EMLSAG00000007918, EMLSAG00000007918-690684 (gene) Lepeophtheirus salmonis
Overview
Associated RNAi Experiments
Homology
BLAST of EMLSAG00000007918 vs. C. finmarchicus
Match: gi|592958363|gb|GAXK01000193.1| (TSA: Calanus finmarchicus comp3227278_c0_seq1 transcribed RNA sequence) HSP 1 Score: 31.187 bits (69), Expect = 5.689e+0 Identity = 26/85 (30.59%), Postives = 36/85 (42.35%), Query Frame = 0 Query: 33 PDLYACYSCPYFCKTAQELLRHVHGEEHASAMKQWNSRGKNYNNVQPNIFTNLFCDYCDEEFLHEASLRLHRFGRKHLGGGRLNT 117 P Y+C C +L +H H EH S + N+ G PN+ CD C F +EA L+ H KH G +L + Sbjct: 98 PKQYSCEICDSIFVRQGDLEKH-HETEHDS---KQNAHG-------PNVLIKNLCDVCLISFQNEAELQQHT--AKHSGNIKLQS 313
BLAST of EMLSAG00000007918 vs. C. finmarchicus
Match: gi|592846912|gb|GAXK01110632.1| (TSA: Calanus finmarchicus comp3395633_c0_seq1 transcribed RNA sequence) HSP 1 Score: 31.5722 bits (70), Expect = 6.155e+0 Identity = 18/58 (31.03%), Postives = 23/58 (39.66%), Query Frame = 0 Query: 54 HVHGEEHASAMKQWNSRGKNYNNVQPNIFTNLFCDYCDEEFLHEASLRLHRFGRKHLG 111 V G + +WN N N +P N FCDYC E + RKH+G Sbjct: 231 EVKGRDEVFVQLEWNEYPSN-ENKKPFFLYNFFCDYC------EIGFEEWKDFRKHVG 383
BLAST of EMLSAG00000007918 vs. C. finmarchicus
Match: gi|592892806|gb|GAXK01065569.1| (TSA: Calanus finmarchicus comp5668_c51_seq4 transcribed RNA sequence) HSP 1 Score: 31.5722 bits (70), Expect = 6.834e+0 Identity = 22/85 (25.88%), Postives = 36/85 (42.35%), Query Frame = 0 Query: 30 DSMPDLYACYSCPYFCKTAQELLRHVHGEEHA----------SAMKQWNSRGKNYNNVQPNIFTNLFCDYCDEEFLHEASLRLHR 104 DS L+ C C + L+RHV + A QW+ + N N++ I FCD C+ + ++ +LR H+ Sbjct: 374 DSKNHLHKCEECGAGFRWKNVLVRHVRSQHEGVRYSCSNCDYQAATQWDLKRHN-NSIHEGI--KYFCDKCEFQATYQNNLRTHK 619
BLAST of EMLSAG00000007918 vs. C. finmarchicus
Match: gi|592789392|gb|GAXK01165176.1| (TSA: Calanus finmarchicus comp788504_c0_seq1 transcribed RNA sequence) HSP 1 Score: 32.3426 bits (72), Expect = 7.055e+0 Identity = 23/86 (26.74%), Postives = 38/86 (44.19%), Query Frame = 0 Query: 18 RRRRSHQICPTEDSMPDLYACYSCPYFCKTAQELLRHVHGEEHASAMKQWNSRGKNYNNVQPNIFTNLFCDYCDEEFLHEASLRLH 103 + RR+H + E+ + D + C CP+ C L HV + H+ A+ L CD C+ +F ++ SLR+H Sbjct: 735 KHRRNHHM-TEEEKLMDFFHCTLCPFRCAEETYLKVHV-SKAHSVAV--------------------LSCDLCESKFSNKDSLRVH 926
BLAST of EMLSAG00000007918 vs. C. finmarchicus
Match: gi|592777266|gb|GAXK01177302.1| (TSA: Calanus finmarchicus comp141307_c0_seq1 transcribed RNA sequence) HSP 1 Score: 32.3426 bits (72), Expect = 7.541e+0 Identity = 28/93 (30.11%), Postives = 42/93 (45.16%), Query Frame = 0 Query: 35 LYACYSCPYFCKTAQELLRHVHGEEHASAMKQWNSRGKNYNNVQPNIFTNLFCDYCDEEFLHEASLRLHRFGRKHLGGGRLNTKKLHPCYLCD 127 LY C C Y KT HASA+K+ S K ++ IF C+ CD +H+++L+ H R H ++ LH C +C+ Sbjct: 439 LYQCQRCDY--KTG-----------HASALKRHQS--KVHDKSMQMIFA---CEACDYHTIHKSALKRHTANR-HQKASQV----LHQCSVCE 648
BLAST of EMLSAG00000007918 vs. C. finmarchicus
