EMLSAG00000006886, EMLSAG00000006886-689652 (gene) Lepeophtheirus salmonis
Overview
Associated RNAi Experiments
Nothing found Homology
BLAST of EMLSAG00000006886 vs. C. finmarchicus
Match: gi|592778762|gb|GAXK01175806.1| (TSA: Calanus finmarchicus comp3569_c6_seq1 transcribed RNA sequence) HSP 1 Score: 162.54 bits (410), Expect = 3.485e-41 Identity = 92/177 (51.98%), Postives = 117/177 (66.10%), Query Frame = 0 Query: 184 VNSIVNVKLPMTNPNGRRPIVELVMHQNGKYQPIKFSNNMQVSEMISKTIFERATTLQRTLYQKARKVPRVNGRPIFLAINPTTQNNRGQLNALFSSAQLXXXXXXXXXXXXXXXXXXXXXXQVSILVRSQSSPKPVLLNVPRKIAIKVKAGTTLSFSASSDQKYTVIDSKIHPPVN 360 V V V+LPM + NG+RP+VELVM NGKYQPIKF+NN QV+E I K +F++A +++TLYQ++ +VP++ + +FLAINPT R +SS Q SDQVSILVR VLLNVPR +A+KVK GTTLSFSAS+DQKYTVID+K+HPPV Sbjct: 4611 VQGFVKVRLPMPSTNGKRPVVELVMLTNGKYQPIKFTNNRQVTESIPKRLFDQANLMRKTLYQRSVQVPKIGTKQVFLAINPTPGGVRP-----YSSPQQ------------PPRPVQQTSDQVSILVRPAGGGNAVLLNVPRSVALKVKVGTTLSFSASNDQKYTVIDNKMHPPVG 5090 HSP 2 Score: 62.003 bits (149), Expect = 2.995e-9 Identity = 29/70 (41.43%), Postives = 41/70 (58.57%), Query Frame = 0 Query: 424 LEINPCTPYCPGVTGFPEVECKGCQSLFHAQCVGLLNSRSMS---NFYCKMCSRTPTSIPRSTPQVINLD 490 PC+P+CPGVTG PE+EC C SLFH +CV + + + +F CK C+ + S +VI+LD Sbjct: 5322 FSFTPCSPFCPGVTGIPELECTQCHSLFHPKCVNIPQWKVANIQHSFKCKRCAGS-----SSRTEVIDLD 5516 HSP 3 Score: 58.151 bits (139), Expect = 5.462e-8 Identity = 33/80 (41.25%), Postives = 49/80 (61.25%), Query Frame = 0 Query: 1 MGIFTSLGGESH----PPTPPPLRAVKLTPRETTEKIKDALKKVKLQ----ADKLSLEREQHM-KDNLASHDSAIRKCKN 71 +G++T L E PPTPPPLRA++LT +TT+ I KK++ D++++ + + DNLASHD A+RK KN Sbjct: 4245 LGVYTELANELEGLKCPPTPPPLRALRLTSHKTTDSIAQKYKKIREGLPDPLDRITIGNKDLLGSDNLASHDLAVRKYKN 4484
BLAST of EMLSAG00000006886 vs. C. finmarchicus
Match: gi|592754820|gb|GAXK01199593.1| (TSA: Calanus finmarchicus comp181039_c0_seq3 transcribed RNA sequence) HSP 1 Score: 59.6918 bits (143), Expect = 1.478e-8 Identity = 25/48 (52.08%), Postives = 30/48 (62.50%), Query Frame = 0 Query: 428 PCTPYCPGVTGFPEVECKGCQSLFHAQCVGL---LNSRSMSNFYCKMC 472 PC+ +CPGV+GFP + C C LFH +CVGL L S S FYC C Sbjct: 2329 PCSIHCPGVSGFPSLSCTSCHCLFHPKCVGLPPSLGSSSHHEFYCNDC 2472 HSP 2 Score: 53.5286 bits (127), Expect = 1.468e-6 Identity = 22/50 (44.00%), Postives = 30/50 (60.00%), Query Frame = 0 Query: 104 LPCTLHCPGSYGLLPNLTCVSCQCLFHARCQGM--TQANRLFKTFKCKAC 151 LPC++HCPG G P+L+C SC CLFH +C G+ + + F C C Sbjct: 2326 LPCSIHCPGVSGF-PSLSCTSCHCLFHPKCVGLPPSLGSSSHHEFYCNDC 2472
