAATACGTCCATTAGTATGTG
TATTAGCATAGGCTTAGGAGAGGGTGTATATTTCTGCCCCGTTCATACAC
TACCTGATGAAATGGCTAMTCCMGATAGTTTATYAGTTTTAGGGATTTGC
AAACCAGATTGTCCAAGTATATAATCACATAAATTAAACTTACTAAATAA
AAAACGATATTTGCGTTCTGTTTATACTTTCATTTTGTTTTGTCAGGACT
AATTCCTATGCCCATAGCAATAACGGGTGAGTTTTAT
back to top
Add to Basket