EMLSAG00000007327, EMLSAG00000007327-690093 (gene) Lepeophtheirus salmonis

Overview
NameEMLSAG00000007327
Unique NameEMLSAG00000007327-690093
Typegene
OrganismLepeophtheirus salmonis (salmon louse)
Associated RNAi Experiments
Table of all RNA interference experiments conducted using this feature, grouped by Phenotype CV: no visible phenotype
Gallery Image Title Gene or target symbol Sex/Stage Phenotype Datesort descending
U F165 UN49_7327 female
  1. PreAdult2
  2. Adult
-Missing-
no visible phenotype
03.12.2014 - 13:49
14.01.2015 - 00:00
Homology
BLAST of EMLSAG00000007327 vs. C. finmarchicus
Match: gi|592892529|gb|GAXK01065846.1| (TSA: Calanus finmarchicus comp4881_c0_seq1 transcribed RNA sequence)

HSP 1 Score: 51.6026 bits (122), Expect = 7.606e-8
Identity = 26/69 (37.68%), Postives = 43/69 (62.32%), Query Frame = 0
Query:   40 PYPVRIVSGEQLSTKLVLNVLKEIDGDLEVELKMAKKGALFNIPIPCIEISEGFFLGSCKYKVAELLEK 108
            P+P+ + +GE ++  + L + + +    +V LK+ K+G L +IP+PC+EI EG  LGSC Y    LL +
Sbjct:  191 PFPIVVATGESITLSVQLTLNEPVPVGAQVSLKIKKEG-LIDIPLPCLEI-EGLHLGSCDYDADTLLAE 391          
BLAST of EMLSAG00000007327 vs. C. finmarchicus
Match: gi|592850395|gb|GAXK01107149.1| (TSA: Calanus finmarchicus comp36345_c0_seq1 transcribed RNA sequence)

HSP 1 Score: 49.6766 bits (117), Expect = 2.336e-7
Identity = 24/68 (35.29%), Postives = 43/68 (63.24%), Query Frame = 0
Query:   39 TPYPVRIVSGEQLSTKLVLNVLKEIDGDLEVELKMAKKGALFNIPIPCIEISEGFFLGSCKYKVAELL 106
            TP+P+ + +G  ++    + +L+E+     V++K+ K+G L NIP PC+E+ EG  +GSC Y   ++L
Sbjct:  170 TPFPIEMATGNVITLAAQITLLEELPVGTTVDIKIVKEG-LINIPFPCVEV-EGQMVGSCSYNGDDIL 367          
BLAST of EMLSAG00000007327 vs. C. finmarchicus
Match: gi|592837693|gb|GAXK01119851.1| (TSA: Calanus finmarchicus comp652609_c0_seq2 transcribed RNA sequence)

HSP 1 Score: 49.2914 bits (116), Expect = 7.917e-7
Identity = 25/73 (34.25%), Postives = 44/73 (60.27%), Query Frame = 0
Query:   37 DFTPYPVRIVSGEQLSTKLVLNVLKEIDGDLEVELKMAKKGALFNIPIPCIEISEGFFLGSCKYKVAELLEKY 109
            DF PYP++I +    + + ++++LK I   + +E+++ K G + +IP PC E  EG+  GSC Y   E L+ +
Sbjct:  477 DFEPYPIQIKTEGVEAVRTMIHLLKSIPEKISIEVEITKLG-IIDIPTPCFEW-EGYHFGSCTYDGDEFLKMF 689          

HSP 2 Score: 29.6462 bits (65), Expect = 3.275e+0
Identity = 12/34 (35.29%), Postives = 19/34 (55.88%), Query Frame = 0
Query:   76 KGALFNIPIPCIEISEGFFLGSCKYKVAELLEKY 109
            +  L ++ IPC+E  +   +GSC Y   E L K+
Sbjct: 1050 REGLIDMTIPCLEWEDWGLVGSCTYDAEEFLSKF 1151          
BLAST of EMLSAG00000007327 vs. C. finmarchicus
Match: gi|592837694|gb|GAXK01119850.1| (TSA: Calanus finmarchicus comp652609_c0_seq1 transcribed RNA sequence)

