EMLSAG00000007918, EMLSAG00000007918-690684 (gene) Lepeophtheirus salmonis

Overview
NameEMLSAG00000007918
Unique NameEMLSAG00000007918-690684
Typegene
OrganismLepeophtheirus salmonis (salmon louse)
Associated RNAi Experiments
Table of all RNA interference experiments conducted using this feature, grouped by Phenotype CV: no visible phenotype
Gallery Image Title Gene or target symbol Sex/Stage Phenotype Datesort descending
K F82 female
  1. PreAdult2
  2. Adult
 -Missing-
no visible phenotype 		03.04.2013 - 14:45
13.05.2013 - 00:00
Homology
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BLAST of EMLSAG00000007918 vs. C. finmarchicus
Match: gi|592958363|gb|GAXK01000193.1| (TSA: Calanus finmarchicus comp3227278_c0_seq1 transcribed RNA sequence)

HSP 1 Score: 31.187 bits (69), Expect = 5.689e+0
Identity = 26/85 (30.59%), Postives = 36/85 (42.35%), Query Frame = 0 
Query:   33 PDLYACYSCPYFCKTAQELLRHVHGEEHASAMKQWNSRGKNYNNVQPNIFTNLFCDYCDEEFLHEASLRLHRFGRKHLGGGRLNT 117
            P  Y+C  C        +L +H H  EH S   + N+ G       PN+     CD C   F +EA L+ H    KH G  +L +
Sbjct:   98 PKQYSCEICDSIFVRQGDLEKH-HETEHDS---KQNAHG-------PNVLIKNLCDVCLISFQNEAELQQHT--AKHSGNIKLQS 313
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BLAST of EMLSAG00000007918 vs. C. finmarchicus
Match: gi|592846912|gb|GAXK01110632.1| (TSA: Calanus finmarchicus comp3395633_c0_seq1 transcribed RNA sequence)

HSP 1 Score: 31.5722 bits (70), Expect = 6.155e+0
Identity = 18/58 (31.03%), Postives = 23/58 (39.66%), Query Frame = 0 
Query:   54 HVHGEEHASAMKQWNSRGKNYNNVQPNIFTNLFCDYCDEEFLHEASLRLHRFGRKHLG 111
             V G +      +WN    N  N +P    N FCDYC      E      +  RKH+G
Sbjct:  231 EVKGRDEVFVQLEWNEYPSN-ENKKPFFLYNFFCDYC------EIGFEEWKDFRKHVG 383
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BLAST of EMLSAG00000007918 vs. C. finmarchicus
Match: gi|592892806|gb|GAXK01065569.1| (TSA: Calanus finmarchicus comp5668_c51_seq4 transcribed RNA sequence)

HSP 1 Score: 31.5722 bits (70), Expect = 6.834e+0
Identity = 22/85 (25.88%), Postives = 36/85 (42.35%), Query Frame = 0 
Query:   30 DSMPDLYACYSCPYFCKTAQELLRHVHGEEHA----------SAMKQWNSRGKNYNNVQPNIFTNLFCDYCDEEFLHEASLRLHR 104
            DS   L+ C  C    +    L+RHV  +              A  QW+ +  N N++   I    FCD C+ +  ++ +LR H+
Sbjct:  374 DSKNHLHKCEECGAGFRWKNVLVRHVRSQHEGVRYSCSNCDYQAATQWDLKRHN-NSIHEGI--KYFCDKCEFQATYQNNLRTHK 619
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BLAST of EMLSAG00000007918 vs. C. finmarchicus
Match: gi|592789392|gb|GAXK01165176.1| (TSA: Calanus finmarchicus comp788504_c0_seq1 transcribed RNA sequence)