Match: gi|592800255|gb|GAXK01154313.1| (TSA: Calanus finmarchicus comp1258121_c0_seq1 transcribed RNA sequence) HSP 1 Score: 31.9574 bits (71), Expect = 8.021e+0 Identity = 20/60 (33.33%), Postives = 29/60 (48.33%), Query Frame = 0 Query: 36 YACYSCPYFCKTA-QELLRHVHGEEHASAMKQWNSRGKNYNNVQPNIFTNLFCDYCDEEF 94 Y C+SC + EL +H+ E+HA+ G ++ NV TNL+C CD F Sbjct: 723 YLCFSCNFHTFGGIPELKKHIEAEQHAT-------NGDHFTNVVEKR-TNLYCSKCDYFF 878
BLAST of EMLSAG00000007918 vs. C. finmarchicus
Match: gi|592830100|gb|GAXK01127444.1| (TSA: Calanus finmarchicus comp1028613_c0_seq1 transcribed RNA sequence) HSP 1 Score: 30.4166 bits (67), Expect = 8.173e+0 Identity = 18/66 (27.27%), Postives = 30/66 (45.45%), Query Frame = 0 Query: 496 LKSQRSENGSKSVKSDTNVRSCRILPTKEAVDPHKKSALDKKLTPRTLQKYLNPRTSPALTNSGLP 561 KS SE +K K + N+ + ++ +E H+K + P++ KYL + S NS P Sbjct: 70 FKSAGSEKWAKKSKQEKNIMTSSVM-WQEVTRTHRKIEENSFFQPKSYDKYLGSKKSAGPMNSATP 264
BLAST of EMLSAG00000007918 vs. C. finmarchicus
Match: gi|592949079|gb|GAXK01009474.1| (TSA: Calanus finmarchicus comp1249795_c0_seq2 transcribed RNA sequence) HSP 1 Score: 31.5722 bits (70), Expect = 9.686e+0 Identity = 26/102 (25.49%), Postives = 43/102 (42.16%), Query Frame = 0 Query: 36 YACYSCPYFCKTAQELLRHVHG----EEHASAM-----KQWNSRGKNYNNVQPNIFTNLFCDYCDEEFLHEASLRLHRFGRKHLGGGRLNTKKLHPCYLCDT 128 + CY C F + +EL RH+ G E H M + +S ++ + + N T CD CD+ + + HR H+G + + C +C T Sbjct: 78 FKCYQCSSFYSSTKELNRHIDGVHYEESHQCKMCPQTFTRKDSLTRHVSLIHSNDATEFACDLCDKLYRTWTDMMRHRRA-IHIGCTKFS------CSVCGT 362
BLAST of EMLSAG00000007918 vs. L. salmonis peptides
Match: EMLSAP00000007918 (pep:novel supercontig:LSalAtl2s:LSalAtl2s467:99564:102245:1 gene:EMLSAG00000007918 transcript:EMLSAT00000007918 description:"augustus_masked-LSalAtl2s467-processed-gene-1.14") HSP 1 Score: 1521.52 bits (3938), Expect = 0.000e+0 Identity = 746/746 (100.00%), Postives = 746/746 (100.00%), Query Frame = 0 Query: 1 MRLILQALMQAVLESPLRRRRSHQICPTEDSMPDLYACYSCPYFCKTAQELLRHVHGEEHASAMKQWNSRGKNYNNVQPNIFTNLFCDYCDEEFLHEASLRLHRFGRKHLGGGRLNTKKLHPCYLCDTDKDININNHITEIEHCEKESMAXGFLIFCYQNGFEIPLKISPESLIGFLETLPVASLIPNVKLLRRLFGSDDNPNCPLNDKKLRIFISYTELSGSIYSPELPNKVIDLLTRCSFEEEKCSDTRFDRTTKLFYHSVSVHMVSPTDLLKELLQKIENEELRCEKKNNCCKECHNKSFISSLVYALHKDAHESRIECEHCMLQYKSVVEYCFKDDCGENNVVQSTKNLVDQMIKTVLLTSEIEHPLLIEKQSNKNFKDCHVKKRKRACSSDATDEEGLVGHWLLNCPNVRARKISVASRKKVDDDDSDNSENSVRSSKIVLNGSPQILPESEDEKDINGNLRKKPRLVHTSLPVEKPLRKRLSDKMLNPSLKSQRSENGSKSVKSDTNVRSCRILPTKEAVDPHKKSALDKKLTPRTLQKYLNPRTSPALTNSGLPLTRQNSKSKLNSSKILFKKDDKGLLSTQMNKIRSPNLNNSKSETNELRYSQVKPXLPIPLKSRKCDVATKIKPVDTMAKKYEIKKVSYTTDKFCRSQQIKNLNETITKTSNESADSDGPTISRSSTFVKNEIDDADPESQSNLKRVKGSHESLLFASSPKRLSTKLKSASVERIDLHTKEKLLRN 746 