BLAST of EMLSAG00000006886 vs. C. finmarchicus
Match: gi|592754821|gb|GAXK01199592.1| (TSA: Calanus finmarchicus comp181039_c0_seq2 transcribed RNA sequence) HSP 1 Score: 59.6918 bits (143), Expect = 1.508e-8 Identity = 25/48 (52.08%), Postives = 30/48 (62.50%), Query Frame = 0 Query: 428 PCTPYCPGVTGFPEVECKGCQSLFHAQCVGL---LNSRSMSNFYCKMC 472 PC+ +CPGV+GFP + C C LFH +CVGL L S S FYC C Sbjct: 2894 PCSIHCPGVSGFPSLSCTSCHCLFHPKCVGLPPSLGSSSHHEFYCNDC 3037 HSP 2 Score: 53.5286 bits (127), Expect = 1.494e-6 Identity = 22/50 (44.00%), Postives = 30/50 (60.00%), Query Frame = 0 Query: 104 LPCTLHCPGSYGLLPNLTCVSCQCLFHARCQGM--TQANRLFKTFKCKAC 151 LPC++HCPG G P+L+C SC CLFH +C G+ + + F C C Sbjct: 2891 LPCSIHCPGVSGF-PSLSCTSCHCLFHPKCVGLPPSLGSSSHHEFYCNDC 3037
BLAST of EMLSAG00000006886 vs. C. finmarchicus
Match: gi|592754822|gb|GAXK01199591.1| (TSA: Calanus finmarchicus comp181039_c0_seq1 transcribed RNA sequence) HSP 1 Score: 59.6918 bits (143), Expect = 1.509e-8 Identity = 25/48 (52.08%), Postives = 30/48 (62.50%), Query Frame = 0 Query: 428 PCTPYCPGVTGFPEVECKGCQSLFHAQCVGL---LNSRSMSNFYCKMC 472 PC+ +CPGV+GFP + C C LFH +CVGL L S S FYC C Sbjct: 2912 PCSIHCPGVSGFPSLSCTSCHCLFHPKCVGLPPSLGSSSHHEFYCNDC 3055 HSP 2 Score: 53.5286 bits (127), Expect = 1.495e-6 Identity = 22/50 (44.00%), Postives = 30/50 (60.00%), Query Frame = 0 Query: 104 LPCTLHCPGSYGLLPNLTCVSCQCLFHARCQGM--TQANRLFKTFKCKAC 151 LPC++HCPG G P+L+C SC CLFH +C G+ + + F C C Sbjct: 2909 LPCSIHCPGVSGF-PSLSCTSCHCLFHPKCVGLPPSLGSSSHHEFYCNDC 3055
BLAST of EMLSAG00000006886 vs. C. finmarchicus
Match: gi|592840033|gb|GAXK01117511.1| (TSA: Calanus finmarchicus comp606943_c0_seq1 transcribed RNA sequence) HSP 1 Score: 36.965 bits (84), Expect = 1.853e-1 Identity = 15/35 (42.86%), Postives = 22/35 (62.86%), Query Frame = 0 Query: 440 PEVECKG-CQSLFHAQCVGL-LNSRSMSNFYCKMC 472 P + C G CQ +H CVG+ N RS++ +YC+ C Sbjct: 1322 PMIGCDGPCQDWYHFDCVGIPQNFRSIAEWYCEEC 1426
BLAST of EMLSAG00000006886 vs. C. finmarchicus
