EMLSAG00000004547, EMLSAG00000004547-687313 (gene) Lepeophtheirus salmonis
|
Overview
Associated RNAi Experiments
Homology
BLAST of EMLSAG00000004547 vs. C. finmarchicus
Match: gi|592910333|gb|GAXK01048042.1| (TSA: Calanus finmarchicus comp1254182_c0_seq2 transcribed RNA sequence) HSP 1 Score: 41.2022 bits (95), Expect = 7.558e-3 Identity = 47/226 (20.80%), Postives = 101/226 (44.69%), Query Frame = 0
Query: 246 SYRLLITSLSFMFVILYAYFSSVLVMLGSTKGQ------VKFNKISDFLA-DSSWRLIHIEDGITTF--KRRFYDNQAFLDTYDPKKFSVPTIMEGLEKAKNGKVAXVAYISMIQHFI--QLSYYNKVRYEEFDIIDPAIDSYYYAFPINSPLIWSFNKVMHSLRNRGIIDKIYQ------DDKTSKETIESTNVDINSIIEIYLLLMIGYMLSLIYLMLEIIFYQ 454
S RL+ + +I A +++ L T+ + V+ +++S+ L+ S+R +G T F K+ F + ++ K+F+ PT+ EG + K G + Y + + ++ Q N + + A+ Y AFP S + FN+ + R G ++++ + ++ S + + + + LL G LS+++L++E I+++
Sbjct: 2007 SARLMANVWALFALIFLAIYTANLAAFMITREEYFNLVGVQDSRLSNPLSLKPSFRFGTTPNGATDFVMKKNFPNMHMYM-----KEFNKPTVKEGAKAVKQGSLDAFIYDATVLEYLVGQDDECNMLTVGSWY----AMTGYGIAFPKPSKWLPFFNEQLMLYRENGDLERLQRFWFTGACKPGERKKSSSKPLALAQFMSAFFLLGCGVCLSVVFLIIEHIYFK 2657
BLAST of EMLSAG00000004547 vs. C. finmarchicus
Match: gi|592910334|gb|GAXK01048041.1| (TSA: Calanus finmarchicus comp1254182_c0_seq1 transcribed RNA sequence) HSP 1 Score: 41.2022 bits (95), Expect = 7.560e-3 Identity = 47/226 (20.80%), Postives = 101/226 (44.69%), Query Frame = 0
Query: 246 SYRLLITSLSFMFVILYAYFSSVLVMLGSTKGQ------VKFNKISDFLA-DSSWRLIHIEDGITTF--KRRFYDNQAFLDTYDPKKFSVPTIMEGLEKAKNGKVAXVAYISMIQHFI--QLSYYNKVRYEEFDIIDPAIDSYYYAFPINSPLIWSFNKVMHSLRNRGIIDKIYQ------DDKTSKETIESTNVDINSIIEIYLLLMIGYMLSLIYLMLEIIFYQ 454
S RL+ + +I A +++ L T+ + V+ +++S+ L+ S+R +G T F K+ F + ++ K+F+ PT+ EG + K G + Y + + ++ Q N + + A+ Y AFP S + FN+ + R G ++++ + ++ S + + + + LL G LS+++L++E I+++
Sbjct: 2007 SARLMANVWALFALIFLAIYTANLAAFMITREEYFNLVGVQDSRLSNPLSLKPSFRFGTTPNGATDFVMKKNFPNMHMYM-----KEFNKPTVKEGAKAVKQGSLDAFIYDATVLEYLVGQDDECNMLTVGSWY----AMTGYGIAFPKPSKWLPFFNEQLMLYRENGDLERLQRFWFTGACKPGERKKSSSKPLALAQFMSAFFLLGCGVCLSVVFLIIEHIYFK 2657
BLAST of EMLSAG00000004547 vs. C. finmarchicus
Match: gi|592804573|gb|GAXK01149995.1| (TSA: Calanus finmarchicus comp2730689_c0_seq1 transcribed RNA sequence) HSP 1 Score: 40.0466 bits (92), Expect = 1.291e-2 Identity = 20/69 (28.99%), Postives = 33/69 (47.83%), Query Frame = 0
Query: 116 TGKTIQLTDIIANILNFTYSCYMTKSTEWGFEVKNKVPVTLLEHMAYGISDFGLPILVWTEKRNKIVDF 184
+G I + + LNFTY +WG +N L+ H YG +++ + +L TE R ++DF
Sbjct: 1043 SGYEILQLAALGDFLNFTYKTIEPPDGQWGKAGENGTWTGLIGHSLYGQTNWSMGMLSLTEDREAVIDF 1249
BLAST of EMLSAG00000004547 vs. C. finmarchicus
