EMLSAG00000005955, EMLSAG00000005955-688721 (gene) Lepeophtheirus salmonis
Overview
Associated RNAi Experiments
Nothing found Homology
BLAST of EMLSAG00000005955 vs. C. finmarchicus
Match: gi|592779045|gb|GAXK01175523.1| (TSA: Calanus finmarchicus comp2654_c1_seq1 transcribed RNA sequence) HSP 1 Score: 33.8834 bits (76), Expect = 1.820e-2 Identity = 17/49 (34.69%), Postives = 27/49 (55.10%), Query Frame = 0 Query: 12 KKIGPVEDVHIKEKDQVFETMRNAEDTEGFMRRLNGTTIPGQDVKMEIA 60 ++ G V D + K F T E+ + LNGTT+ GQ++K++IA Sbjct: 286 ERFGSVTDAYNSGKGYAFITYETKEEADQAKEMLNGTTVCGQEIKVDIA 432
BLAST of EMLSAG00000005955 vs. C. finmarchicus
Match: gi|592779046|gb|GAXK01175522.1| (TSA: Calanus finmarchicus comp2654_c0_seq1 transcribed RNA sequence) HSP 1 Score: 33.8834 bits (76), Expect = 1.868e-2 Identity = 17/49 (34.69%), Postives = 27/49 (55.10%), Query Frame = 0 Query: 12 KKIGPVEDVHIKEKDQVFETMRNAEDTEGFMRRLNGTTIPGQDVKMEIA 60 ++ G V D + K F T E+ + LNGTT+ GQ++K++IA Sbjct: 223 ERFGSVTDAYNSGKGYAFITYETKEEADQAKEMLNGTTVCGQEIKVDIA 369
BLAST of EMLSAG00000005955 vs. C. finmarchicus
Match: gi|592948910|gb|GAXK01009643.1| (TSA: Calanus finmarchicus comp1243881_c0_seq3 transcribed RNA sequence) HSP 1 Score: 28.1054 bits (61), Expect = 1.501e+0 Identity = 17/57 (29.82%), Postives = 27/57 (47.37%), Query Frame = 0 Query: 9 LLCKKIGPVEDVHIKE---KDQVFE----------TMRNAEDTEGFMRRLNGTTIPG 52 L K+ GPV+ + +++ +DQ+ + + NAE E FMR TT P Sbjct: 132 FLDKEEGPVQTLSVRQQKLRDQILKQRQQQEQEIANILNAETVESFMRTEQATTTPS 302
BLAST of EMLSAG00000005955 vs. C. finmarchicus
Match: gi|592786370|gb|GAXK01168198.1| (TSA: Calanus finmarchicus comp1304_c3_seq2 transcribed RNA sequence) HSP 1 Score: 25.7942 bits (55), Expect = 9.120e+0 Identity = 17/57 (29.82%), Postives = 27/57 (47.37%), Query Frame = 0 Query: 10 LCKKIGPVEDVHI-------KEKDQVFETMRNAEDTEGFMRRLNGTTIPGQDVKMEI 59 + +K G V DV I + + F + +D E M LNG T G+D+++ I Sbjct: 149 VFEKYGEVGDVFIPSDRETGRTRGFAFVRFYDKKDAEDAMEELNGRTFEGRDLRVSI 319
BLAST of EMLSAG00000005955 vs. L. salmonis peptides
Match: EMLSAP00000005955 (pep:novel supercontig:LSalAtl2s:LSalAtl2s321:630816:639965:-1 gene:EMLSAG00000005955 transcript:EMLSAT00000005955 description:"snap_masked-LSalAtl2s321-processed-gene-6.7") HSP 1 Score: 130.183 bits (326), Expect = 4.320e-41 Identity = 61/61 (100.00%), Postives = 61/61 (100.00%), Query Frame = 0 Query: 1 MDSQHRYSLLCKKIGPVEDVHIKEKDQVFETMRNAEDTEGFMRRLNGTTIPGQDVKMEIAH 61 MDSQHRYSLLCKKIGPVEDVHIKEKDQVFETMRNAEDTEGFMRRLNGTTIPGQDVKMEIAH Sbjct: 1 MDSQHRYSLLCKKIGPVEDVHIKEKDQVFETMRNAEDTEGFMRRLNGTTIPGQDVKMEIAH 61
BLAST of EMLSAG00000005955 vs. L. salmonis peptides
Match: EMLSAP00000002557 (pep:novel supercontig:LSalAtl2s:LSalAtl2s1510:50770:51213:1 gene:EMLSAG00000002557 transcript:EMLSAT00000002557 description:"augustus_masked-LSalAtl2s1510-processed-gene-0.5") HSP 1 Score: 71.633 bits (174), Expect = 1.792e-17 Identity = 34/49 (69.39%), Postives = 39/49 (79.59%), Query Frame = 0 Query: 13 KIGPVEDVHIKEKDQVFETMRNAEDTEGFMRRLNGTTIPGQDVKMEIAH 61 KIGPV DVHI EK F TM +AED EG MR+LNGTT+ GQ+VK+EIAH Sbjct: 29 KIGPVADVHITEKGXAFVTMMSAEDAEGAMRKLNGTTVHGQEVKVEIAH 77
BLAST of EMLSAG00000005955 vs. L. salmonis peptides
Match: EMLSAP00000007347 (pep:novel supercontig:LSalAtl2s:LSalAtl2s4162:3600:4079:1 gene:EMLSAG00000007347 transcript:EMLSAT00000007347 description:"augustus_masked-LSalAtl2s4162-processed-gene-0.0") HSP 1 Score: 62.3882 bits (150), Expect = 4.789e-14 Identity = 29/49 (59.18%), Postives = 37/49 (75.51%), Query Frame = 0 Query: 13 KIGPVEDVHIKEKDQVFETMRNAEDTEGFMRRLNGTTIPGQDVKMEIAH 61 KIGPV DV+I EK F TM N+ED + R+LNGTT+ GQ++K+EIAH Sbjct: 29 KIGPVTDVYITEKGYAFVTMTNSEDADDAARKLNGTTVDGQELKVEIAH 77