HSP 1 Score: 32.3426 bits (72), Expect = 7.055e+0
Identity = 23/86 (26.74%), Postives = 38/86 (44.19%), Query Frame = 0 
Query:   18 RRRRSHQICPTEDSMPDLYACYSCPYFCKTAQELLRHVHGEEHASAMKQWNSRGKNYNNVQPNIFTNLFCDYCDEEFLHEASLRLH 103
            + RR+H +   E+ + D + C  CP+ C     L  HV  + H+ A+                    L CD C+ +F ++ SLR+H
Sbjct:  735 KHRRNHHM-TEEEKLMDFFHCTLCPFRCAEETYLKVHV-SKAHSVAV--------------------LSCDLCESKFSNKDSLRVH 926
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BLAST of EMLSAG00000007918 vs. C. finmarchicus
Match: gi|592777266|gb|GAXK01177302.1| (TSA: Calanus finmarchicus comp141307_c0_seq1 transcribed RNA sequence)

HSP 1 Score: 32.3426 bits (72), Expect = 7.541e+0
Identity = 28/93 (30.11%), Postives = 42/93 (45.16%), Query Frame = 0 
Query:   35 LYACYSCPYFCKTAQELLRHVHGEEHASAMKQWNSRGKNYNNVQPNIFTNLFCDYCDEEFLHEASLRLHRFGRKHLGGGRLNTKKLHPCYLCD 127
            LY C  C Y  KT            HASA+K+  S  K ++     IF    C+ CD   +H+++L+ H   R H    ++    LH C +C+
Sbjct:  439 LYQCQRCDY--KTG-----------HASALKRHQS--KVHDKSMQMIFA---CEACDYHTIHKSALKRHTANR-HQKASQV----LHQCSVCE 648
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BLAST of EMLSAG00000007918 vs. C. finmarchicus
Match: gi|592800255|gb|GAXK01154313.1| (TSA: Calanus finmarchicus comp1258121_c0_seq1 transcribed RNA sequence)

HSP 1 Score: 31.9574 bits (71), Expect = 8.021e+0
Identity = 20/60 (33.33%), Postives = 29/60 (48.33%), Query Frame = 0 
Query:   36 YACYSCPYFCKTA-QELLRHVHGEEHASAMKQWNSRGKNYNNVQPNIFTNLFCDYCDEEF 94
            Y C+SC +       EL +H+  E+HA+        G ++ NV     TNL+C  CD  F
Sbjct:  723 YLCFSCNFHTFGGIPELKKHIEAEQHAT-------NGDHFTNVVEKR-TNLYCSKCDYFF 878
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BLAST of EMLSAG00000007918 vs. C. finmarchicus
Match: gi|592830100|gb|GAXK01127444.1| (TSA: Calanus finmarchicus comp1028613_c0_seq1 transcribed RNA sequence)

HSP 1 Score: 30.4166 bits (67), Expect = 8.173e+0
Identity = 18/66 (27.27%), Postives = 30/66 (45.45%), Query Frame = 0 
Query:  496 LKSQRSENGSKSVKSDTNVRSCRILPTKEAVDPHKKSALDKKLTPRTLQKYLNPRTSPALTNSGLP 561
             KS  SE  +K  K + N+ +  ++  +E    H+K   +    P++  KYL  + S    NS  P
Sbjct:   70 FKSAGSEKWAKKSKQEKNIMTSSVM-WQEVTRTHRKIEENSFFQPKSYDKYLGSKKSAGPMNSATP 264
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BLAST of EMLSAG00000007918 vs. C. finmarchicus
Match: gi|592949079|gb|GAXK01009474.1| (TSA: Calanus finmarchicus comp1249795_c0_seq2 transcribed RNA sequence)