Match: gi|592776839|gb|GAXK01177729.1| (TSA: Calanus finmarchicus comp6486105_c0_seq1 transcribed RNA sequence) HSP 1 Score: 35.4242 bits (80), Expect = 1.921e-1 Identity = 19/74 (25.68%), Postives = 37/74 (50.00%), Query Frame = 0
Query: 73 DMNGKIKKDYLNFNGIHFKTYSRPWYSYLEMNCSQDFD-SPCNCTGKTIQLTDIIANILNFTYSCYMTKSTEWG 145
+M K+++ N G HF+ PW +++ + ++ P + G + + +A LNFTYS ++ +WG
Sbjct: 260 EMENKLERRK-NLLGKHFRAVFLPWSTFIWLPDNEKASYEPDDWFGMVPDIFNSLARQLNFTYSIARSRDGQWG 478
BLAST of EMLSAG00000004547 vs. C. finmarchicus
Match: gi|592764114|gb|GAXK01190454.1| (TSA: Calanus finmarchicus comp990749_c0_seq1 transcribed RNA sequence) HSP 1 Score: 35.4242 bits (80), Expect = 4.563e-1 Identity = 23/86 (26.74%), Postives = 42/86 (48.84%), Query Frame = 0
Query: 373 AIDSYYYAFPINSPLIWSFNKVMHSLRNRGIIDKIYQ------DDKTSKETIESTNVDINSIIEIYLLLMIGYMLSLIYLMLEIIF 452
A+ Y AFP NS FN+++ R G ++++ + +E S + I+ + +LLL++G + SL L+ E I+
Sbjct: 717 AMTGYGLAFPQNSKFKTMFNEMLLEYRENGDLERLGRYWLHGVCKPNMQEKRASEPLSIDQFLSAFLLLILGTICSLFLLICEHIY 974
BLAST of EMLSAG00000004547 vs. L. salmonis peptides
Match: EMLSAP00000004547 (pep:novel supercontig:LSalAtl2s:LSalAtl2s237:687140:697956:1 gene:EMLSAG00000004547 transcript:EMLSAT00000004547 description:"maker-LSalAtl2s237-augustus-gene-7.15") HSP 1 Score: 941.799 bits (2433), Expect = 0.000e+0 Identity = 460/460 (100.00%), Postives = 460/460 (100.00%), Query Frame = 0
Query: 1 MESIEVFSKNRGTENLFLVQLGNVTYSNDQIRKFLSDIPIFTSFYWICIDDIVLEINLFGKYHSPIIRSVKYDMNGKIKKDYLNFNGIHFKTYSRPWYSYLEMNCSQDFDSPCNCTGKTIQLTDIIANILNFTYSCYMTKSTEWGFEVKNKVPVTLLEHMAYGISDFGLPILVWTEKRNKIVDFVKCSTFTTGAIVYNTGQQDLHSLFRAFSKKTWILLLTVLVISILFIGMVHFCRTESYFESQSYRLLITSLSFMFVILYAYFSSVLVMLGSTKGQVKFNKISDFLADSSWRLIHIEDGITTFKRRFYDNQAFLDTYDPKKFSVPTIMEGLEKAKNGKVAXVAYISMIQHFIQLSYYNKVRYEEFDIIDPAIDSYYYAFPINSPLIWSFNKVMHSLRNRGIIDKIYQDDKTSKETIESTNVDINSIIEIYLLLMIGYMLSLIYLMLEIIFYQKKLNKK 460
MESIEVFSKNRGTENLFLVQLGNVTYSNDQIRKFLSDIPIFTSFYWICIDDIVLEINLFGKYHSPIIRSVKYDMNGKIKKDYLNFNGIHFKTYSRPWYSYLEMNCSQDFDSPCNCTGKTIQLTDIIANILNFTYSCYMTKSTEWGFEVKNKVPVTLLEHMAYGISDFGLPILVWTEKRNKIVDFVKCSTFTTGAIVYNTGQQDLHSLFRAFSKKTWILLLTVLVISILFIGMVHFCRTESYFESQSYRLLITSLSFMFVILYAYFSSVLVMLGSTKGQVKFNKISDFLADSSWRLIHIEDGITTFKRRFYDNQAFLDTYDPKKFSVPTIMEGLEKAKNGKVAXVAYISMIQHFIQLSYYNKVRYEEFDIIDPAIDSYYYAFPINSPLIWSFNKVMHSLRNRGIIDKIYQDDKTSKETIESTNVDINSIIEIYLLLMIGYMLSLIYLMLEIIFYQKKLNKK
Sbjct: 1 MESIEVFSKNRGTENLFLVQLGNVTYSNDQIRKFLSDIPIFTSFYWICIDDIVLEINLFGKYHSPIIRSVKYDMNGKIKKDYLNFNGIHFKTYSRPWYSYLEMNCSQDFDSPCNCTGKTIQLTDIIANILNFTYSCYMTKSTEWGFEVKNKVPVTLLEHMAYGISDFGLPILVWTEKRNKIVDFVKCSTFTTGAIVYNTGQQDLHSLFRAFSKKTWILLLTVLVISILFIGMVHFCRTESYFESQSYRLLITSLSFMFVILYAYFSSVLVMLGSTKGQVKFNKISDFLADSSWRLIHIEDGITTFKRRFYDNQAFLDTYDPKKFSVPTIMEGLEKAKNGKVAXVAYISMIQHFIQLSYYNKVRYEEFDIIDPAIDSYYYAFPINSPLIWSFNKVMHSLRNRGIIDKIYQDDKTSKETIESTNVDINSIIEIYLLLMIGYMLSLIYLMLEIIFYQKKLNKK 460