Match: gi|592877181|gb|GAXK01080538.1| (TSA: Calanus finmarchicus comp6560923_c0_seq1 transcribed RNA sequence) HSP 1 Score: 32.7278 bits (73), Expect = 1.634e+0 Identity = 13/37 (35.14%), Postives = 22/37 (59.46%), Query Frame = 0 Query: 442 VECKGCQSLFHAQCVGLLNSRSMSNFYCKMCSRTPTS 478 ++C GC S H + L + R+ + F+CK+CS T + Sbjct: 196 IKCDGCDSYTHKKNACLRDVRNKNQFFCKVCSFTENT 306
BLAST of EMLSAG00000006886 vs. C. finmarchicus
Match: gi|592829536|gb|GAXK01128008.1| (TSA: Calanus finmarchicus comp3505374_c0_seq1 transcribed RNA sequence) HSP 1 Score: 30.8018 bits (68), Expect = 7.060e+0 Identity = 16/38 (42.11%), Postives = 21/38 (55.26%), Query Frame = 0 Query: 43 QADKLSLEREQHMKDNLASHDSAIRKCKNIPVERKYSG 80 + DKL+L+ E H + SHD+ I K N P YSG Sbjct: 186 EVDKLALQNESHSNNQSGSHDTEIPKKLNTP---SYSG 290
BLAST of EMLSAG00000006886 vs. L. salmonis peptides
Match: EMLSAP00000006886 (pep:novel supercontig:LSalAtl2s:LSalAtl2s389:81769:89252:1 gene:EMLSAG00000006886 transcript:EMLSAT00000006886 description:"maker-LSalAtl2s389-augustus-gene-0.16") HSP 1 Score: 998.808 bits (2581), Expect = 0.000e+0 Identity = 490/490 (100.00%), Postives = 490/490 (100.00%), Query Frame = 0 Query: 1 MGIFTSLGGESHPPTPPPLRAVKLTPRETTEKIKDALKKVKLQADKLSLEREQHMKDNLASHDSAIRKCKNIPVERKYSGFNYMNLQQNRIKRSPLDHGSKKNLPCTLHCPGSYGLLPNLTCVSCQCLFHARCQGMTQANRLFKTFKCKACSLLSNRNSNPLASSSHSSPSSSTPVRSFTVGQVNSIVNVKLPMTNPNGRRPIVELVMHQNGKYQPIKFSNNMQVSEMISKTIFERATTLQRTLYQKARKVPRVNGRPIFLAINPTTQNNRGQLNALFSSAQLSRQSNSVPSLVSSSTSEVHKSDQVSILVRSQSSPKPVLLNVPRKIAIKVKAGTTLSFSASSDQKYTVIDSKIHPPVNSSKRSATSSTTTTNSVPVPKRRAPDLTVYRGITISRITDKRPPQPTRRIPPPAPAAGHKVSSELEINPCTPYCPGVTGFPEVECKGCQSLFHAQCVGLLNSRSMSNFYCKMCSRTPTSIPRSTPQVINLD 490 MGIFTSLGGESHPPTPPPLRAVKLTPRETTEKIKDALKKVKLQADKLSLEREQHMKDNLASHDSAIRKCKNIPVERKYSGFNYMNLQQNRIKRSPLDHGSKKNLPCTLHCPGSYGLLPNLTCVSCQCLFHARCQGMTQANRLFKTFKCKACSLLSNRNSNPLASSSHSSPSSSTPVRSFTVGQVNSIVNVKLPMTNPNGRRPIVELVMHQNGKYQPIKFSNNMQVSEMISKTIFERATTLQRTLYQKARKVPRVNGRPIFLAINPTTQNNRGQLNALFSSAQLSRQSNSVPSLVSSSTSEVHKSDQVSILVRSQSSPKPVLLNVPRKIAIKVKAGTTLSFSASSDQKYTVIDSKIHPPVNSSKRSATSSTTTTNSVPVPKRRAPDLTVYRGITISRITDKRPPQPTRRIPPPAPAAGHKVSSELEINPCTPYCPGVTGFPEVECKGCQSLFHAQCVGLLNSRSMSNFYCKMCSRTPTSIPRSTPQVINLD Sbjct: 1 