HSP 1 Score: 49.2914 bits (116), Expect = 8.576e-7
Identity = 25/73 (34.25%), Postives = 44/73 (60.27%), Query Frame = 0
Query:   37 DFTPYPVRIVSGEQLSTKLVLNVLKEIDGDLEVELKMAKKGALFNIPIPCIEISEGFFLGSCKYKVAELLEKY 109
            DF PYP++I +    + + ++++LK I   + +E+++ K G + +IP PC E  EG+  GSC Y   E L+ +
Sbjct:  477 DFEPYPIQIKTEGVEAVRTMIHLLKSIPEKISIEVEITKLG-IIDIPTPCFEW-EGYHFGSCTYDGDEFLKMF 689          

HSP 2 Score: 36.1946 bits (82), Expect = 1.914e-2
Identity = 20/73 (27.40%), Postives = 36/73 (49.32%), Query Frame = 0
Query:   37 DFTPYPVRIVSGEQLSTKLVLNVLKEIDGDLEVELKMAKKGALFNIPIPCIEISEGFFLGSCKYKVAELLEKY 109
            D  P+P+ +   +    ++V ++L  I     +   + K+G +  I IPC+E  +   +GSC Y   E L K+
Sbjct: 1050 DIYPFPMSMCLCKTNYIRIVADLLVTIPLGATISFTIVKEG-IIPITIPCLEWEDWGLVGSCTYDAEEFLSKF 1265          
BLAST of EMLSAG00000007327 vs. C. finmarchicus
Match: gi|592805766|gb|GAXK01148802.1| (TSA: Calanus finmarchicus comp742106_c0_seq1 transcribed RNA sequence)

HSP 1 Score: 47.7506 bits (112), Expect = 1.441e-6
Identity = 22/69 (31.88%), Postives = 41/69 (59.42%), Query Frame = 0
Query:   40 PYPVRIVSGEQLSTKLVLNVLKEIDGDLEVELKMAKKGALFNIPIPCIEISEGFFLGSCKYKVAELLEK 108
            P+P+ +++G  ++    + + +E+     V  K+ K+  + NIPIPC++I +G  +GSC Y V E+L  
Sbjct:  198 PFPIELLTGHNITFAAQITLTEELPMGTTVHFKLVKQD-IINIPIPCLDI-DGINIGSCSYDVDEILTS 398          
BLAST of EMLSAG00000007327 vs. C. finmarchicus
Match: gi|592805765|gb|GAXK01148803.1| (TSA: Calanus finmarchicus comp742106_c0_seq2 transcribed RNA sequence)

HSP 1 Score: 45.8246 bits (107), Expect = 2.298e-6
Identity = 21/65 (32.31%), Postives = 39/65 (60.00%), Query Frame = 0
Query:   40 PYPVRIVSGEQLSTKLVLNVLKEIDGDLEVELKMAKKGALFNIPIPCIEISEGFFLGSCKYKVAE 104
            P+P+ +++G  ++    + + +E+     V  K+ K+  + NIPIPC++I +G  +GSC Y V E
Sbjct:  198 PFPIELLTGHNITFAAQITLTEELPMGTTVHFKLVKQD-IINIPIPCLDI-DGINIGSCSYDVDE 386          
BLAST of EMLSAG00000007327 vs. C. finmarchicus
Match: gi|592766305|gb|GAXK01188263.1| (TSA: Calanus finmarchicus comp10513_c1_seq1 transcribed RNA sequence)

