EMLSAG00000010968, EMLSAG00000010968-693734 (gene) Lepeophtheirus salmonis

Overview
NameEMLSAG00000010968
Unique NameEMLSAG00000010968-693734
Typegene
OrganismLepeophtheirus salmonis (salmon louse)
Associated RNAi Experiments
Table of all RNA interference experiments conducted using this feature, grouped by Phenotype CV: -Missing-
Gallery Image Title Gene or target symbol Sex/Stage Phenotype Datesort descending
AR F249 female
  1. PreAdult2
No visible phenotype
-Missing-
16.08.2018 - 09:00
20.09.2018 - 09:00
Homology
BLAST of EMLSAG00000010968 vs. C. finmarchicus
Match: gi|592767256|gb|GAXK01187312.1| (TSA: Calanus finmarchicus comp10589_c0_seq1 transcribed RNA sequence)

HSP 1 Score: 68.9366 bits (167), Expect = 3.120e-12
Identity = 77/297 (25.93%), Postives = 131/297 (44.11%), Query Frame = 0
Query:   27 QRNCPSGYQYAGEDSSNNRIVSSFNKGFVYYEEVSRSDIYSCYKYIPSKSENDVTYFDAVKGCSDEENHVENKARLISFDDDFNEIQRFANIL--SSYLNGSSSKILTSGLKLPNYSTFVWSSTNE-MYNISEAFIQIQNKTDPKLACLALSINSPHD---FTLEAIDCANTNIKTYVCEVRVQIVTFYAWFVNNSWNXXXXXXXXXXXXXXCMSGFAYRSSPRFERRVQRRPGNVSPGGPNISKIDAPPPYESFVNAQCAHEGLPPKYDSNAQAPSRLEQIKNKGKDILATVTVFK 317
            QR+CPSG+ YAGE      +   ++KG         S +YSCY    S  + D+ +  A + C       E + +L+S +++  E      +    S+  G+ +++LTSG+ L     + W    E M +     +   +  D +  CL +S +   +    T  A+ C +    + VCEVRV   T+Y W   N   ++ LF++ +L +  C++   Y S P    R QRR   +S           PPPY         H+       +  +AP++  +   KGK++LA V  ++
Sbjct:  205 QRDCPSGFFYAGEVPEVETMGEIWSKG-------ETSPVYSCY----SIQQGDMDWVTANQKC------FEQRGQLLSINNNQEEAILGGELFLSMSHFQGNETEVLTSGISLKE-GNWTWFGAGEPMVDTIANQLDASDSNDTQ--CLVVSWDQGANGTTLTYTALPCMDV-YTSAVCEVRVYTQTWYVWATTNWLQILFLFTLVLLIVSSCVTVQIYSSRPGL--RNQRRSNEMSV---------TPPPYS-------PHD---VNMTTTTKAPNKYAE---KGKELLAKVVFYR 960          
BLAST of EMLSAG00000010968 vs. L. salmonis peptides
Match: EMLSAP00000010968 (pep:novel supercontig:LSalAtl2s:LSalAtl2s735:89985:91812:-1 gene:EMLSAG00000010968 transcript:EMLSAT00000010968 description:"maker-LSalAtl2s735-augustus-gene-1.11")

HSP 1 Score: 662.144 bits (1707), Expect = 0.000e+0
Identity = 320/320 (100.00%), Postives = 320/320 (100.00%), Query Frame = 0
Query:    1 MDLKSGIIALTLFFTLLQFTLGNEVNQRNCPSGYQYAGEDSSNNRIVSSFNKGFVYYEEVSRSDIYSCYKYIPSKSENDVTYFDAVKGCSDEENHVENKARLISFDDDFNEIQRFANILSSYLNGSSSKILTSGLKLPNYSTFVWSSTNEMYNISEAFIQIQNKTDPKLACLALSINSPHDFTLEAIDCANTNIKTYVCEVRVQIVTFYAWFVNNSWNLVLLFSISILGIGLCMSGFAYRSSPRFERRVQRRPGNVSPGGPNISKIDAPPPYESFVNAQCAHEGLPPKYDSNAQAPSRLEQIKNKGKDILATVTVFKTRY 320
            MDLKSGIIALTLFFTLLQFTLGNEVNQRNCPSGYQYAGEDSSNNRIVSSFNKGFVYYEEVSRSDIYSCYKYIPSKSENDVTYFDAVKGCSDEENHVENKARLISFDDDFNEIQRFANILSSYLNGSSSKILTSGLKLPNYSTFVWSSTNEMYNISEAFIQIQNKTDPKLACLALSINSPHDFTLEAIDCANTNIKTYVCEVRVQIVTFYAWFVNNSWNLVLLFSISILGIGLCMSGFAYRSSPRFERRVQRRPGNVSPGGPNISKIDAPPPYESFVNAQCAHEGLPPKYDSNAQAPSRLEQIKNKGKDILATVTVFKTRY
Sbjct:    1 MDLKSGIIALTLFFTLLQFTLGNEVNQRNCPSGYQYAGEDSSNNRIVSSFNKGFVYYEEVSRSDIYSCYKYIPSKSENDVTYFDAVKGCSDEENHVENKARLISFDDDFNEIQRFANILSSYLNGSSSKILTSGLKLPNYSTFVWSSTNEMYNISEAFIQIQNKTDPKLACLALSINSPHDFTLEAIDCANTNIKTYVCEVRVQIVTFYAWFVNNSWNLVLLFSISILGIGLCMSGFAYRSSPRFERRVQRRPGNVSPGGPNISKIDAPPPYESFVNAQCAHEGLPPKYDSNAQAPSRLEQIKNKGKDILATVTVFKTRY 320          
BLAST of EMLSAG00000010968 vs. Tigriopus kingsejongenis genes
Match: maker-scaffold490_size156733-snap-gene-0.21 (protein:Tk04107 transcript:maker-scaffold490_size156733-snap-gene-0.21-mRNA-1 annotation:"t-cell surface glycoprotein cd3 epsilon chain-like")