MGIFTSLGGESHPPTPPPLRAVKLTPRETTEKIKDALKKVKLQADKLSLEREQHMKDNLASHDSAIRKCKNIPVERKYSGFNYMNLQQNRIKRSPLDHGSKKNLPCTLHCPGSYGLLPNLTCVSCQCLFHARCQGMTQANRLFKTFKCKACSLLSNRNSNPLASSSHSSPSSSTPVRSFTVGQVNSIVNVKLPMTNPNGRRPIVELVMHQNGKYQPIKFSNNMQVSEMISKTIFERATTLQRTLYQKARKVPRVNGRPIFLAINPTTQNNRGQLNALFSSAQLSRQSNSVPSLVSSSTSEVHKSDQVSILVRSQSSPKPVLLNVPRKIAIKVKAGTTLSFSASSDQKYTVIDSKIHPPVNSSKRSATSSTTTTNSVPVPKRRAPDLTVYRGITISRITDKRPPQPTRRIPPPAPAAGHKVSSELEINPCTPYCPGVTGFPEVECKGCQSLFHAQCVGLLNSRSMSNFYCKMCSRTPTSIPRSTPQVINLD 490
BLAST of EMLSAG00000006886 vs. Tigriopus kingsejongenis genes
Match: snap_masked-scaffold246_size239296-processed-gene-0.1 (protein:Tk01923 transcript:snap_masked-scaffold246_size239296-processed-gene-0.1-mRNA-1 annotation:"PREDICTED: uncharacterized protein LOC100571019 partial") HSP 1 Score: 247.669 bits (631), Expect = 2.314e-73 Identity = 167/391 (42.71%), Postives = 208/391 (53.20%), Query Frame = 0 Query: 188 VNVKLPMTNPNGRRPIVELVMHQNGKYQPIKFSNNMQVSEMISKTIFERATTLQRTLYQKARKVPRVNGRPIFLAINPTTQNNRGQLNALFSSAQLSRQSNSVPSLVSSSTSEVHK---------SDQVSILVRSQSS--PKPVLLNVPRKIAIKVKAGTTLSFSASSDQKYTVIDSKIHPPV------NSSKRSATSSTTTTN----SVPVPKRRAPDLT--------------------VYRGITISRITDKRPPQPTRRIP----------------------PP----APAA---------------GHKVSSELEINPCTPYCPGVTGFPEVECKGCQSLFHAQCVG---LLNSRSMSNFYCKMCSRTPTS---IPRSTPQVINLD 490 V VKLPM NGRRP+VELVM QNGKY PIKFSNNMQV+E I K++FE+A +++T YQ A +VP+V +PIFLAINP++ L A A + P + +++ H+ SDQVSILVR Q KPVLLNVPR +A+KVK GTTLSFSAS+DQKY VIDSKIHPPV N S RS S + + S+P+ + P T + + ++I I++K P P P PP AP A G S LE PCTPYCPGV GFPE+EC+ CQSLFHA+CVG L ++ NF C+MC T TS + PQ+INLD Sbjct: 486 VKVKLPMPIINGRRPVVELVMEQNGKYIPIKFSNNMQVTEAIPKSLFEKANAMRKTFYQNASQVPKVGNKPIFLAINPSSTGVNQLLGAPPQRAHNQISTRPRPQIQPPASASSHRKVAPAGLPNSDQVSILVRPQKGFPTKPVLLNVPRSVALKVKPGTTLSFSASNDQKYVVIDSKIHPPVGVLSAANGSGRSVGSKPSGGHMPNKSLPITRLNGPGATFPQNSFRRNANAGVPNGIPNLPKSVSIRPISNK--PSPATSFPRRINMPTSGPVVRAGMRRPAGAPPSSVHAPVAKKPMRPSASSSVLSSGEIGKSPLE--PCTPYCPGVQGFPELECRSCQSLFHAKCVGINPLALNKVKGNFRCRMCLPTRTSNSATAANNPQIINLD 872 HSP 2 Score: 74.3294 bits (181), Expect = 3.664e-14 Identity = 35/85 (41.18%), Postives = 55/85 (64.71%), Query Frame = 0 Query: 1 MGIFTSLGGESHPPTPPPLRAVKLTPRETTEKIKDALKKVKLQADKLSLEREQHMKDNLASHDSAIRKCKNIPVERKYSGFNYMN 