HSP 1 Score: 47.7506 bits (112), Expect = 2.619e-6
Identity = 28/86 (32.56%), Postives = 47/86 (54.65%), Query Frame = 0
Query:   26 CVEDSAATL---VTDFTPYPVRIVSGEQLSTKLVLNVLKEIDGDLEVELKMAKKGALFNIPIPCIEISEGFFLGSCKYKVAELLEK 108
            C E++A  L   V    P+P+ +V+G  L   ++  + +       V++ M  +G L NIPIPC+E+ +   LGSC+Y + +LL  
Sbjct:  863 CDENTAKPLSIEVATIEPFPIPLVTGTVLDVNVLFQLNEMCPAGTTVKMAMELQG-LINIPIPCLEVDD-IALGSCEYAIDDLLSA 1114          
BLAST of EMLSAG00000007327 vs. C. finmarchicus
Match: gi|592913583|gb|GAXK01044792.1| (TSA: Calanus finmarchicus comp308971_c0_seq1 transcribed RNA sequence)

HSP 1 Score: 41.2022 bits (95), Expect = 4.428e-4
Identity = 17/70 (24.29%), Postives = 36/70 (51.43%), Query Frame = 0
Query:   40 PYPVRIVSGEQLSTKLVLNVLKEIDGDLEVELKMAKKGALFNIPIPCIEISEGFFLGSCKYKVAELLEKY 109
            PYPV     E +S    +N+ + I    + ++++ K+    ++ +PCI+ +E   +GSC Y+    +  +
Sbjct: 1946 PYPVLFEPNETVSISAWMNLFENITAGSQFKVRITKEDGPISVLMPCIDSNEWGLIGSCDYEGNSFIRHF 2155          
BLAST of EMLSAG00000007327 vs. C. finmarchicus
Match: gi|592823663|gb|GAXK01130905.1| (TSA: Calanus finmarchicus comp179071_c0_seq3 transcribed RNA sequence)

HSP 1 Score: 38.1206 bits (87), Expect = 1.841e-3
Identity = 18/54 (33.33%), Postives = 30/54 (55.56%), Query Frame = 0
Query:   38 FTPYPVRIVS---GEQLSTKLVLNVLKEIDGDLEVELKMAKKGALFNIPIPCIE 88
            F+PYP+ + S   G+       ++V KEI  +  +E+ + + G   NIP+PCI 
Sbjct:   90 FSPYPIVLSSLLPGKTYDVTFAIDVTKEIPAEATIEVMVERVGFYGNIPLPCIH 251          
BLAST of EMLSAG00000007327 vs. C. finmarchicus
Match: gi|592823665|gb|GAXK01130903.1| (TSA: Calanus finmarchicus comp179071_c0_seq1 transcribed RNA sequence)

HSP 1 Score: 37.7354 bits (86), Expect = 3.146e-3
Identity = 18/54 (33.33%), Postives = 30/54 (55.56%), Query Frame = 0
Query:   38 FTPYPVRIVS---GEQLSTKLVLNVLKEIDGDLEVELKMAKKGALFNIPIPCIE 88
            F+PYP+ + S   G+       ++V KEI  +  +E+ + + G   NIP+PCI 
Sbjct:   90 FSPYPIVLSSLLPGKTYDVTFAIDVTKEIPAEATIEVMVERVGFYGNIPLPCIH 251          
BLAST of EMLSAG00000007327 vs. L. salmonis peptides
Match: EMLSAP00000007327 (pep:novel supercontig:LSalAtl2s:LSalAtl2s412:163825:164621:1 gene:EMLSAG00000007327 transcript:EMLSAT00000007327 description:"maker-LSalAtl2s412-augustus-gene-1.19")