HSP 1 Score: 31.5722 bits (70), Expect = 9.686e+0
Identity = 26/102 (25.49%), Postives = 43/102 (42.16%), Query Frame = 0 
Query:   36 YACYSCPYFCKTAQELLRHVHG----EEHASAM-----KQWNSRGKNYNNVQPNIFTNLFCDYCDEEFLHEASLRLHRFGRKHLGGGRLNTKKLHPCYLCDT 128
            + CY C  F  + +EL RH+ G    E H   M      + +S  ++ + +  N  T   CD CD+ +     +  HR    H+G  + +      C +C T
Sbjct:   78 FKCYQCSSFYSSTKELNRHIDGVHYEESHQCKMCPQTFTRKDSLTRHVSLIHSNDATEFACDLCDKLYRTWTDMMRHRRA-IHIGCTKFS------CSVCGT 362
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BLAST of EMLSAG00000007918 vs. L. salmonis peptides
Match: EMLSAP00000007918 (pep:novel supercontig:LSalAtl2s:LSalAtl2s467:99564:102245:1 gene:EMLSAG00000007918 transcript:EMLSAT00000007918 description:"augustus_masked-LSalAtl2s467-processed-gene-1.14")

HSP 1 Score: 1521.52 bits (3938), Expect = 0.000e+0
Identity = 746/746 (100.00%), Postives = 746/746 (100.00%), Query Frame = 0 
Query:    1 MRLILQALMQAVLESPLRRRRSHQICPTEDSMPDLYACYSCPYFCKTAQELLRHVHGEEHASAMKQWNSRGKNYNNVQPNIFTNLFCDYCDEEFLHEASLRLHRFGRKHLGGGRLNTKKLHPCYLCDTDKDININNHITEIEHCEKESMAXGFLIFCYQNGFEIPLKISPESLIGFLETLPVASLIPNVKLLRRLFGSDDNPNCPLNDKKLRIFISYTELSGSIYSPELPNKVIDLLTRCSFEEEKCSDTRFDRTTKLFYHSVSVHMVSPTDLLKELLQKIENEELRCEKKNNCCKECHNKSFISSLVYALHKDAHESRIECEHCMLQYKSVVEYCFKDDCGENNVVQSTKNLVDQMIKTVLLTSEIEHPLLIEKQSNKNFKDCHVKKRKRACSSDATDEEGLVGHWLLNCPNVRARKISVASRKKVDDDDSDNSENSVRSSKIVLNGSPQILPESEDEKDINGNLRKKPRLVHTSLPVEKPLRKRLSDKMLNPSLKSQRSENGSKSVKSDTNVRSCRILPTKEAVDPHKKSALDKKLTPRTLQKYLNPRTSPALTNSGLPLTRQNSKSKLNSSKILFKKDDKGLLSTQMNKIRSPNLNNSKSETNELRYSQVKPXLPIPLKSRKCDVATKIKPVDTMAKKYEIKKVSYTTDKFCRSQQIKNLNETITKTSNESADSDGPTISRSSTFVKNEIDDADPESQSNLKRVKGSHESLLFASSPKRLSTKLKSASVERIDLHTKEKLLRN 746
            MRLILQALMQAVLESPLRRRRSHQICPTEDSMPDLYACYSCPYFCKTAQELLRHVHGEEHASAMKQWNSRGKNYNNVQPNIFTNLFCDYCDEEFLHEASLRLHRFGRKHLGGGRLNTKKLHPCYLCDTDKDININNHITEIEHCEKESMAXGFLIFCYQNGFEIPLKISPESLIGFLETLPVASLIPNVKLLRRLFGSDDNPNCPLNDKKLRIFISYTELSGSIYSPELPNKVIDLLTRCSFEEEKCSDTRFDRTTKLFYHSVSVHMVSPTDLLKELLQKIENEELRCEKKNNCCKECHNKSFISSLVYALHKDAHESRIECEHCMLQYKSVVEYCFKDDCGENNVVQSTKNLVDQMIKTVLLTSEIEHPLLIEKQSNKNFKDCHVKKRKRACSSDATDEEGLVGHWLLNCPNVRARKISVASRKKVDDDDSDNSENSVRSSKIVLNGSPQILPESEDEKDINGNLRKKPRLVHTSLPVEKPLRKRLSDKMLNPSLKSQRSENGSKSVKSDTNVRSCRILPTKEAVDPHKKSALDKKLTPRTLQKYLNPRTSPALTNSGLPLTRQNSKSKLNSSKILFKKDDKGLLSTQMNKIRSPNLNNSKSETNELRYSQVKPXLPIPLKSRKCDVATKIKPVDTMAKKYEIKKVSYTTDKFCRSQQIKNLNETITKTSNESADSDGPTISRSSTFVKNEIDDADPESQSNLKRVKGSHESLLFASSPKRLSTKLKSASVERIDLHTKEKLLRN