HSP 1 Score: 90.5077 bits (223), Expect = 4.969e-21
Identity = 86/306 (28.10%), Postives = 135/306 (44.12%), Query Frame = 0
Query:   28 RNCPSGYQYAGEDS---SNNRIVSSFNKGFVYYEEVSRSDIYSCYKYIPSKSENDVTYFDAVKGCSDEENHVENKARLISFDDDFNEIQRFANILSSYLNGSSSKILTSGLKLPNYSTFVWSSTNEMYNISEAFIQIQNKTDPKLACLALSINSPHDFTLEAIDCANTNIKTYVCEVRVQIVTFYAWFVNNSWNLVLLFSISILGIGLCMSGFAYRSSPRFER-RVQRRPGNVSPGGPNISK-------IDAPPPYESFVNAQCA----HEGLPPKYDSNAQ-APSRLEQIKNKGKDILATVTVFK 317
            R CP GY YAGED+   + N+   +     V+YEEV RS +YSCYK +  K    +T+  A+  C D++      A+L+S +D+F  I+ +            + + TSG+ + +   + W  +                        A+     H+F               +CE RVQ VT+YAWF  N  +L+L   + IL I LC+S  +  SS    R + QRR  N  P  P  +         D PP Y++ VN           LP K   N     +R+E I+N+G++++  + V++
Sbjct:   51 RLCPDGYYYAGEDTPPGALNKSGFALEDRDVWYEEVDRSLLYSCYKAMGEK----MTFLKAMHRCWDDD------AQLVSTEDNFENIRIWNLFYRDSTRDKKNALFTSGMYMYDIEEWQWLGS------------------------AVPCGMEHEF---------------ICEARVQTVTYYAWFRGNWIDLLLGLLLVILFISLCVSLCSISSSGSASRGQAQRRGAN--PRRPRTTDPNSEFTLSDLPPSYDTTVNIHQPIDQDKNQLPAKSAINGPVGNTRMEHIQNRGRELMGKLYVYR 305          
The following BLAST results are available for this feature:
BLAST of EMLSAG00000010968 vs. GO
Analysis Date: 2014-04-02 (Blast vs. GO)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000010968 vs. C. finmarchicus
Analysis Date: 2014-05-09 (TblastN vs C. finmarchicus TSA)
Total hits: 1
Match NameE-valueIdentityDescription
gi|592767256|gb|GAXK01187312.1|3.120e-1225.93TSA: Calanus finmarchicus comp10589_c0_seq1 transc... [more]
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BLAST of EMLSAG00000010968 vs. L. salmonis peptides
Analysis Date: 2014-05-10 (Blastp vs. self)
Total hits: 1
Match NameE-valueIdentityDescription
EMLSAP000000109680.000e+0100.00pep:novel supercontig:LSalAtl2s:LSalAtl2s735:89985... [more]
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BLAST of EMLSAG00000010968 vs. SwissProt
Analysis Date: 2017-02-10 (Blastp vs. SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000010968 vs. Select Arthropod Genomes
Analysis Date: 2017-02-20 (Blastp vs. Selected Arthropods)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000010968 vs. nr
Analysis Date: 2017-02-20 (Blastp vs. NR (2/2017))
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000010968 vs. Tigriopus kingsejongenis genes
Analysis Date: 2018-04-18 (Blastp vs. Tigriopus kingsejongensis proteins)
Total hits: 1
Match NameE-valueIdentityDescription
maker-scaffold490_size156733-snap-gene-0.214.969e-2128.10protein:Tk04107 transcript:maker-scaffold490_size1... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
LSalAtl2s735supercontigLSalAtl2s735:89985..91812 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
ensembl2013-09-26 .965016
Blast vs. GO2014-04-02
TblastN vs C. finmarchicus TSA2014-05-09
Blastp vs. self2014-05-10
Blastp vs. SwissProt2017-02-10
Blastp vs. Selected Arthropods2017-02-20
Blastp vs. NR (2/2017)2017-02-20
Blastp vs. Tigriopus kingsejongensis proteins2018-04-18
Properties
Property NameValue
Logic nameensemblgenomes
Descriptionmaker-LSalAtl2s735-augustus-gene-1.11
Biotypeprotein_coding
EvidenceIEA
NoteHypothetical protein
Cross References
External references for this gene
DatabaseAccession
Ensembl Metazoa (gene)EMLSAG00000010968 (primary cross-reference)
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
EMLSAT00000010968EMLSAT00000010968-706815Lepeophtheirus salmonismRNA