BLAST of EMLSAG00000004547 vs. L. salmonis peptides
Match: EMLSAP00000012109 (pep:novel supercontig:LSalAtl2s:LSalAtl2s869:318229:331619:1 gene:EMLSAG00000012109 transcript:EMLSAT00000012109 description:"maker-LSalAtl2s869-snap-gene-2.14") HSP 1 Score: 108.612 bits (270), Expect = 6.766e-26 Identity = 71/268 (26.49%), Postives = 134/268 (50.00%), Query Frame = 0
Query: 201 QQDLHSLFRAFSKKTWILLLTVLVISILF-IGMVHFCRTESYFESQSYRLLITSLSFMFVILYAYFSSVLVMLGSTKGQVKFNKISDFLADSSWRLIHIEDGITTFKRRFYDNQAFLDTY------DPKKFSVPTIMEGLEKAKNGKVAXVAYISMIQHFIQLSYYNKVRYEEFDIIDPAIDSYYYAFPINSPLIWSFNKVMHSLRNRGIIDKI----YQDDKTSKETIESTNVDINSIIEIYLLLMIGYMLSLIYLMLEIIFYQKKL 457
D FR F+ W+++ +++ SIL+ IG+ + + Y E+ S+R L+TSL++ FV+L AY+ + M +T+ V F I+D + + W +++ E + R ++ Y DP F VP+IMEGL+KAK +V ++ + + I S+ + + +ID Y+ P++SPL SF+ + + +GI ++ ++ T + + + I + ++L+L+ LSL+ L +E Q K+
Sbjct: 5 NADYELFFRPFTDSCWVVISSIVGFSILYPIGVS--IKVKDYMETYSFRTLVTSLAYFFVLLNAYYGGAMTMFFTTEVTVPFETITDVMENPDWSVVYTEGDSFGLRSRLPRGNKDVNDYWAKVEEDPLPFVVPSIMEGLKKAKKERVVYYRDVNTVLYQISTSHDYMRDFGDLTVIDKRTIRYFCMLPLHSPLTSSFSLINIGIMEKGIRHQVFLKWFETFSTGDKEVHLIYLSIGQMSSLFLILVGAVFLSLLTLGIEFFSAQGKM 270 HSP 2 Score: 61.6178 bits (148), Expect = 1.780e-10 Identity = 54/222 (24.32%), Postives = 98/222 (44.14%), Query Frame = 0
Query: 249 LLITSLSFMFVILYAYFSSVLVMLG----STKGQVKFNKISDFLADSSWRLIHIEDGITTFKRRFYDNQAFLDTY------DPKKFSVPTIMEGLEKAKNGKVAXVAYISMIQHFIQLSYYNKVRYEEFDIIDPAIDSYYYAFPINSPLIWSFNKVMHSLRNRGIIDKI----YQDDKTSKETIESTNVDINSIIEIYLLLMIGYMLSLIYLMLEIIFYQKK 456
L I +S +F+IL L+ LG S +G K+ D + + W +I+ + + R ++ Y DP F VP+IMEGL+KAK +V ++ + + I S+ + + +ID Y P+NSPL SF+ + + GI + ++ ++ + I + ++L+L+ LSL L +E+ ++K
Sbjct: 236 LSIGQMSSLFLILVGAVFLSLLTLGIEFFSAQG-----KMMDVMKNPDWNVIYTDGDSVPLRSRLPKGNKDVNDYWAKVEKDPSPFVVPSIMEGLKKAKKERVVYHKDVNTVLYQISTSHNYMRDFGDLTVIDKKTIRYCCMLPLNSPLTSSFSLINIGIMENGIRHQAFLTWFKAFPIGDRGVDLMYLSIGQMSSLFLILVGAVFLSLFTLGIELFSAKRK 452
BLAST of EMLSAG00000004547 vs. Select Arthropod Genomes
Match: gb|KFM81344.1| (Glutamate receptor, ionotropic kainate 2, partial [Stegodyphus mimosarum]) HSP 1 Score: 55.0694 bits (131), Expect = 4.245e-7 Identity = 94/451 (20.84%), Postives = 170/451 (37.69%), Query Frame = 0
