EMLSAG00000010968, EMLSAG00000010968-693734 (gene) Lepeophtheirus salmonis
Overview
Associated RNAi Experiments
Homology
BLAST of EMLSAG00000010968 vs. C. finmarchicus
Match: gi|592767256|gb|GAXK01187312.1| (TSA: Calanus finmarchicus comp10589_c0_seq1 transcribed RNA sequence) HSP 1 Score: 68.9366 bits (167), Expect = 3.120e-12 Identity = 77/297 (25.93%), Postives = 131/297 (44.11%), Query Frame = 0 Query: 27 QRNCPSGYQYAGEDSSNNRIVSSFNKGFVYYEEVSRSDIYSCYKYIPSKSENDVTYFDAVKGCSDEENHVENKARLISFDDDFNEIQRFANIL--SSYLNGSSSKILTSGLKLPNYSTFVWSSTNE-MYNISEAFIQIQNKTDPKLACLALSINSPHD---FTLEAIDCANTNIKTYVCEVRVQIVTFYAWFVNNSWNXXXXXXXXXXXXXXCMSGFAYRSSPRFERRVQRRPGNVSPGGPNISKIDAPPPYESFVNAQCAHEGLPPKYDSNAQAPSRLEQIKNKGKDILATVTVFK 317 QR+CPSG+ YAGE + ++KG S +YSCY S + D+ + A + C E + +L+S +++ E + S+ G+ +++LTSG+ L + W E M + + + D + CL +S + + T A+ C + + VCEVRV T+Y W N ++ LF++ +L + C++ Y S P R QRR +S PPPY H+ + +AP++ + KGK++LA V ++ Sbjct: 205 QRDCPSGFFYAGEVPEVETMGEIWSKG-------ETSPVYSCY----SIQQGDMDWVTANQKC------FEQRGQLLSINNNQEEAILGGELFLSMSHFQGNETEVLTSGISLKE-GNWTWFGAGEPMVDTIANQLDASDSNDTQ--CLVVSWDQGANGTTLTYTALPCMDV-YTSAVCEVRVYTQTWYVWATTNWLQILFLFTLVLLIVSSCVTVQIYSSRPGL--RNQRRSNEMSV---------TPPPYS-------PHD---VNMTTTTKAPNKYAE---KGKELLAKVVFYR 960
BLAST of EMLSAG00000010968 vs. L. salmonis peptides
Match: EMLSAP00000010968 (pep:novel supercontig:LSalAtl2s:LSalAtl2s735:89985:91812:-1 gene:EMLSAG00000010968 transcript:EMLSAT00000010968 description:"maker-LSalAtl2s735-augustus-gene-1.11") HSP 1 Score: 662.144 bits (1707), Expect = 0.000e+0 Identity = 320/320 (100.00%), Postives = 320/320 (100.00%), Query Frame = 0 Query: 1 MDLKSGIIALTLFFTLLQFTLGNEVNQRNCPSGYQYAGEDSSNNRIVSSFNKGFVYYEEVSRSDIYSCYKYIPSKSENDVTYFDAVKGCSDEENHVENKARLISFDDDFNEIQRFANILSSYLNGSSSKILTSGLKLPNYSTFVWSSTNEMYNISEAFIQIQNKTDPKLACLALSINSPHDFTLEAIDCANTNIKTYVCEVRVQIVTFYAWFVNNSWNLVLLFSISILGIGLCMSGFAYRSSPRFERRVQRRPGNVSPGGPNISKIDAPPPYESFVNAQCAHEGLPPKYDSNAQAPSRLEQIKNKGKDILATVTVFKTRY 320 MDLKSGIIALTLFFTLLQFTLGNEVNQRNCPSGYQYAGEDSSNNRIVSSFNKGFVYYEEVSRSDIYSCYKYIPSKSENDVTYFDAVKGCSDEENHVENKARLISFDDDFNEIQRFANILSSYLNGSSSKILTSGLKLPNYSTFVWSSTNEMYNISEAFIQIQNKTDPKLACLALSINSPHDFTLEAIDCANTNIKTYVCEVRVQIVTFYAWFVNNSWNLVLLFSISILGIGLCMSGFAYRSSPRFERRVQRRPGNVSPGGPNISKIDAPPPYESFVNAQCAHEGLPPKYDSNAQAPSRLEQIKNKGKDILATVTVFKTRY Sbjct: 1 MDLKSGIIALTLFFTLLQFTLGNEVNQRNCPSGYQYAGEDSSNNRIVSSFNKGFVYYEEVSRSDIYSCYKYIPSKSENDVTYFDAVKGCSDEENHVENKARLISFDDDFNEIQRFANILSSYLNGSSSKILTSGLKLPNYSTFVWSSTNEMYNISEAFIQIQNKTDPKLACLALSINSPHDFTLEAIDCANTNIKTYVCEVRVQIVTFYAWFVNNSWNLVLLFSISILGIGLCMSGFAYRSSPRFERRVQRRPGNVSPGGPNISKIDAPPPYESFVNAQCAHEGLPPKYDSNAQAPSRLEQIKNKGKDILATVTVFKTRY 320
BLAST of EMLSAG00000010968 vs. Tigriopus kingsejongenis genes