Sequences
The following sequences are available for this feature:

gene from alignment at LSalAtl2s735:89985..91812-

Legend: mRNA
Hold the cursor over a type above to highlight its positions in the sequence below.
>EMLSAG00000010968-693734 ID=EMLSAG00000010968-693734|Name=EMLSAG00000010968|organism=Lepeophtheirus salmonis|type=gene|length=1828bp|location=Sequence derived from alignment at LSalAtl2s735:89985..91812- (Lepeophtheirus salmonis)
ATGGACTTAAAGTCAGGAATAATTGCTCTCACTCTATTCTTTACACTACT TCAATTCACATTAGGGAATGAAGTTAATCAGAGAAGTACGTATACATTGT TTTCCATAATTTAAAATAACCTTGGTTGATATATATATGAAAATTAAAAT TTTTAGGTATTACTTAATTTTAGACCTTGTCTTTTTATTAAGAACTTCTA AGCTGGTCCATGAAGATACGGAAACTTATTTATTACTAGTATGAATCATG GCCTCTCCAACTTCCCCTATGGTGGTGCCTCTGATTGTACCATACCATTA ATTATGATGTAATCTTTTTGACTGTTTGAGAAAAAGGACCTTTTTGCATT TGTCTCTAGTCTCTTTTACATATACATATTAGCCATATTTTTTGTATATA TAATTTKTCATGATTYAATNTTTATAAAAATGACGAATTCAACTTTCTTT TTTTTTTTTTTTTTTTTTGTAAGGGATAACGTCATTTAAATGAGATAAAA AAAATACATACCATGACATAATAATAAATATGTTTTGATTAAACCACAAA TAATATGTCGATAAGTTACATCATAGAAAACAGTACTTGTTGCTCTATGA ACTATTTTTTAAAAAATACATGGAACACCGAATACATATACTTCTATGTA TTGCAATTAATTTCCTTTGTTGGGATATTTTCTTATCTTATCCCACTTAT AAGTACATAACATCATTGAACATTGATCATTTATTCCTCTATAAATAAGA AATAAAGTATTGCACCTGTTTATATAACATGAAAACTTTTATAATGATAA ATATGAGATAATCAATTATTATCTGTTCAAATTCATACGTTTTATTTAAA TTCCTAGATTGTCCTAGTGGATATCAATATGCTGGAGAAGATTCTTCAAA TAATAGAATCGTAAGTTCATTTAACAAAGGATTTGTATATTATGAAGAGG TGAGTAGATCAGATATATACTCGTGCTACAAGTATATCCCCTCCAAATCC GAAAATGATGTCACTTACTTTGATGCTGTCAAAGGTTGTTCTGATGAAGA AAATCATGTGGAAAATAAAGCTCGACTCATTAGTTTTGATGATGATTTTA ATGAAATACAAAGATTTGCGAATATTCTATCTTCTTATTTGAATGGATCT TCTTCTAAGATCCTCACGTCTGGACTAAAGTTACCAAATTATAGCACATT TGTTTGGAGCTCTACAAGTAAGTGTCGTCCAACTTTGATTTCATTTATAA TACATATTATGTATCAAGTTACTGAATCCAAATGATTAAATCTTTAATAT ACTTATATAGATGAAATGTACAACATCTCTGAGGCTTTCATTCAAATCCA AAATAAAACTGACCCAAAATTGGCATGTTTGGCCCTGTCCATTAATTCCC CACATGATTTTACTCTTGAAGCTATTGATTGTGCAAATACGAATATTAAA ACATACGTCTGTGAAGTGCGCGTTCAAATAGTAACTTTTTACGCCTGGTT TGTGAATAATAGTTGGAATTTGGTTCTCTTATTTTCAATCAGTATTTTGG GAATTGGTTTATGTATGTCTGGCTTTGCTTATAGATCCTCACCAAGATTT GAAAGGCGAGTGCAAAGGAGACCGGGAAATGTTTCACCTGGAGGACCAAA TATTAGTAAAATTGATGCTCCTCCACCATATGAAAGCTTTGTTAATGCTC AATGTGCCCATGAAGGACTACCTCCAAAGTACGACTCCAATGCACAAGCA CCAAGTCGTTTGGAACAAATAAAAAATAAGGGAAAAGATATCCTTGCCAC TGTTACTGTTTTTAAAACAAGATATTAA
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