Sbjct:    1 MRLILQALMQAVLESPLRRRRSHQICPTEDSMPDLYACYSCPYFCKTAQELLRHVHGEEHASAMKQWNSRGKNYNNVQPNIFTNLFCDYCDEEFLHEASLRLHRFGRKHLGGGRLNTKKLHPCYLCDTDKDININNHITEIEHCEKESMAXGFLIFCYQNGFEIPLKISPESLIGFLETLPVASLIPNVKLLRRLFGSDDNPNCPLNDKKLRIFISYTELSGSIYSPELPNKVIDLLTRCSFEEEKCSDTRFDRTTKLFYHSVSVHMVSPTDLLKELLQKIENEELRCEKKNNCCKECHNKSFISSLVYALHKDAHESRIECEHCMLQYKSVVEYCFKDDCGENNVVQSTKNLVDQMIKTVLLTSEIEHPLLIEKQSNKNFKDCHVKKRKRACSSDATDEEGLVGHWLLNCPNVRARKISVASRKKVDDDDSDNSENSVRSSKIVLNGSPQILPESEDEKDINGNLRKKPRLVHTSLPVEKPLRKRLSDKMLNPSLKSQRSENGSKSVKSDTNVRSCRILPTKEAVDPHKKSALDKKLTPRTLQKYLNPRTSPALTNSGLPLTRQNSKSKLNSSKILFKKDDKGLLSTQMNKIRSPNLNNSKSETNELRYSQVKPXLPIPLKSRKCDVATKIKPVDTMAKKYEIKKVSYTTDKFCRSQQIKNLNETITKTSNESADSDGPTISRSSTFVKNEIDDADPESQSNLKRVKGSHESLLFASSPKRLSTKLKSASVERIDLHTKEKLLRN 746
The following BLAST results are available for this feature:
BLAST of EMLSAG00000007918 vs. GO
Analysis Date: 2014-04-02 (Blast vs. GO)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000007918 vs. C. finmarchicus
Analysis Date: 2014-05-09 (TblastN vs C. finmarchicus TSA)
Total hits: 18
Match NameE-valueIdentityDescription
gi|592958363|gb|GAXK01000193.1|5.689e+030.59TSA: Calanus finmarchicus comp3227278_c0_seq1 tran... [more]
gi|592846912|gb|GAXK01110632.1|6.155e+031.03TSA: Calanus finmarchicus comp3395633_c0_seq1 tran... [more]
gi|592892806|gb|GAXK01065569.1|6.834e+025.88TSA: Calanus finmarchicus comp5668_c51_seq4 transc... [more]
gi|592789392|gb|GAXK01165176.1|7.055e+026.74TSA: Calanus finmarchicus comp788504_c0_seq1 trans... [more]
gi|592777266|gb|GAXK01177302.1|7.541e+030.11TSA: Calanus finmarchicus comp141307_c0_seq1 trans... [more]
gi|592800255|gb|GAXK01154313.1|8.021e+033.33TSA: Calanus finmarchicus comp1258121_c0_seq1 tran... [more]
gi|592830100|gb|GAXK01127444.1|8.173e+027.27TSA: Calanus finmarchicus comp1028613_c0_seq1 tran... [more]
gi|592949079|gb|GAXK01009474.1|9.686e+025.49TSA: Calanus finmarchicus comp1249795_c0_seq2 tran... [more]