HSP 1 Score: 220.32 bits (560), Expect = 3.632e-74
Identity = 110/110 (100.00%), Postives = 110/110 (100.00%), Query Frame = 0
Query:    1 MKFIAVLGLLIAGASALSVEIPWDTCVEDSAATLVTDFTPYPVRIVSGEQLSTKLVLNVLKEIDGDLEVELKMAKKGALFNIPIPCIEISEGFFLGSCKYKVAELLEKYG 110
            MKFIAVLGLLIAGASALSVEIPWDTCVEDSAATLVTDFTPYPVRIVSGEQLSTKLVLNVLKEIDGDLEVELKMAKKGALFNIPIPCIEISEGFFLGSCKYKVAELLEKYG
Sbjct:    1 MKFIAVLGLLIAGASALSVEIPWDTCVEDSAATLVTDFTPYPVRIVSGEQLSTKLVLNVLKEIDGDLEVELKMAKKGALFNIPIPCIEISEGFFLGSCKYKVAELLEKYG 110          
BLAST of EMLSAG00000007327 vs. L. salmonis peptides
Match: EMLSAP00000008513 (pep:novel supercontig:LSalAtl2s:LSalAtl2s524:35981:36548:-1 gene:EMLSAG00000008513 transcript:EMLSAT00000008513 description:"maker-LSalAtl2s524-augustus-gene-0.17")

HSP 1 Score: 92.4337 bits (228), Expect = 4.272e-24
Identity = 47/109 (43.12%), Postives = 68/109 (62.39%), Query Frame = 0
Query:    1 MKFIAVLGLLIAGASALSVEIPWDTCVEDSAATLVTDFTPYPVRIVSGEQLSTKLVLNVLKEIDGDLEVELKMAKKGALFNIPIPCIEISEGFFLGSCKYKVAELLEKY 109
            MK IAVL LL    S   +E  W++C  D+        +PYP+ +VSG  L  K + ++ K++DGD++VE+K+ KKG + +IPIPCIE   G  LG C YK+ E++ KY
Sbjct:    1 MKIIAVLALLFIAVSGEDLE--WESCNPDNWGEGNIXLSPYPLPVVSGTSLDVKALFDLHKDLDGDVDVEIKLVKKG-IVSIPIPCIESPSGLHLGXCSYKLEEIVTKY 106          
BLAST of EMLSAG00000007327 vs. L. salmonis peptides
Match: EMLSAP00000005216 (pep:novel supercontig:LSalAtl2s:LSalAtl2s27639:2:371:-1 gene:EMLSAG00000005216 transcript:EMLSAT00000005216 description:"maker-LSalAtl2s27639-augustus-gene-0.2")

HSP 1 Score: 82.4185 bits (202), Expect = 6.124e-21
Identity = 42/102 (41.18%), Postives = 63/102 (61.76%), Query Frame = 0
Query:    5 AVLGLLIAGASALSVEIPWDTCVEDSAATLVTDFTPYPVRIVSGEQLSTKLVLNVLKEIDGDLEVELKMAKKGALFNIPIPCIEISEGFFLGSCKYKVAELL 106
            A+  LL    S   +E  W++C  D+        +PYP+ +VSG  L  K + ++ K++DGD++VELK+ KKG + +IPIPCIE   G  LGSC YK+ E++
Sbjct:    1 AIFALLFIAVSGEDLE--WESCNPDNLGEGDIALSPYPLPVVSGTSLDLKALFDLHKDLDGDVDVELKLVKKG-IVSIPIPCIESPSGLHLGSCSYKLEEIV 99          
BLAST of EMLSAG00000007327 vs. L. salmonis peptides
Match: EMLSAP00000002046 (pep:novel supercontig:LSalAtl2s:LSalAtl2s1371:31599:32602:1 gene:EMLSAG00000002046 transcript:EMLSAT00000002046 description:"maker-LSalAtl2s1371-augustus-gene-0.2")

HSP 1 Score: 83.1889 bits (204), Expect = 2.012e-20
Identity = 43/111 (38.74%), Postives = 73/111 (65.77%), Query Frame = 0
Query:    1 MKFIAVLGLLIAGASALSV--EIPWDTCVEDSAATLVTDFTPYPVRIVSGEQLSTKLVLNVLKEIDGDLEVELKMAKKGALFNIPIPCIEISEGFFLGSCKYKVAELLEKY 109
            + F A+L ++++ AS+L +  ++ ++ C  D+      D  PYP+ +V G Q+  K +  + K++DGD++V++KM K G + +IPIPC+EI  G FLGSC YK+ E++ KY
Sbjct:    5 LSFCALL-IVVSSASSLKLKDDLGFEPCNLDNWGEGNIDVNPYPLPVVEGTQVDIKALFQLDKKLDGDVDVKIKMVKTG-IISIPIPCLEIRPGVFLGSCDYKLEEIITKY 113          
BLAST of EMLSAG00000007327 vs. nr
Match: gi|155966306|gb|ABU41106.1| (hypothetical protein [Lepeophtheirus salmonis])

