EMLSAG00000007918, EMLSAG00000007918-690684 (gene) Lepeophtheirus salmonis
Overview
Associated RNAi Experiments
Homology
BLAST of EMLSAG00000007918 vs. C. finmarchicus
Match: gi|592829980|gb|GAXK01127564.1| (TSA: Calanus finmarchicus comp170759_c0_seq1 transcribed RNA sequence) HSP 1 Score: 52.373 bits (124), Expect = 6.680e-6 Identity = 36/124 (29.03%), Postives = 61/124 (49.19%), Query Frame = 0 Query: 238 TRCSFEEEKCSDTRFDRTTKLFYHSVSVHMVSPTDLLKELLQKIXXXXXXXXXXXXXXXXXXXXSFISSLVYALHKDAHESR--IECEHCMLQYKSVVEYCFKDDCGENNVVQSTKNLVDQMIK 359 T C+F C+D +F+ T KL YH + +H V+P + + L+ K +S + YALH D H + I+C C +Y S ++Y D CG+N + ++ K+ V+ +I+ Sbjct: 2136 TVCTF----CND-KFEHTVKLLYHMLHLHKVNPVHFINKHLR-----------AKPVRCNHCLKPCMSPVTYALHADQHSLKKPIDCNTCKKKYVSHLKYYSDDICGDNAIPRNVKSFVNNVIR 2459
BLAST of EMLSAG00000007918 vs. C. finmarchicus
Match: gi|592782242|gb|GAXK01172326.1| (TSA: Calanus finmarchicus comp1410815_c0_seq1 transcribed RNA sequence) HSP 1 Score: 38.891 bits (89), Expect = 6.652e-2 Identity = 31/102 (30.39%), Postives = 43/102 (42.16%), Query Frame = 0 Query: 28 TEDSMPDLYACYSCPYFCKTAQELLRHVHGEEHASAMKQWNSRGKNYNNVQPNIFTNLFCDYCDEEFLHEASLRLHRFGRKHLGGGRLNTKKLHPCYLCDTD 129 TED + LYAC C + + L +H+ E S Q + + +IF C YCDE + L H G R+ + HPC +CDTD Sbjct: 161 TEDQV--LYACSKCDSSFNSYKLLKQHIRCEHCQSKATQKD---------KDSIFEEYPCYYCDETIFSTSELEKHATSCHE--GIRMIEEYWHPCDICDTD 427
BLAST of EMLSAG00000007918 vs. C. finmarchicus
Match: gi|592846171|gb|GAXK01111373.1| (TSA: Calanus finmarchicus comp52538_c2_seq2 transcribed RNA sequence) HSP 1 Score: 35.8094 bits (81), Expect = 6.676e-1 Identity = 20/56 (35.71%), Postives = 30/56 (53.57%), Query Frame = 0 Query: 79 PNIFTNLFCDYCDEEFLHEASLRLHRF-------GRKHLGGGRLNTKKLHPCYLCD 127 P++ T CD+C + F ASLR H+ ++HL +LN +LH C +CD Sbjct: 478 PDMETTNQCDFCQQSFATPASLRRHQIVHDRVFVKKEHLSPSKLN--QLHACKVCD 639
BLAST of EMLSAG00000007918 vs. C. finmarchicus
Match: gi|592846172|gb|GAXK01111372.1| (TSA: Calanus finmarchicus comp52538_c2_seq1 transcribed RNA sequence) HSP 1 Score: 35.8094 bits (81), Expect = 6.706e-1 Identity = 20/56 (35.71%), Postives = 30/56 (53.57%), Query Frame = 0 Query: 79 PNIFTNLFCDYCDEEFLHEASLRLHRF-------GRKHLGGGRLNTKKLHPCYLCD 127 P++ T CD+C + F ASLR H+ ++HL +LN +LH C +CD Sbjct: 478 PDMETTNQCDFCQQSFATPASLRRHQIVHDRVFVKKEHLSPSKLN--QLHACKVCD 639
BLAST of EMLSAG00000007918 vs. C. finmarchicus
