EMLSAG00000007327, EMLSAG00000007327-690093 (gene) Lepeophtheirus salmonis

Overview
NameEMLSAG00000007327
Unique NameEMLSAG00000007327-690093
Typegene
OrganismLepeophtheirus salmonis (salmon louse)
Associated RNAi Experiments
Table of all RNA interference experiments conducted using this feature, grouped by Phenotype CV: no visible phenotype
Gallery Image Title Gene or target symbol Sex/Stage Phenotype Datesort descending
U F165 UN49_7327 female
  1. PreAdult2
  2. Adult
 -Missing-
no visible phenotype 		03.12.2014 - 13:49
14.01.2015 - 00:00
Homology
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BLAST of EMLSAG00000007327 vs. C. finmarchicus
Match: gi|592823662|gb|GAXK01130906.1| (TSA: Calanus finmarchicus comp179071_c0_seq4 transcribed RNA sequence)

HSP 1 Score: 36.965 bits (84), Expect = 3.558e-3
Identity = 18/54 (33.33%), Postives = 31/54 (57.41%), Query Frame = 0 
Query:   38 FTPYPVRIVS---GEQLSTKLVLNVLKEIDGDLEVELKMAKKGALFNIPIPCIE 88
            F+PYP+ + S   G+       ++V+KEI  D  +E+ + + G   NI +PCI+
Sbjct:   53 FSPYPIVLSSLLPGKTYDVTFAIDVIKEIPEDATIEVMVERVGFYGNIQLPCIQ 214
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BLAST of EMLSAG00000007327 vs. C. finmarchicus
Match: gi|592823664|gb|GAXK01130904.1| (TSA: Calanus finmarchicus comp179071_c0_seq2 transcribed RNA sequence)

HSP 1 Score: 36.965 bits (84), Expect = 6.169e-3
Identity = 18/54 (33.33%), Postives = 31/54 (57.41%), Query Frame = 0 
Query:   38 FTPYPVRIVS---GEQLSTKLVLNVLKEIDGDLEVELKMAKKGALFNIPIPCIE 88
            F+PYP+ + S   G+       ++V+KEI  D  +E+ + + G   NI +PCI+
Sbjct:   53 FSPYPIVLSSLLPGKTYDVTFAIDVIKEIPEDATIEVMVERVGFYGNIQLPCIQ 214
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BLAST of EMLSAG00000007327 vs. C. finmarchicus
Match: gi|592820211|gb|GAXK01134357.1| (TSA: Calanus finmarchicus comp92639_c0_seq1 transcribed RNA sequence)

HSP 1 Score: 30.4166 bits (67), Expect = 1.935e+0
Identity = 16/40 (40.00%), Postives = 26/40 (65.00%), Query Frame = 0 
Query:   24 DTC--VEDSAATLVTDFTPYPVRIVSGEQLSTKLVLNVLK 61
            D C  + +++ +LVT    +PVR +S   L TKL+L+VL+
Sbjct:  493 DLCPLIRNNSLSLVTPLGRFPVRSLSPPSLRTKLILSVLQ 612
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BLAST of EMLSAG00000007327 vs. L. salmonis peptides
Match: EMLSAP00000007327 (pep:novel supercontig:LSalAtl2s:LSalAtl2s412:163825:164621:1 gene:EMLSAG00000007327 transcript:EMLSAT00000007327 description:"maker-LSalAtl2s412-augustus-gene-1.19")

HSP 1 Score: 220.32 bits (560), Expect = 3.632e-74
Identity = 110/110 (100.00%), Postives = 110/110 (100.00%), Query Frame = 0 
Query:    1 MKFIAVLGLLIAGASALSVEIPWDTCVEDSAATLVTDFTPYPVRIVSGEQLSTKLVLNVLKEIDGDLEVELKMAKKGALFNIPIPCIEISEGFFLGSCKYKVAELLEKYG 110
            MKFIAVLGLLIAGASALSVEIPWDTCVEDSAATLVTDFTPYPVRIVSGEQLSTKLVLNVLKEIDGDLEVELKMAKKGALFNIPIPCIEISEGFFLGSCKYKVAELLEKYG
Sbjct:    1 MKFIAVLGLLIAGASALSVEIPWDTCVEDSAATLVTDFTPYPVRIVSGEQLSTKLVLNVLKEIDGDLEVELKMAKKGALFNIPIPCIEISEGFFLGSCKYKVAELLEKYG 110
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BLAST of EMLSAG00000007327 vs. L. salmonis peptides
Match: EMLSAP00000008513 (pep:novel supercontig:LSalAtl2s:LSalAtl2s524:35981:36548:-1 gene:EMLSAG00000008513 transcript:EMLSAT00000008513 description:"maker-LSalAtl2s524-augustus-gene-0.17")