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BLAST of EMLSAG00000007918 vs. L. salmonis peptides
Analysis Date: 2014-05-10 (Blastp vs. self)
Total hits: 1
Match NameE-valueIdentityDescription
EMLSAP000000079180.000e+0100.00pep:novel supercontig:LSalAtl2s:LSalAtl2s467:99564... [more]
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BLAST of EMLSAG00000007918 vs. SwissProt
Analysis Date: 2017-02-10 (Blastp vs. SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000007918 vs. Select Arthropod Genomes
Analysis Date: 2017-02-20 (Blastp vs. Selected Arthropods)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000007918 vs. nr
Analysis Date: 2017-02-20 (Blastp vs. NR (2/2017))
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000007918 vs. Tigriopus kingsejongenis genes
Analysis Date: 2018-04-18 (Blastp vs. Tigriopus kingsejongensis proteins)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
LSalAtl2s467supercontigLSalAtl2s467:99564..102245 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
ensembl2013-09-26 .965016
Blast vs. GO2014-04-02
TblastN vs C. finmarchicus TSA2014-05-09
Blastp vs. self2014-05-10
Blastp vs. SwissProt2017-02-10
Blastp vs. Selected Arthropods2017-02-20
Blastp vs. NR (2/2017)2017-02-20
Blastp vs. Tigriopus kingsejongensis proteins2018-04-18
Properties
Property NameValue
Logic nameensemblgenomes
Descriptionaugustus_masked-LSalAtl2s467-processed-gene-1.14
Biotypeprotein_coding
EvidenceIEA
NoteHypothetical protein
Cross References
External references for this gene
DatabaseAccession
Ensembl Metazoa (gene)EMLSAG00000007918 (primary cross-reference)
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
EMLSAT00000007918EMLSAT00000007918-703765Lepeophtheirus salmonismRNA


Sequences
The following sequences are available for this feature:

gene from alignment at LSalAtl2s467:99564..102245+

Legend: mRNA
Hold the cursor over a type above to highlight its positions in the sequence below.
>EMLSAG00000007918-690684 ID=EMLSAG00000007918-690684|Name=EMLSAG00000007918|organism=Lepeophtheirus salmonis|type=gene|length=2682bp|location=Sequence derived from alignment at LSalAtl2s467:99564..102245+ (Lepeophtheirus salmonis)
TAGCTTCACGTCATGAGGCTGATCTTACAAGCTTTGATGCAGTCAGGCAA
ATGATTGAAATAATATTTATTTATTTACTTATTTGAGCTCATATATATTA
AACAGTTGACCCGGATCTTAATTTTAGTTTAGTTATTTTTTTAATGTCAC
TGCAGATACATACTTTGTATTAAATTGCATATATTAATATTATATCAATC
ATTCATTAAATGGTTTAGAGCTGTATTAGAATCCCCCCTGAGGCGTAGAC
GAAGTCATCAAATTTGTCCAACAGAAGATTCCATGCCTGACTTGTATGCA
TGTTATTCATGCCCCTACTTTTGTAAGACAGCTCAAGAATTGCTTCGTCA
TGTTCATGGGGAAGAGCATGCTTCTGCAATGAAGCAATGGAATTCACGTG
GAAAAAATTATAACAATGTTCAACCAAATATATTCACCAACTTATTTTGT
GATTATTGTGACGAAGAATTCTTACACGAGGCCTCTCTTAGGCTTCATAG
ATTTGGACGAAAACATCTGGGTGGTGGTCGGTTAAATACTAAAAAGTTGC
ATCCATGTTACTTATGTGATACTGACAAAGATATTAATATCAATAATCAT
ATAACCGAAATTGAGCATTGTGAAAAGGAGTCTATGGCTGYTGGATTTTT
GATATTTTGTTATCAAAATGGATTTGAAATACCACTCAAAATATCTCCTG
AGGTAAGTCATATTTTTTTGGTATTGTAATGGTTCATATTAATCCCTTAT
CCTATTTTTATAGTCTCTCATAGGTTTTCTTGAGACTTTACCAGTTGCAA
GTCTTATTCCGAATGTAAAATTATTAAGAAGGCTGTTTGGGAGTGACGAT
AATCCAAACTGTCCCCTTAATGATAAAAAACTTAGAATATTCATCTCTTA
TACTGAGCTCTCTGGATCTATTTATAGCCCAGAATTACCAAATAAAGTCA
TTGACTTGCTTACACGCTGCTCTTTTGAGGAAGAAAAATGTTCGGATACA
CGTTTCGATAGAACAACAAAGCTTTTTTATCACTCTGTGTCGGTTCACAT
GGTAAGTCCTACAGATCTTTTAAAGGAGCTACTTCAAAAAATTGAGAATG
AAGAGTTACGATGTGAAAAGAAAAACAATTGTTGCAAGGAGTGTCACAAT
AAATCCTTCATTTCTTCATTGGTCTATGCTCTTCATAAGGATGCTCATGA
ATCTCGAATTGAATGCGAACATTGTATGTTACAATATAAATCTGTCGTTG
AATATTGTTTCAAAGATGATTGTGGTGAAAACAACGTCGTACAGTCTACT
AAAAATCTAGTTGATCAAATGATCAAAACCGTCCTTTTAACTTCTGAAAT
TGAGCATCCTTTGTTAATAGAAAAGCAATCTAATAAAAATTTCAAAGATT
GCCACGTCAAAAAACGTAAAAGAGCATGTTCATCAGATGCAACAGACGAA
GAAGGACTTGTGGGGCATTGGCTTTTAAATTGTCCAAATGTACGTGCACG
AAAAATATCCGTTGCATCTCGCAAAAAGGTTGATGATGATGATTCGGATA
ACTCGGAGAATTCTGTACGTTCATCGAAGATTGTTCTTAATGGATCTCCA
CAAATTCTTCCTGAGAGTGAAGATGAAAAAGATATAAATGGTAATCTTCG
AAAAAAACCAAGACTTGTACACACTTCTCTTCCAGTTGAAAAACCTTTAA
GAAAACGCCTATCTGATAAAATGTTAAATCCTTCACTAAAATCCCAAAGA
TCAGAAAATGGTAGCAAGTCTGTAAAAAGCGATACAAATGTTCGAAGCTG
TAGGATCCTTCCAACAAAAGAAGCCGTGGACCCGCATAAAAAATCTGCTT
TAGATAAAAAACTCACTCCCCGAACTCTGCAAAAGTATTTAAATCCAAGG
ACTTCACCTGCTTTGACAAACTCCGGACTTCCGTTGACTCGTCAAAATTC
TAAATCTAAATTGAATTCATCCAAAATTTTATTCAAGAAAGATGACAAGG
GTTTGTTATCTACTCAAATGAACAAAATACGATCTCCAAATTTAAATAAC
TCGAAATCTGAGACCAATGAGTTGCGTTATTCTCAAGTGAAACCCAGKCT
ACCAATTCCCCTTAAATCACGTAAGTGTGATGTTGCTACAAAAATTAAGC
CGGTAGACACTATGGCAAAAAAATATGAAATAAAAAAGGTATCCTACACA
ACGGACAAATTTTGCCGAAGTCAGCAAATAAAAAATTTGAATGAAACCAT
CACAAAAACATCGAATGAATCTGCTGATTCAGATGGTCCAACGATATCAC
GGTCATCCACGTTTGTTAAAAATGAAATTGATGATGCTGATCCTGAGAGT
CAATCCAATTTAAAACGTGTTAAAGGATCGCATGAATCTCTTTTATTTGC
ATCATCCCCCAAAAGGTTATCAACGAAATTAAAATCTGCGTCAGTTGAGC
GTATAGACTTACACACCAAGGAAAAGCTATTAAGAAACTGATAGCATAAT
AGTTTATATTAAATATATAATAGTCCTTTTAAATTTTTAAGATTATTCAT
GTACTTCTAGACATCGTCAAGAATAATGACCATAGTTTCTTGTCGTTACG
ATCTCATTAAATTGAATATAGCTTTTTTAATACATAATATCCACTACTTG
ATAGAAATACTTATATTGTGAAATTTTGTTGA
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