BLAST of EMLSAG00000005955 vs. L. salmonis peptides
Match: EMLSAP00000002556 (pep:novel supercontig:LSalAtl2s:LSalAtl2s1510:24535:24822:1 gene:EMLSAG00000002556 transcript:EMLSAT00000002556 description:"augustus_masked-LSalAtl2s1510-processed-gene-0.4") HSP 1 Score: 60.077 bits (144), Expect = 1.606e-13 Identity = 28/49 (57.14%), Postives = 36/49 (73.47%), Query Frame = 0 Query: 12 KKIGPVEDVHIKEKDQVFETMRNAEDTEGFMRRLNGTTIPGQDVKMEIA 60 KIGPV DV+I EK F TM N+ED + R+LNGTT+ GQ++K+EIA Sbjct: 28 SKIGPVTDVYITEKGYAFVTMTNSEDADDAARKLNGTTVDGQELKVEIA 76
BLAST of EMLSAG00000005955 vs. L. salmonis peptides
Match: EMLSAP00000000098 (pep:novel supercontig:LSalAtl2s:LSalAtl2s1017:34509:34836:-1 gene:EMLSAG00000000098 transcript:EMLSAT00000000098 description:"snap_masked-LSalAtl2s1017-processed-gene-0.1") HSP 1 Score: 50.0618 bits (118), Expect = 6.298e-10 Identity = 22/45 (48.89%), Postives = 31/45 (68.89%), Query Frame = 0 Query: 15 GPVEDVHIKEKDQVFETMRNAEDTEGFMRRLNGTTIPGQDVKMEI 59 PV ++HI EKD VF T+ N+ED E M +L T + GQ+V+M+I Sbjct: 19 NPVANIHIIEKDNVFVTLMNSEDAESAMYKLKSTPVLGQEVEMDI 63
BLAST of EMLSAG00000005955 vs. nr
Match: gi|225711820|gb|ACO11756.1| (RNA-binding protein 3 [Lepeophtheirus salmonis] >gi|225712198|gb|ACO11945.1| RNA-binding protein 3 [Lepeophtheirus salmonis]) HSP 1 Score: 63.1586 bits (152), Expect = 5.210e-11 Identity = 29/50 (58.00%), Postives = 37/50 (74.00%), Query Frame = 0 Query: 12 KKIGPVEDVHIKEKDQVFETMRNAEDTEGFMRRLNGTTIPGQDVKMEIAH 61 KIGPV DV+I EK F TM N+ED + R+LNGTT+ GQ++K+EIAH Sbjct: 28 SKIGPVTDVYITEKGYAFVTMTNSEDADDAARKLNGTTVDGQELKVEIAH 77 The following BLAST results are available for this feature:
BLAST of EMLSAG00000005955 vs. GO
Analysis Date: 2014-04-02 (Blast vs. GO) Total hits: 0
BLAST of EMLSAG00000005955 vs. C. finmarchicus
Analysis Date: 2014-05-09 (TblastN vs C. finmarchicus TSA) Total hits: 4
BLAST of EMLSAG00000005955 vs. L. salmonis peptides
Analysis Date: 2014-05-10 (Blastp vs. self) Total hits: 5
BLAST of EMLSAG00000005955 vs. SwissProt
Analysis Date: 2017-02-10 (Blastp vs. SwissProt) Total hits: 0
BLAST of EMLSAG00000005955 vs. Select Arthropod Genomes
Analysis Date: 2017-02-20 (Blastp vs. Selected Arthropods) Total hits: 0
BLAST of EMLSAG00000005955 vs. nr
Analysis Date: 2017-02-20 (Blastp vs. NR (2/2017)) Total hits: 1
BLAST of EMLSAG00000005955 vs. Tigriopus kingsejongenis genes
Analysis Date: 2018-04-18 (Blastp vs. Tigriopus kingsejongensis proteins) Total hits: 0
Alignments
The following features are aligned
Analyses
This gene is derived from or has results from the following analyses
Properties
Cross References
External references for this gene
Relationships
The following mRNA feature(s) are a part of this gene:
Sequences
The following sequences are available for this feature:
gene from alignment at LSalAtl2s321:630816..639965- Legend: mRNA Hold the cursor over a type above to highlight its positions in the sequence below.>EMLSAG00000005955-688721 ID=EMLSAG00000005955-688721|Name=EMLSAG00000005955|organism=Lepeophtheirus salmonis|type=gene|length=9150bp|location=Sequence derived from alignment at LSalAtl2s321:630816..639965- (Lepeophtheirus salmonis)back to top Add to Basket
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