Match: gi|592787296|gb|GAXK01167272.1| (TSA: Calanus finmarchicus comp1193_c26_seq646 transcribed RNA sequence) HSP 1 Score: 33.8834 bits (76), Expect = 8.354e-1 Identity = 28/116 (24.14%), Postives = 56/116 (48.28%), Query Frame = 0 Query: 598 LNNSKSETNELRYS--QVKPXLPIPLKSRKCDVATKIKPVDTMAKKYEIKKVSYTTDKFCRSQQIKNLNETITKTSNESADSDGPTISRSSTFVKNEIDDADPESQSNLKRVKGSH 711 L+N+ + N L+ + +VKP P+ S D I ++ ++ YE++ V Y + SQ++K+ +++ NE ++++ + I + +SNLKR G+H Sbjct: 5 LSNANPQENLLKLAKKEVKPIFPVENPSESFDNEGVIDTMENISSDYEVEHVDYPYSESSFSQEVKD----VSRDFNE-------MMTKNGEVWQCNICGKSAKDKSNLKRHVGTH 319
BLAST of EMLSAG00000007918 vs. C. finmarchicus
Match: gi|592846170|gb|GAXK01111374.1| (TSA: Calanus finmarchicus comp52538_c2_seq3 transcribed RNA sequence) HSP 1 Score: 34.2686 bits (77), Expect = 1.317e+0 Identity = 20/56 (35.71%), Postives = 30/56 (53.57%), Query Frame = 0 Query: 79 PNIFTNLFCDYCDEEFLHEASLRLHRF-------GRKHLGGGRLNTKKLHPCYLCD 127 P++ T CD+C + F ASLR H+ ++HL +LN +LH C +CD Sbjct: 478 PDMETTNQCDFCQQSFATPASLRRHQIVHDRVFVKKEHLSPSKLN--QLHACKVCD 639
BLAST of EMLSAG00000007918 vs. C. finmarchicus
Match: gi|592787191|gb|GAXK01167377.1| (TSA: Calanus finmarchicus comp1193_c26_seq751 transcribed RNA sequence) HSP 1 Score: 32.3426 bits (72), Expect = 2.132e+0 Identity = 24/100 (24.00%), Postives = 47/100 (47.00%), Query Frame = 0 Query: 612 QVKPXLPIPLKSRKCDVATKIKPVDTMAKKYEIKKVSYTTDKFCRSQQIKNLNETITKTSNESADSDGPTISRSSTFVKNEIDDADPESQSNLKRVKGSH 711 +VKP P+ S D I ++ ++ YE++ V Y + SQ++K+ +++ NE ++++ + I + +SNLKR G+H Sbjct: 13 EVKPIFPVENPSESFDNEGVIDTMENISSDYEVEHVDYPYSESSFSQEVKD----VSRDFNE-------MMTKNGEVWQCNICGKSAKDKSNLKRHVGTH 279
BLAST of EMLSAG00000007918 vs. C. finmarchicus
Match: gi|592824245|gb|GAXK01130323.1| (TSA: Calanus finmarchicus comp71471_c1_seq1 transcribed RNA sequence) HSP 1 Score: 33.4982 bits (75), Expect = 2.495e+0 Identity = 23/88 (26.14%), Postives = 34/88 (38.64%), Query Frame = 0 Query: 24 QICPTEDSMPDLYACYSCPYFCKTAQELLRHVHGEEHASAMKQWNSRGKNYNNVQPNIFTNLFCDYCDEEFLHEASLRLHRFGRKHLG 111 Q+ + S + YAC C Y K A L H+ G+ + CD CD +F + +L+ HR+ KH G Sbjct: 174 QVLDIDSSSYNKYACDRCEYQTKNAGHLKAHILGKHEGVKFQ---------------------CDQCDRQFTSKTNLQAHRYS-KHDG 371
BLAST of EMLSAG00000007918 vs. C. finmarchicus
Match: gi|592878738|gb|GAXK01079163.1| (TSA: Calanus finmarchicus comp594313_c0_seq1 transcribed RNA sequence) HSP 1 Score: 32.7278 bits (73), Expect = 5.034e+0 Identity = 30/101 (29.70%), Postives = 35/101 (34.65%), Query Frame = 0 Query: 36 YACYSCPYFCKTAQELLRHVH---GEEHASAMKQWNSRGKNYNNVQPNIFTNLFCDYCDEEFLHEASLRLHRFGRKHLGG------------GRLNTKKLH 121 +AC CP C T Q+L RH+ GE H L C C F+H + H RKHLG G LNT K H Sbjct: 713 FACMYCPKRCATKQDLDRHLRSHSGEAH------------------------LVCQICSRAFVHRKTYTNH--VRKHLGQKPYQCKPCNKDFGALNTLKKH 937