85 +G++T LGG S P TPPPLRAV+LT T KI A ++K +A ++ ++RE +K++L SHD AI++ +N + F+ +N Sbjct: 370 LGVYTELGGRSSPVTPPPLRAVRLTQAATATKILKAYGQIKAEAAQVRVQREPELKEDLVSHDLAIKRFRNFVQHANRNNFSRLN 454 HSP 3 Score: 56.6102 bits (135), Expect = 1.017e-8 Identity = 31/72 (43.06%), Postives = 40/72 (55.56%), Query Frame = 0 Query: 91 IKRSPLDHGSKKNLPCTLHCPGSYGLLPNLTCVSCQCLFHARCQGMT--QANRLFKTFKCKACSLLSNRNSN 160 I +SPL+ PCT +CPG G P L C SCQ LFHA+C G+ N++ F+C+ C L R SN Sbjct: 797 IGKSPLE-------PCTPYCPGVQGF-PELECRSCQSLFHAKCVGINPLALNKVKGNFRCRMC--LPTRTSN 858 The following BLAST results are available for this feature:
BLAST of EMLSAG00000006886 vs. GO
Analysis Date: 2014-04-02 (Blast vs. GO) Total hits: 0
BLAST of EMLSAG00000006886 vs. C. finmarchicus
Analysis Date: 2014-05-09 (TblastN vs C. finmarchicus TSA) Total hits: 7
BLAST of EMLSAG00000006886 vs. L. salmonis peptides
Analysis Date: 2014-05-10 (Blastp vs. self) Total hits: 1
BLAST of EMLSAG00000006886 vs. SwissProt
Analysis Date: 2017-02-10 (Blastp vs. SwissProt) Total hits: 0
BLAST of EMLSAG00000006886 vs. Select Arthropod Genomes
Analysis Date: 2017-02-20 (Blastp vs. Selected Arthropods) Total hits: 0
BLAST of EMLSAG00000006886 vs. nr
Analysis Date: 2017-02-20 (Blastp vs. NR (2/2017)) Total hits: 0
BLAST of EMLSAG00000006886 vs. Tigriopus kingsejongenis genes
Analysis Date: 2018-04-18 (Blastp vs. Tigriopus kingsejongensis proteins) Total hits: 1
Alignments
The following features are aligned
Analyses
This gene is derived from or has results from the following analyses
Properties
Cross References
External references for this gene
Relationships
The following mRNA feature(s) are a part of this gene:
Sequences
The following sequences are available for this feature:
gene from alignment at LSalAtl2s389:81769..89252+ Legend: mRNA Hold the cursor over a type above to highlight its positions in the sequence below.>EMLSAG00000006886-689652 ID=EMLSAG00000006886-689652|Name=EMLSAG00000006886|organism=Lepeophtheirus salmonis|type=gene|length=7484bp|location=Sequence derived from alignment at LSalAtl2s389:81769..89252+ (Lepeophtheirus salmonis)back to top Add to Basket
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