EMLSAT00000001069, EMLSAT00000001069-696916 (mRNA) Lepeophtheirus salmonis

Overview
NameEMLSAT00000001069
Unique NameEMLSAT00000001069-696916
TypemRNA
OrganismLepeophtheirus salmonis (salmon louse)
Associated RNAi Experiments
Table of all RNA interference experiments conducted using this feature, grouped by Phenotype CV: survival, reduced
Gallery Image Title Gene or target symbol Sex/Stage Phenotype Datesort descending Publication
Functional characterization of a heme Peroxidase (male) F159 HPX1 Male
  1. padII/ad
  2. Adult
 Fall off the fish
survival, reduced 		30.05.2014 - 12:30
10.06.2014 - 12:33 		Molecular characterization and functional... more
Functional characterization of a heme Peroxidase (female) F159 HPX1 Female
  1. PreAdult1
  2. PreAdult2/Adult
 Fall off the fish
survival, reduced 		30.05.2014 - 12:30
10.06.2014 - 12:33 		Molecular characterization and functional... more
Table of all RNA interference experiments conducted using this feature, grouped by Phenotype CV: -Missing-
Gallery Image Title Gene or target symbol Sex/Stage Phenotype Datesort descending
V F159 both
  1. PreAdult1
  2. PreAdult2
 none, normal morphology and digestion
-Missing- 		10.01.2015 - 13:16
20.01.2015 - 00:00
Table of all RNA interference experiments conducted using this feature, grouped by Phenotype CV: Motility, reduced
Gallery Image Title Gene or target symbol Sex/Stage Phenotype Datesort descending Publication
Functional characterization of a heme Peroxidase (Nauplia) F159 HPX1 both
  1. Nauplius1
  2. Copepodid
 Decreased swimming activity
Motility, reduced 		07.06.2016 - 12:30
17.06.2016 - 12:33 		Molecular characterization and functional... more
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
LSalAtl2s117supercontigLSalAtl2s117:1071016..1073247 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
ensembl2013-09-26 .965016
Properties
Property NameValue
Logic nameensemblgenomes
Biotypeprotein_coding
EvidenceIEA
Cross References
External references for this mRNA
DatabaseAccession
Ensembl Metazoa (transcript)EMLSAT00000001069 (primary cross-reference)
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
EMLSAG00000001069EMLSAG00000001069-683835Lepeophtheirus salmonisgene


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EMLSAE00000004710EMLSAE00000004710-713638Lepeophtheirus salmonisexon


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
polypeptide-auto780370auto780370Lepeophtheirus salmonispolypeptide
EMLSAP00000001069EMLSAP00000001069Lepeophtheirus salmonispolypeptide


Sequences
The following sequences are available for this feature:

protein sequence of EMLSAP00000001069

>EMLSAP00000001069 ID=EMLSAP00000001069|Name=EMLSAP00000001069|organism=Lepeophtheirus salmonis|type=polypeptide|length=743bp
MFHISMRFSSIILLLTTLLSPALSFGPQAPSSSSSGCALIIPGPGRSSAF
DHGSRVFGGSSFDYQGSNTCITYEAVNAAFTTALERVGLPPVRGKFTTDD
VGNLGTVIHETSRYLAKQYGLSKDAISNGLPLIDTTKTIIEGYCPPFLMT
PKCTVERYRSVNGMCNNVEHPHWGAAMNGHHRFLAPNFADGISAPRASKT
GNPLPSARIVSSNMHRDEGFHDHAVTILLVAWGQFIDHDITLSAETKDPR
TGKTPKCCEEGQTAVHPNCLPIEIPSHDTFFSKHKQRCMNFVRSQAGLRY
NCRLGPRDTFNEVSSLLDAGTVYSNSDETLESLRLYKDGLLKMLPVFNEF
EMKELLPLKLESPDEGCIRPSEDVYCFLAGDAXVNEQTVLAMIHTLFARE
HNRIAGELKKVNPHWNDETIFQETRHIIAALISHINYNEFLPMVLGKEVM
QQHDLILLKNGYSNSYDTFTNPSASTVFVSAAFRFGHSLLPSTIERWSKT
HRYIGSQRLSEMLQQPYDLYKAGWADNYLMGLVNQVAQALDDSLSQEVTN
HLFQEPGKKFGLDLAALNIQRAREHGVPGYNGWREWXGLPKIHRWSDLRG
LMSNSSVHGYASIYESPDDIDIWSAGITEKPLPGSMIGPTLACIIGKQFH
NLRHGDRYWYENGGWPSSFTLEQLEEIRKIKFSRILCDNSDTIENMQVYA
MVLPDHEINPRVPCKSGVLPRIDFSKWRDASYHPSPSSPYSPF
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mRNA from alignment at LSalAtl2s117:1071016..1073247+

