EMLSAG00000012828, EMLSAG00000012828-695594 (gene) Lepeophtheirus salmonis
Overview
Associated RNAi Experiments
Homology
BLAST of EMLSAG00000012828 vs. C. finmarchicus
Match: gi|592769724|gb|GAXK01184844.1| (TSA: Calanus finmarchicus comp2321117_c0_seq1 transcribed RNA sequence) HSP 1 Score: 35.8094 bits (81), Expect = 8.276e-2 Identity = 17/34 (50.00%), Postives = 22/34 (64.71%), Query Frame = 0 Query: 201 IHSLTARSVPRHFREGLKKGLTHFTDKNIKIPGS 234 +HS+TARSV R FR+ LK TD +K+P S Sbjct: 262 VHSITARSVSREFRDVLKMSKPELTDAIMKLPRS 363
BLAST of EMLSAG00000012828 vs. L. salmonis peptides
Match: EMLSAP00000012828 (pep:novel supercontig:LSalAtl2s:LSalAtl2s979:4:5108:1 gene:EMLSAG00000012828 transcript:EMLSAT00000012828 description:"maker-LSalAtl2s979-augustus-gene-0.3") HSP 1 Score: 717.998 bits (1852), Expect = 0.000e+0 Identity = 350/350 (100.00%), Postives = 350/350 (100.00%), Query Frame = 0 Query: 1 MDSTTKTMPHCPVKSKITLGEISVVHYESLDDEKEATSTTTHSTKTTTSIQQQQPFVSSVYLNCPDGYVRDASPTEDDEPYYYDVPSDLDKIRLINPKSKHSSVWSFVDVCLNNNNNEKDVPKEEIETTQGSEEEDHRLYLCPILIDDNTHSDSISSCSTNYNNNHYYYYIPLKEETMSAVIGIHDFENEPIPTFKFKEPIHSLTARSVPRHFREGLKKGLTHFTDKNIKIPGSDSTIHSRNYGNSEEDYYDDDEESSHVIYDSKKKYQSSSVSSNNNTMESTRTPSPEHVGIPASRVRLTPKKRSDVTTTYCYTSDESTNNELYEHKTHHPPPSARRKQIIQQRLQNQI 350 MDSTTKTMPHCPVKSKITLGEISVVHYESLDDEKEATSTTTHSTKTTTSIQQQQPFVSSVYLNCPDGYVRDASPTEDDEPYYYDVPSDLDKIRLINPKSKHSSVWSFVDVCLNNNNNEKDVPKEEIETTQGSEEEDHRLYLCPILIDDNTHSDSISSCSTNYNNNHYYYYIPLKEETMSAVIGIHDFENEPIPTFKFKEPIHSLTARSVPRHFREGLKKGLTHFTDKNIKIPGSDSTIHSRNYGNSEEDYYDDDEESSHVIYDSKKKYQSSSVSSNNNTMESTRTPSPEHVGIPASRVRLTPKKRSDVTTTYCYTSDESTNNELYEHKTHHPPPSARRKQIIQQRLQNQI Sbjct: 1 MDSTTKTMPHCPVKSKITLGEISVVHYESLDDEKEATSTTTHSTKTTTSIQQQQPFVSSVYLNCPDGYVRDASPTEDDEPYYYDVPSDLDKIRLINPKSKHSSVWSFVDVCLNNNNNEKDVPKEEIETTQGSEEEDHRLYLCPILIDDNTHSDSISSCSTNYNNNHYYYYIPLKEETMSAVIGIHDFENEPIPTFKFKEPIHSLTARSVPRHFREGLKKGLTHFTDKNIKIPGSDSTIHSRNYGNSEEDYYDDDEESSHVIYDSKKKYQSSSVSSNNNTMESTRTPSPEHVGIPASRVRLTPKKRSDVTTTYCYTSDESTNNELYEHKTHHPPPSARRKQIIQQRLQNQI 350
BLAST of EMLSAG00000012828 vs. Tigriopus kingsejongenis genes
Match: maker-scaffold186_size273091-snap-gene-1.41 (protein:Tk00926 transcript:maker-scaffold186_size273091-snap-gene-1.41-mRNA-1 annotation:"hypothetical protein L798_13876") HSP 1 Score: 62.003 bits (149), Expect = 7.536e-12 Identity = 44/118 (37.29%), Postives = 56/118 (47.46%), Query Frame = 0 Query: 201 IHSLTARSVPRHFREGLKKGLTHFTDKNIK-----------IPGSDSTIHSRNYGNSEEDYYDDDEESS--HVIYDSKKKYQSSSVSSNNNTMESTRTPSPEHVGIPASRVRLTPKKR 305 IHSLTARSVPR FREGLKKG+ D+NIK + + T S + ++ H+IYDS+ K E R+PSPEH GIPA V + + R Sbjct: 45 IHSLTARSVPRQFREGLKKGMPFLADRNIKTATDPPRTPWDVTTGEGTQSSPPISAPSTSQPRGSKPTTPLHIIYDSENKDLVPYPEG-----EFIRSPSPEHSGIPALPVTMRLRSR 157 The following BLAST results are available for this feature:
BLAST of EMLSAG00000012828 vs. GO
Analysis Date: 2014-04-02 (Blast vs. GO) Total hits: 0
BLAST of EMLSAG00000012828 vs. C. finmarchicus
Analysis Date: 2014-05-09 (TblastN vs C. finmarchicus TSA) Total hits: 11
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BLAST of EMLSAG00000012828 vs. L. salmonis peptides
Analysis Date: 2014-05-10 (Blastp vs. self) Total hits: 1
BLAST of EMLSAG00000012828 vs. SwissProt
Analysis Date: 2017-02-10 (Blastp vs. SwissProt) Total hits: 0
BLAST of EMLSAG00000012828 vs. Select Arthropod Genomes
Analysis Date: 2017-02-20 (Blastp vs. Selected Arthropods) Total hits: 0
BLAST of EMLSAG00000012828 vs. nr
Analysis Date: 2017-02-20 (Blastp vs. NR (2/2017)) Total hits: 0
BLAST of EMLSAG00000012828 vs. Tigriopus kingsejongenis genes
Analysis Date: 2018-04-18 (Blastp vs. Tigriopus kingsejongensis proteins) Total hits: 1
Alignments
The following features are aligned
Analyses
This gene is derived from or has results from the following analyses
Properties
Cross References
External references for this gene
Relationships
The following mRNA feature(s) are a part of this gene:
Sequences
The following sequences are available for this feature:
gene from alignment at LSalAtl2s979:4..5108+ Legend: mRNA Hold the cursor over a type above to highlight its positions in the sequence below.>EMLSAG00000012828-695594 ID=EMLSAG00000012828-695594|Name=EMLSAG00000012828|organism=Lepeophtheirus salmonis|type=gene|length=5105bp|location=Sequence derived from alignment at LSalAtl2s979:4..5108+ (Lepeophtheirus salmonis)back to top Add to Basket
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