Query: 82 YLNFNGIHFK--TYSRPWYSYLEMNCSQDFDSPCNCTGKTIQLTDIIANILNFTYSCYMTKSTEWG-FEVKNKVPVTLLEHMAYGISDFGLPILVWTEKRNKIVDFVKCSTFTTGAIVYNTGQQDLHSLF---RAFSKKTWILLL---TVLVISILFIGMV--------HFCRTESYFESQSYRLL--------------------------ITSLSFMF--VILYAYFSSVLVMLGSTKGQVKFNKISDFLADSSWRLIHIEDGITT--FKRR----FYDNQAFLDTYDPKKFSVPTIMEGLEKAKNGKVAXVAYISMIQHFIQLSYYNKVRYEEFDIIDPAIDSYYYAFPINSPLIWSFNKVMHSLRN--RGIIDKIYQD--------------------DKTSKETIESTNVDINSIIEIYLLLMIGYMLSLIYLMLEIIFYQKKLNK 459
Y+ HFK T+ Y+ L S+ G + L ++ L+FTY + K + G ++ K ++ + G +D + L TE R + VDF T +I++ Q + SLF FS + W+L++ T + +S +G + H CR E + LL ITS + F +++ +Y +++ L K + D + + +G T+ FK F F+ ++ + F V + EG+EK K G A + + I+ YN R I +DS Y + K H LRN G I ++ Q+ +TSK + + + ++ +++++++G LS + E ++Q+KL +
Sbjct: 412 YMELEHSHFKVTTFLSDPYAMLR-ESSKKMTGNDRFEGYGMDLLKALSEKLHFTYEIHPVKDKKHGKYDKATKKADGMIGEIMRGEADLAIADLTITESRLEAVDFTLPFMQTGISILFKKPTQKVTSLFSFLSPFSGEVWLLVMAAYTFISLSYFLVGRLSPYEWSNPHPCRQTDLVEENVFSLLNSMWFAIGSLMQQGSDIAPTAMSTRAITSFWYFFCLIMISSYTANLAAFLTVEKLVSPIENVEDLANQEKIKYGCLANGSTSGFFKNSNMSTFQKMHKFMTKHEKEVF-VSSNTEGIEKVKKGDYAYLMEATSIE-------YNTERECNLTQIGGLLDSKGYGIAV--------KKGNHKLRNWLTGGILRLQQEGQLHTLKERWWKQKKGGGSCSQTSKSSGSVNELGLGNVGGVFVVMLLGICLSACAGVAEFFWFQRKLER 845 The following BLAST results are available for this feature:
BLAST of EMLSAG00000004547 vs. GO
Analysis Date: 2014-04-02 (Blast vs. GO) Total hits: 0
BLAST of EMLSAG00000004547 vs. C. finmarchicus
Analysis Date: 2014-05-09 (TblastN vs C. finmarchicus TSA) Total hits: 5
BLAST of EMLSAG00000004547 vs. L. salmonis peptides
Analysis Date: 2014-05-10 (Blastp vs. self) Total hits: 2
BLAST of EMLSAG00000004547 vs. SwissProt
Analysis Date: 2017-02-10 (Blastp vs. SwissProt) Total hits: 0
BLAST of EMLSAG00000004547 vs. Select Arthropod Genomes
Analysis Date: 2017-02-20 (Blastp vs. Selected Arthropods) Total hits: 1
BLAST of EMLSAG00000004547 vs. nr
Analysis Date: 2017-02-20 (Blastp vs. NR (2/2017)) Total hits: 0
BLAST of EMLSAG00000004547 vs. Tigriopus kingsejongenis genes
Analysis Date: 2018-04-18 (Blastp vs. Tigriopus kingsejongensis proteins) Total hits: 0
Alignments
The following features are aligned
Analyses
This gene is derived from or has results from the following analyses
Properties
Cross References
External references for this gene
Relationships
The following mRNA feature(s) are a part of this gene:
Sequences
The following sequences are available for this feature:
gene from alignment at LSalAtl2s237:687140..697956+ Legend: mRNA Hold the cursor over a type above to highlight its positions in the sequence below.>EMLSAG00000004547-687313 ID=EMLSAG00000004547-687313|Name=EMLSAG00000004547|organism=Lepeophtheirus salmonis|type=gene|length=10817bp|location=Sequence derived from alignment at LSalAtl2s237:687140..697956+ (Lepeophtheirus salmonis)back to top Add to Basket
|