HSP 1 Score: 92.4337 bits (228), Expect = 4.272e-24
Identity = 47/109 (43.12%), Postives = 68/109 (62.39%), Query Frame = 0 
Query:    1 MKFIAVLGLLIAGASALSVEIPWDTCVEDSAATLVTDFTPYPVRIVSGEQLSTKLVLNVLKEIDGDLEVELKMAKKGALFNIPIPCIEISEGFFLGSCKYKVAELLEKY 109
            MK IAVL LL    S   +E  W++C  D+        +PYP+ +VSG  L  K + ++ K++DGD++VE+K+ KKG + +IPIPCIE   G  LG C YK+ E++ KY
Sbjct:    1 MKIIAVLALLFIAVSGEDLE--WESCNPDNWGEGNIXLSPYPLPVVSGTSLDVKALFDLHKDLDGDVDVEIKLVKKG-IVSIPIPCIESPSGLHLGXCSYKLEEIVTKY 106
[Close]
BLAST of EMLSAG00000007327 vs. L. salmonis peptides
Match: EMLSAP00000005216 (pep:novel supercontig:LSalAtl2s:LSalAtl2s27639:2:371:-1 gene:EMLSAG00000005216 transcript:EMLSAT00000005216 description:"maker-LSalAtl2s27639-augustus-gene-0.2")

HSP 1 Score: 82.4185 bits (202), Expect = 6.124e-21
Identity = 42/102 (41.18%), Postives = 63/102 (61.76%), Query Frame = 0 
Query:    5 AVLGLLIAGASALSVEIPWDTCVEDSAATLVTDFTPYPVRIVSGEQLSTKLVLNVLKEIDGDLEVELKMAKKGALFNIPIPCIEISEGFFLGSCKYKVAELL 106
            A+  LL    S   +E  W++C  D+        +PYP+ +VSG  L  K + ++ K++DGD++VELK+ KKG + +IPIPCIE   G  LGSC YK+ E++
Sbjct:    1 AIFALLFIAVSGEDLE--WESCNPDNLGEGDIALSPYPLPVVSGTSLDLKALFDLHKDLDGDVDVELKLVKKG-IVSIPIPCIESPSGLHLGSCSYKLEEIV 99
[Close]
BLAST of EMLSAG00000007327 vs. L. salmonis peptides
Match: EMLSAP00000002046 (pep:novel supercontig:LSalAtl2s:LSalAtl2s1371:31599:32602:1 gene:EMLSAG00000002046 transcript:EMLSAT00000002046 description:"maker-LSalAtl2s1371-augustus-gene-0.2")

HSP 1 Score: 83.1889 bits (204), Expect = 2.012e-20
Identity = 43/111 (38.74%), Postives = 73/111 (65.77%), Query Frame = 0 
Query:    1 MKFIAVLGLLIAGASALSV--EIPWDTCVEDSAATLVTDFTPYPVRIVSGEQLSTKLVLNVLKEIDGDLEVELKMAKKGALFNIPIPCIEISEGFFLGSCKYKVAELLEKY 109
            + F A+L ++++ AS+L +  ++ ++ C  D+      D  PYP+ +V G Q+  K +  + K++DGD++V++KM K G + +IPIPC+EI  G FLGSC YK+ E++ KY
Sbjct:    5 LSFCALL-IVVSSASSLKLKDDLGFEPCNLDNWGEGNIDVNPYPLPVVEGTQVDIKALFQLDKKLDGDVDVKIKMVKTG-IISIPIPCLEIRPGVFLGSCDYKLEEIITKY 113
[Close]
BLAST of EMLSAG00000007327 vs. nr
Match: gi|155966306|gb|ABU41106.1| (hypothetical protein [Lepeophtheirus salmonis])

HSP 1 Score: 92.8189 bits (229), Expect = 3.903e-21
Identity = 47/109 (43.12%), Postives = 68/109 (62.39%), Query Frame = 0 
Query:    1 MKFIAVLGLLIAGASALSVEIPWDTCVEDSAATLVTDFTPYPVRIVSGEQLSTKLVLNVLKEIDGDLEVELKMAKKGALFNIPIPCIEISEGFFLGSCKYKVAELLEKY 109
            MK IA+  LL    S   +E  W++C  D+        +PYP+ +VSG  L  K + ++ K++DGD++VELK+ KKG + +IPIPCIE   G  LGSC YK+ E++ KY
Sbjct:    1 MKIIAIFALLFIAVSGEDLE--WESCNPDNLGEGDIALSPYPLPVVSGTSLDLKALFDLHKDLDGDVDVELKLVKKG-IVSIPIPCIESPSGLHLGSCSYKLEEIVSKY 106
The following BLAST results are available for this feature:
BLAST of EMLSAG00000007327 vs. GO
Analysis Date: 2014-04-02 (Blast vs. GO)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000007327 vs. C. finmarchicus
Analysis Date: 2014-05-09 (TblastN vs C. finmarchicus TSA)
Total hits: 13
Match NameE-valueIdentityDescription
gi|592823662|gb|GAXK01130906.1|3.558e-333.33TSA: Calanus finmarchicus comp179071_c0_seq4 trans... [more]
gi|592823664|gb|GAXK01130904.1|6.169e-333.33TSA: Calanus finmarchicus comp179071_c0_seq2 trans... [more]
gi|592820211|gb|GAXK01134357.1|1.935e+040.00TSA: Calanus finmarchicus comp92639_c0_seq1 transc... [more]