Match: maker-scaffold490_size156733-snap-gene-0.21 (protein:Tk04107 transcript:maker-scaffold490_size156733-snap-gene-0.21-mRNA-1 annotation:"t-cell surface glycoprotein cd3 epsilon chain-like") HSP 1 Score: 90.5077 bits (223), Expect = 4.969e-21 Identity = 86/306 (28.10%), Postives = 135/306 (44.12%), Query Frame = 0 Query: 28 RNCPSGYQYAGEDS---SNNRIVSSFNKGFVYYEEVSRSDIYSCYKYIPSKSENDVTYFDAVKGCSDEENHVENKARLISFDDDFNEIQRFANILSSYLNGSSSKILTSGLKLPNYSTFVWSSTNEMYNISEAFIQIQNKTDPKLACLALSINSPHDFTLEAIDCANTNIKTYVCEVRVQIVTFYAWFVNNSWNLVLLFSISILGIGLCMSGFAYRSSPRFER-RVQRRPGNVSPGGPNISK-------IDAPPPYESFVNAQCA----HEGLPPKYDSNAQ-APSRLEQIKNKGKDILATVTVFK 317 R CP GY YAGED+ + N+ + V+YEEV RS +YSCYK + K +T+ A+ C D++ A+L+S +D+F I+ + + + TSG+ + + + W + A+ H+F +CE RVQ VT+YAWF N +L+L + IL I LC+S + SS R + QRR N P P + D PP Y++ VN LP K N +R+E I+N+G++++ + V++ Sbjct: 51 RLCPDGYYYAGEDTPPGALNKSGFALEDRDVWYEEVDRSLLYSCYKAMGEK----MTFLKAMHRCWDDD------AQLVSTEDNFENIRIWNLFYRDSTRDKKNALFTSGMYMYDIEEWQWLGS------------------------AVPCGMEHEF---------------ICEARVQTVTYYAWFRGNWIDLLLGLLLVILFISLCVSLCSISSSGSASRGQAQRRGAN--PRRPRTTDPNSEFTLSDLPPSYDTTVNIHQPIDQDKNQLPAKSAINGPVGNTRMEHIQNRGRELMGKLYVYR 305 The following BLAST results are available for this feature:
BLAST of EMLSAG00000010968 vs. GO
Analysis Date: 2014-04-02 (Blast vs. GO) Total hits: 0
BLAST of EMLSAG00000010968 vs. C. finmarchicus
Analysis Date: 2014-05-09 (TblastN vs C. finmarchicus TSA) Total hits: 1
BLAST of EMLSAG00000010968 vs. L. salmonis peptides
Analysis Date: 2014-05-10 (Blastp vs. self) Total hits: 1
BLAST of EMLSAG00000010968 vs. SwissProt
Analysis Date: 2017-02-10 (Blastp vs. SwissProt) Total hits: 0
BLAST of EMLSAG00000010968 vs. Select Arthropod Genomes
Analysis Date: 2017-02-20 (Blastp vs. Selected Arthropods) Total hits: 0
BLAST of EMLSAG00000010968 vs. nr
Analysis Date: 2017-02-20 (Blastp vs. NR (2/2017)) Total hits: 0
BLAST of EMLSAG00000010968 vs. Tigriopus kingsejongenis genes
Analysis Date: 2018-04-18 (Blastp vs. Tigriopus kingsejongensis proteins) Total hits: 1
Alignments
The following features are aligned
Analyses
This gene is derived from or has results from the following analyses
Properties
Cross References
External references for this gene
Relationships
The following mRNA feature(s) are a part of this gene:
Sequences
The following sequences are available for this feature:
gene from alignment at LSalAtl2s735:89985..91812- Legend: mRNA Hold the cursor over a type above to highlight its positions in the sequence below.>EMLSAG00000010968-693734 ID=EMLSAG00000010968-693734|Name=EMLSAG00000010968|organism=Lepeophtheirus salmonis|type=gene|length=1828bp|location=Sequence derived from alignment at LSalAtl2s735:89985..91812- (Lepeophtheirus salmonis)back to top Add to Basket
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