BLAST of EMLSAG00000007918 vs. C. finmarchicus
Match: gi|592789391|gb|GAXK01165177.1| (TSA: Calanus finmarchicus comp788504_c0_seq2 transcribed RNA sequence) HSP 1 Score: 32.7278 bits (73), Expect = 5.157e+0 Identity = 23/86 (26.74%), Postives = 38/86 (44.19%), Query Frame = 0 Query: 18 RRRRSHQICPTEDSMPDLYACYSCPYFCKTAQELLRHVHGEEHASAMKQWNSRGKNYNNVQPNIFTNLFCDYCDEEFLHEASLRLH 103 + RR+H + E+ + D + C CP+ C L HV + H+ A+ L CD C+ +F ++ SLR+H Sbjct: 730 KHRRNHHM-TEEEKLMDFFHCTLCPFRCAEETYLKVHV-SKAHSVAV--------------------LSCDLCESKFSNKDSLRVH 921
BLAST of EMLSAG00000007918 vs. L. salmonis peptides
Match: EMLSAP00000007918 (pep:novel supercontig:LSalAtl2s:LSalAtl2s467:99564:102245:1 gene:EMLSAG00000007918 transcript:EMLSAT00000007918 description:"augustus_masked-LSalAtl2s467-processed-gene-1.14") HSP 1 Score: 1521.52 bits (3938), Expect = 0.000e+0 Identity = 746/746 (100.00%), Postives = 746/746 (100.00%), Query Frame = 0 Query: 1 MRLILQALMQAVLESPLRRRRSHQICPTEDSMPDLYACYSCPYFCKTAQELLRHVHGEEHASAMKQWNSRGKNYNNVQPNIFTNLFCDYCDEEFLHEASLRLHRFGRKHLGGGRLNTKKLHPCYLCDTDKDININNHITEIEHCEKESMAXGFLIFCYQNGFEIPLKISPESLIGFLETLPVASLIPNVKLLRRLFGSDDNPNCPLNDKKLRIFISYTELSGSIYSPELPNKVIDLLTRCSFEEEKCSDTRFDRTTKLFYHSVSVHMVSPTDLLKELLQKIENEELRCEKKNNCCKECHNKSFISSLVYALHKDAHESRIECEHCMLQYKSVVEYCFKDDCGENNVVQSTKNLVDQMIKTVLLTSEIEHPLLIEKQSNKNFKDCHVKKRKRACSSDATDEEGLVGHWLLNCPNVRARKISVASRKKVDDDDSDNSENSVRSSKIVLNGSPQILPESEDEKDINGNLRKKPRLVHTSLPVEKPLRKRLSDKMLNPSLKSQRSENGSKSVKSDTNVRSCRILPTKEAVDPHKKSALDKKLTPRTLQKYLNPRTSPALTNSGLPLTRQNSKSKLNSSKILFKKDDKGLLSTQMNKIRSPNLNNSKSETNELRYSQVKPXLPIPLKSRKCDVATKIKPVDTMAKKYEIKKVSYTTDKFCRSQQIKNLNETITKTSNESADSDGPTISRSSTFVKNEIDDADPESQSNLKRVKGSHESLLFASSPKRLSTKLKSASVERIDLHTKEKLLRN 746 MRLILQALMQAVLESPLRRRRSHQICPTEDSMPDLYACYSCPYFCKTAQELLRHVHGEEHASAMKQWNSRGKNYNNVQPNIFTNLFCDYCDEEFLHEASLRLHRFGRKHLGGGRLNTKKLHPCYLCDTDKDININNHITEIEHCEKESMAXGFLIFCYQNGFEIPLKISPESLIGFLETLPVASLIPNVKLLRRLFGSDDNPNCPLNDKKLRIFISYTELSGSIYSPELPNKVIDLLTRCSFEEEKCSDTRFDRTTKLFYHSVSVHMVSPTDLLKELLQKIENEELRCEKKNNCCKECHNKSFISSLVYALHKDAHESRIECEHCMLQYKSVVEYCFKDDCGENNVVQSTKNLVDQMIKTVLLTSEIEHPLLIEKQSNKNFKDCHVKKRKRACSSDATDEEGLVGHWLLNCPNVRARKISVASRKKVDDDDSDNSENSVRSSKIVLNGSPQILPESEDEKDINGNLRKKPRLVHTSLPVEKPLRKRLSDKMLNPSLKSQRSENGSKSVKSDTNVRSCRILPTKEAVDPHKKSALDKKLTPRTLQKYLNPRTSPALTNSGLPLTRQNSKSKLNSSKILFKKDDKGLLSTQMNKIRSPNLNNSKSETNELRYSQVKPXLPIPLKSRKCDVATKIKPVDTMAKKYEIKKVSYTTDKFCRSQQIKNLNETITKTSNESADSDGPTISRSSTFVKNEIDDADPESQSNLKRVKGSHESLLFASSPKRLSTKLKSASVERIDLHTKEKLLRN