HSP 1 Score: 92.8189 bits (229), Expect = 3.903e-21
Identity = 47/109 (43.12%), Postives = 68/109 (62.39%), Query Frame = 0
Query:    1 MKFIAVLGLLIAGASALSVEIPWDTCVEDSAATLVTDFTPYPVRIVSGEQLSTKLVLNVLKEIDGDLEVELKMAKKGALFNIPIPCIEISEGFFLGSCKYKVAELLEKY 109
            MK IA+  LL    S   +E  W++C  D+        +PYP+ +VSG  L  K + ++ K++DGD++VELK+ KKG + +IPIPCIE   G  LGSC YK+ E++ KY
Sbjct:    1 MKIIAIFALLFIAVSGEDLE--WESCNPDNLGEGDIALSPYPLPVVSGTSLDLKALFDLHKDLDGDVDVELKLVKKG-IVSIPIPCIESPSGLHLGSCSYKLEEIVSKY 106          
The following BLAST results are available for this feature:
BLAST of EMLSAG00000007327 vs. GO
Analysis Date: 2014-04-02 (Blast vs. GO)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000007327 vs. C. finmarchicus
Analysis Date: 2014-05-09 (TblastN vs C. finmarchicus TSA)
Total hits: 13
Match NameE-valueIdentityDescription
gi|592892529|gb|GAXK01065846.1|7.606e-837.68TSA: Calanus finmarchicus comp4881_c0_seq1 transcr... [more]
gi|592850395|gb|GAXK01107149.1|2.336e-735.29TSA: Calanus finmarchicus comp36345_c0_seq1 transc... [more]
gi|592837693|gb|GAXK01119851.1|7.917e-734.25TSA: Calanus finmarchicus comp652609_c0_seq2 trans... [more]
gi|592837694|gb|GAXK01119850.1|8.576e-734.25TSA: Calanus finmarchicus comp652609_c0_seq1 trans... [more]
gi|592805766|gb|GAXK01148802.1|1.441e-631.88TSA: Calanus finmarchicus comp742106_c0_seq1 trans... [more]
gi|592805765|gb|GAXK01148803.1|2.298e-632.31TSA: Calanus finmarchicus comp742106_c0_seq2 trans... [more]
gi|592766305|gb|GAXK01188263.1|2.619e-632.56TSA: Calanus finmarchicus comp10513_c1_seq1 transc... [more]
gi|592913583|gb|GAXK01044792.1|4.428e-424.29TSA: Calanus finmarchicus comp308971_c0_seq1 trans... [more]
gi|592823663|gb|GAXK01130905.1|1.841e-333.33TSA: Calanus finmarchicus comp179071_c0_seq3 trans... [more]
gi|592823665|gb|GAXK01130903.1|3.146e-333.33TSA: Calanus finmarchicus comp179071_c0_seq1 trans... [more]