MRLILQALMQAVLESPLRRRRSHQICPTEDSMPDLYACYSCPYFCKTAQELLRHVHGEEHASAMKQWNSRGKNYNNVQPNIFTNLFCDYCDEEFLHEASLRLHRFGRKHLGGGRLNTKKLHPCYLCDTDKDININNHITEIEHCEKESMAXGFLIFCYQNGFEIPLKISPESLIGFLETLPVASLIPNVKLLRRLFGSDDNPNCPLNDKKLRIFISYTELSGSIYSPELPNKVIDLLTRCSFEEEKCSDTRFDRTTKLFYHSVSVHMVSPTDLLKELLQKIENEELRCEKKNNCCKECHNKSFISSLVYALHKDAHESRIECEHCMLQYKSVVEYCFKDDCGENNVVQSTKNLVDQMIKTVLLTSEIEHPLLIEKQSNKNFKDCHVKKRKRACSSDATDEEGLVGHWLLNCPNVRARKISVASRKKVDDDDSDNSENSVRSSKIVLNGSPQILPESEDEKDINGNLRKKPRLVHTSLPVEKPLRKRLSDKMLNPSLKSQRSENGSKSVKSDTNVRSCRILPTKEAVDPHKKSALDKKLTPRTLQKYLNPRTSPALTNSGLPLTRQNSKSKLNSSKILFKKDDKGLLSTQMNKIRSPNLNNSKSETNELRYSQVKPXLPIPLKSRKCDVATKIKPVDTMAKKYEIKKVSYTTDKFCRSQQIKNLNETITKTSNESADSDGPTISRSSTFVKNEIDDADPESQSNLKRVKGSHESLLFASSPKRLSTKLKSASVERIDLHTKEKLLRN Sbjct: 1 MRLILQALMQAVLESPLRRRRSHQICPTEDSMPDLYACYSCPYFCKTAQELLRHVHGEEHASAMKQWNSRGKNYNNVQPNIFTNLFCDYCDEEFLHEASLRLHRFGRKHLGGGRLNTKKLHPCYLCDTDKDININNHITEIEHCEKESMAXGFLIFCYQNGFEIPLKISPESLIGFLETLPVASLIPNVKLLRRLFGSDDNPNCPLNDKKLRIFISYTELSGSIYSPELPNKVIDLLTRCSFEEEKCSDTRFDRTTKLFYHSVSVHMVSPTDLLKELLQKIENEELRCEKKNNCCKECHNKSFISSLVYALHKDAHESRIECEHCMLQYKSVVEYCFKDDCGENNVVQSTKNLVDQMIKTVLLTSEIEHPLLIEKQSNKNFKDCHVKKRKRACSSDATDEEGLVGHWLLNCPNVRARKISVASRKKVDDDDSDNSENSVRSSKIVLNGSPQILPESEDEKDINGNLRKKPRLVHTSLPVEKPLRKRLSDKMLNPSLKSQRSENGSKSVKSDTNVRSCRILPTKEAVDPHKKSALDKKLTPRTLQKYLNPRTSPALTNSGLPLTRQNSKSKLNSSKILFKKDDKGLLSTQMNKIRSPNLNNSKSETNELRYSQVKPXLPIPLKSRKCDVATKIKPVDTMAKKYEIKKVSYTTDKFCRSQQIKNLNETITKTSNESADSDGPTISRSSTFVKNEIDDADPESQSNLKRVKGSHESLLFASSPKRLSTKLKSASVERIDLHTKEKLLRN 746 The following BLAST results are available for this feature:
BLAST of EMLSAG00000007918 vs. GO
Analysis Date: 2014-04-02 (Blast vs. GO) Total hits: 0
BLAST of EMLSAG00000007918 vs. C. finmarchicus
Analysis Date: 2014-05-09 (TblastN vs C. finmarchicus TSA) Total hits: 18
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BLAST of EMLSAG00000007918 vs. L. salmonis peptides
Analysis Date: 2014-05-10 (Blastp vs. self) Total hits: 1
BLAST of EMLSAG00000007918 vs. SwissProt
Analysis Date: 2017-02-10 (Blastp vs. SwissProt) Total hits: 0
BLAST of EMLSAG00000007918 vs. Select Arthropod Genomes
Analysis Date: 2017-02-20 (Blastp vs. Selected Arthropods) Total hits: 0
BLAST of EMLSAG00000007918 vs. nr
Analysis Date: 2017-02-20 (Blastp vs. NR (2/2017)) Total hits: 0
BLAST of EMLSAG00000007918 vs. Tigriopus kingsejongenis genes
Analysis Date: 2018-04-18 (Blastp vs. Tigriopus kingsejongensis proteins) Total hits: 0
Alignments
The following features are aligned
Analyses
This gene is derived from or has results from the following analyses
Properties
Cross References
External references for this gene
Relationships
The following mRNA feature(s) are a part of this gene:
Sequences
The following sequences are available for this feature:
gene from alignment at LSalAtl2s467:99564..102245+ Legend: mRNA Hold the cursor over a type above to highlight its positions in the sequence below.>EMLSAG00000007918-690684 ID=EMLSAG00000007918-690684|Name=EMLSAG00000007918|organism=Lepeophtheirus salmonis|type=gene|length=2682bp|location=Sequence derived from alignment at LSalAtl2s467:99564..102245+ (Lepeophtheirus salmonis)back to top Add to Basket
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