Sbjct: 1 MRLILQALMQAVLESPLRRRRSHQICPTEDSMPDLYACYSCPYFCKTAQELLRHVHGEEHASAMKQWNSRGKNYNNVQPNIFTNLFCDYCDEEFLHEASLRLHRFGRKHLGGGRLNTKKLHPCYLCDTDKDININNHITEIEHCEKESMAXGFLIFCYQNGFEIPLKISPESLIGFLETLPVASLIPNVKLLRRLFGSDDNPNCPLNDKKLRIFISYTELSGSIYSPELPNKVIDLLTRCSFEEEKCSDTRFDRTTKLFYHSVSVHMVSPTDLLKELLQKIENEELRCEKKNNCCKECHNKSFISSLVYALHKDAHESRIECEHCMLQYKSVVEYCFKDDCGENNVVQSTKNLVDQMIKTVLLTSEIEHPLLIEKQSNKNFKDCHVKKRKRACSSDATDEEGLVGHWLLNCPNVRARKISVASRKKVDDDDSDNSENSVRSSKIVLNGSPQILPESEDEKDINGNLRKKPRLVHTSLPVEKPLRKRLSDKMLNPSLKSQRSENGSKSVKSDTNVRSCRILPTKEAVDPHKKSALDKKLTPRTLQKYLNPRTSPALTNSGLPLTRQNSKSKLNSSKILFKKDDKGLLSTQMNKIRSPNLNNSKSETNELRYSQVKPXLPIPLKSRKCDVATKIKPVDTMAKKYEIKKVSYTTDKFCRSQQIKNLNETITKTSNESADSDGPTISRSSTFVKNEIDDADPESQSNLKRVKGSHESLLFASSPKRLSTKLKSASVERIDLHTKEKLLRN 746 The following BLAST results are available for this feature:
BLAST of EMLSAG00000007918 vs. GO
Analysis Date: 2014-04-02 (Blast vs. GO) Total hits: 0
BLAST of EMLSAG00000007918 vs. C. finmarchicus
Analysis Date: 2014-05-09 (TblastN vs C. finmarchicus TSA) Total hits: 18
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BLAST of EMLSAG00000007918 vs. L. salmonis peptides
Analysis Date: 2014-05-10 (Blastp vs. self) Total hits: 1
BLAST of EMLSAG00000007918 vs. SwissProt
Analysis Date: 2017-02-10 (Blastp vs. SwissProt) Total hits: 0
BLAST of EMLSAG00000007918 vs. Select Arthropod Genomes
Analysis Date: 2017-02-20 (Blastp vs. Selected Arthropods) Total hits: 0
BLAST of EMLSAG00000007918 vs. nr
Analysis Date: 2017-02-20 (Blastp vs. NR (2/2017)) Total hits: 0
BLAST of EMLSAG00000007918 vs. Tigriopus kingsejongenis genes
Analysis Date: 2018-04-18 (Blastp vs. Tigriopus kingsejongensis proteins) Total hits: 0
Alignments
The following features are aligned
Analyses
This gene is derived from or has results from the following analyses
Properties
Cross References
External references for this gene
Relationships
The following mRNA feature(s) are a part of this gene:
Sequences
The following sequences are available for this feature:
gene from alignment at LSalAtl2s467:99564..102245+ Legend: mRNA Hold the cursor over a type above to highlight its positions in the sequence below.>EMLSAG00000007918-690684 ID=EMLSAG00000007918-690684|Name=EMLSAG00000007918|organism=Lepeophtheirus salmonis|type=gene|length=2682bp|location=Sequence derived from alignment at LSalAtl2s467:99564..102245+ (Lepeophtheirus salmonis)back to top Add to Basket
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