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BLAST of EMLSAG00000007327 vs. L. salmonis peptides
Analysis Date: 2014-05-10 (Blastp vs. self)
Total hits: 4
Match NameE-valueIdentityDescription
EMLSAP000000073273.632e-74100.00pep:novel supercontig:LSalAtl2s:LSalAtl2s412:16382... [more]
EMLSAP000000085134.272e-2443.12pep:novel supercontig:LSalAtl2s:LSalAtl2s524:35981... [more]
EMLSAP000000052166.124e-2141.18pep:novel supercontig:LSalAtl2s:LSalAtl2s27639:2:3... [more]
EMLSAP000000020462.012e-2038.74pep:novel supercontig:LSalAtl2s:LSalAtl2s1371:3159... [more]
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BLAST of EMLSAG00000007327 vs. SwissProt
Analysis Date: 2017-02-10 (Blastp vs. SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000007327 vs. Select Arthropod Genomes
Analysis Date: 2017-02-20 (Blastp vs. Selected Arthropods)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000007327 vs. nr
Analysis Date: 2017-02-20 (Blastp vs. NR (2/2017))
Total hits: 1
Match NameE-valueIdentityDescription
gi|155966306|gb|ABU41106.1|3.903e-2143.12hypothetical protein [Lepeophtheirus salmonis][more]
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BLAST of EMLSAG00000007327 vs. Tigriopus kingsejongenis genes
Analysis Date: 2018-04-18 (Blastp vs. Tigriopus kingsejongensis proteins)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
LSalAtl2s412supercontigLSalAtl2s412:163825..164621 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
ensembl2013-09-26 .965016
Blast vs. GO2014-04-02
TblastN vs C. finmarchicus TSA2014-05-09
Blastp vs. self2014-05-10
Blastp vs. SwissProt2017-02-10
Blastp vs. Selected Arthropods2017-02-20
Blastp vs. NR (2/2017)2017-02-20
Blastp vs. Tigriopus kingsejongensis proteins2018-04-18
Properties
Property NameValue
Logic nameensemblgenomes
Descriptionmaker-LSalAtl2s412-augustus-gene-1.19
Biotypeprotein_coding
EvidenceIEA
Notehypothetical protein [Lepeophtheirus salmonis]
Cross References
External references for this gene
DatabaseAccession
Ensembl Metazoa (gene)EMLSAG00000007327 (primary cross-reference)
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
EMLSAT00000007327EMLSAT00000007327-703174Lepeophtheirus salmonismRNA


Sequences
The following sequences are available for this feature:

gene from alignment at LSalAtl2s412:163825..164621+

Legend: mRNA
Hold the cursor over a type above to highlight its positions in the sequence below.
>EMLSAG00000007327-690093 ID=EMLSAG00000007327-690093|Name=EMLSAG00000007327|organism=Lepeophtheirus salmonis|type=gene|length=797bp|location=Sequence derived from alignment at LSalAtl2s412:163825..164621+ (Lepeophtheirus salmonis)
TATTGTTGCAAATCCTTGTAGTTTCATATCTTCAACTTCCAAAGAAACAT ACATACCCACATCATGAAATTCATTGCAGTTCTTGGTCTTTTGATCGCTG GAGCATCTGCTCTCTCAGTTGAGATCCCGTGGGATACCTGTGTTGAAGAC AGTGCCGCTACCCTTGTCACTGACTTCACTCCCTATCCCGTGAGAATCGT TTCTGGAGAACAATTGAGTACAAAACTTGTATTGAATGTCCTCAAGGAAA TTGATGGAGACCTTGAAGTTGAATTGAAAATGGCCAAGAAAGGAGCTCTT TTCAATATTCCCATTCCTTGCATTGAGGTAATTTCTTCCATTTTAAATTA GATTTTTAATTTCACAATGGATTTATAATTCATAGATTTCTGAGGGATTT TTTCTCGGATCCTGCAAGTACAAGGTTGCTGAACTATTGGAAAAATACGG ANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTAACTCTTGTGCCCTGAC TTTGTTCCCGAAGGACAAGAGTGCTCTCTCCCTATCAAGCCCGGTACATT TGGAGGTGAAGGAAGTCTAACCCTTCCTAATATCCCCAATGCCATCGCCA ATTTGGCTAAGGGAAAGATCATTGTTTCCGCCAATATCGTAAAGGATGGA AGTGAAAGTGTTGCATGCATCTCTGGAGTTATTGAACTTACCAACAAATA AATTTCCAATTTAATCTTTTTTTTTAAATAGAAAAATAAAAGAAAAT
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