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BLAST of EMLSAG00000007327 vs. L. salmonis peptides
Analysis Date: 2014-05-10 (Blastp vs. self)
Total hits: 4
Match NameE-valueIdentityDescription
EMLSAP000000073273.632e-74100.00pep:novel supercontig:LSalAtl2s:LSalAtl2s412:16382... [more]
EMLSAP000000085134.272e-2443.12pep:novel supercontig:LSalAtl2s:LSalAtl2s524:35981... [more]
EMLSAP000000052166.124e-2141.18pep:novel supercontig:LSalAtl2s:LSalAtl2s27639:2:3... [more]
EMLSAP000000020462.012e-2038.74pep:novel supercontig:LSalAtl2s:LSalAtl2s1371:3159... [more]
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BLAST of EMLSAG00000007327 vs. SwissProt
Analysis Date: 2017-02-10 (Blastp vs. SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000007327 vs. Select Arthropod Genomes
Analysis Date: 2017-02-20 (Blastp vs. Selected Arthropods)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000007327 vs. nr
Analysis Date: 2017-02-20 (Blastp vs. NR (2/2017))
Total hits: 1
Match NameE-valueIdentityDescription
gi|155966306|gb|ABU41106.1|3.903e-2143.12hypothetical protein [Lepeophtheirus salmonis][more]
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BLAST of EMLSAG00000007327 vs. Tigriopus kingsejongenis genes
Analysis Date: 2018-04-18 (Blastp vs. Tigriopus kingsejongensis proteins)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
LSalAtl2s412supercontigLSalAtl2s412:163825..164621 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
ensembl2013-09-26 .965016
Blast vs. GO2014-04-02
TblastN vs C. finmarchicus TSA2014-05-09
Blastp vs. self2014-05-10
Blastp vs. SwissProt2017-02-10
Blastp vs. Selected Arthropods2017-02-20
Blastp vs. NR (2/2017)2017-02-20
Blastp vs. Tigriopus kingsejongensis proteins2018-04-18
Properties
Property NameValue
Logic nameensemblgenomes
Descriptionmaker-LSalAtl2s412-augustus-gene-1.19
Biotypeprotein_coding
EvidenceIEA
Notehypothetical protein [Lepeophtheirus salmonis]
Cross References
External references for this gene
DatabaseAccession
Ensembl Metazoa (gene)EMLSAG00000007327 (primary cross-reference)
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
EMLSAT00000007327EMLSAT00000007327-703174Lepeophtheirus salmonismRNA


Sequences
The following sequences are available for this feature:

gene from alignment at LSalAtl2s412:163825..164621+

Legend: mRNA
Hold the cursor over a type above to highlight its positions in the sequence below.
>EMLSAG00000007327-690093 ID=EMLSAG00000007327-690093|Name=EMLSAG00000007327|organism=Lepeophtheirus salmonis|type=gene|length=797bp|location=Sequence derived from alignment at LSalAtl2s412:163825..164621+ (Lepeophtheirus salmonis)
TATTGTTGCAAATCCTTGTAGTTTCATATCTTCAACTTCCAAAGAAACAT
ACATACCCACATCATGAAATTCATTGCAGTTCTTGGTCTTTTGATCGCTG
GAGCATCTGCTCTCTCAGTTGAGATCCCGTGGGATACCTGTGTTGAAGAC
AGTGCCGCTACCCTTGTCACTGACTTCACTCCCTATCCCGTGAGAATCGT
TTCTGGAGAACAATTGAGTACAAAACTTGTATTGAATGTCCTCAAGGAAA
TTGATGGAGACCTTGAAGTTGAATTGAAAATGGCCAAGAAAGGAGCTCTT
TTCAATATTCCCATTCCTTGCATTGAGGTAATTTCTTCCATTTTAAATTA
GATTTTTAATTTCACAATGGATTTATAATTCATAGATTTCTGAGGGATTT
TTTCTCGGATCCTGCAAGTACAAGGTTGCTGAACTATTGGAAAAATACGG
ANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTAACTCTTGTGCCCTGAC
TTTGTTCCCGAAGGACAAGAGTGCTCTCTCCCTATCAAGCCCGGTACATT
TGGAGGTGAAGGAAGTCTAACCCTTCCTAATATCCCCAATGCCATCGCCA
ATTTGGCTAAGGGAAAGATCATTGTTTCCGCCAATATCGTAAAGGATGGA
AGTGAAAGTGTTGCATGCATCTCTGGAGTTATTGAACTTACCAACAAATA
AATTTCCAATTTAATCTTTTTTTTTAAATAGAAAAATAAAAGAAAAT
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