Legend: polypeptideexon
Hold the cursor over a type above to highlight its positions in the sequence below.
>EMLSAT00000001069-696916 ID=EMLSAT00000001069-696916|Name=EMLSAT00000001069|organism=Lepeophtheirus salmonis|type=mRNA|length=2232bp|location=Sequence derived from alignment at LSalAtl2s117:1071016..1073247+ (Lepeophtheirus salmonis)
ATGTTCCATATCAGCATGCGATTCTCATCTATTATCCTTTTATTAACAAC
ACTTCTCTCACCGGCTCTCTCCTTCGGTCCACAGGCTCCTTCCTCTTCTT
CATCAGGATGTGCTCTCATTATCCCAGGGCCTGGAAGATCCTCTGCCTTT
GATCATGGATCTCGCGTCTTTGGCGGATCATCCTTTGATTATCAAGGATC
TAATACTTGCATTACCTATGAGGCAGTCAATGCTGCATTTACCACTGCCT
TAGAAAGAGTAGGACTTCCACCTGTAAGGGGAAAGTTCACTACTGATGAT
GTGGGTAATCTTGGAACTGTGATTCATGAAACGAGTCGTTACCTTGCCAA
ACAGTATGGCCTATCTAAAGATGCTATTTCTAATGGACTACCTCTCATTG
ATACTACTAAGACCATCATTGAAGGCTACTGTCCACCCTTTTTGATGACT
CCAAAGTGCACAGTGGAGCGTTACAGAAGTGTTAACGGAATGTGTAACAA
CGTAGAGCACCCTCATTGGGGAGCGGCTATGAATGGACATCACAGATTCC
TTGCACCTAATTTTGCAGATGGAATCTCTGCTCCAAGGGCCTCCAAAACT
GGAAATCCTCTTCCTTCTGCTCGTATTGTTTCATCTAATATGCACAGAGA
TGAAGGATTCCACGATCATGCTGTGACTATTCTTCTCGTAGCCTGGGGAC
AGTTTATTGATCACGATATCACTCTTAGTGCTGAAACAAAGGATCCTCGT
ACAGGGAAAACACCCAAGTGTTGTGAAGAGGGACAAACTGCTGTTCATCC
CAATTGCTTGCCAATCGAAATCCCATCTCATGATACATTCTTCTCAAAAC
ACAAGCAACGTTGTATGAACTTTGTTCGTTCTCAAGCCGGTCTTCGTTAC
AATTGCAGACTAGGACCCCGTGATACCTTCAATGAAGTATCATCCCTCCT
AGATGCTGGAACCGTGTACTCCAACTCTGATGAGACTCTTGAGAGTTTGA
GACTCTACAAGGACGGACTCCTTAAAATGTTGCCCGTTTTTAATGAATTT
GAAATGAAGGAACTCCTTCCTCTTAAATTGGAATCTCCTGATGAGGGTTG
CATTAGACCTTCAGAAGATGTGTATTGTTTCTTGGCTGGAGATGCTCSTG
TAAACGAACAAACTGTTTTGGCCATGATACACACGCTTTTTGCCCGTGAA
CACAACCGTATTGCCGGGGAATTGAAAAAAGTAAATCCTCATTGGAATGA
CGAAACTATTTTCCAAGAGACTCGTCACATCATTGCAGCCCTTATTTCCC
ACATCAATTACAACGAGTTTCTTCCCATGGTCCTTGGAAAGGAAGTTATG
CAACAACATGACCTCATCCTTCTCAAAAATGGATATTCCAACAGCTATGA
CACATTCACCAACCCTTCTGCTTCCACTGTTTTCGTCTCGGCTGCGTTCA
GATTCGGACATTCCCTCCTCCCATCCACCATCGAAAGATGGAGCAAGACC
CATCGCTATATTGGATCCCAAAGACTCAGCGAGATGTTGCAACAACCCTA
CGATTTATACAAAGCTGGATGGGCTGATAATTACCTTATGGGTCTTGTTA
ACCAAGTGGCTCAAGCCCTCGATGATTCCCTCTCTCAAGAAGTCACTAAC
CACTTGTTCCAAGAGCCAGGAAAGAAATTTGGTCTCGACTTGGCTGCTTT
GAACATTCAAAGAGCTCGTGAGCATGGTGTTCCCGGATACAACGGATGGA
GAGAATGGMGTGGACTCCCCAAGATCCACAGATGGTCAGACCTTCGCGGA
CTCATGTCTAACTCCAGTGTACATGGCTATGCCAGCATTTACGAATCCCC
CGATGACATCGATATCTGGTCCGCAGGGATCACTGAAAAACCTCTACCCG
GCTCTATGATTGGACCTACACTCGCCTGTATCATTGGTAAACAATTCCAC
AATTTAAGACATGGAGATCGTTATTGGTATGAAAACGGAGGATGGCCCTC
AAGCTTCACTCTCGAACAACTGGAAGAGATCCGTAAGATTAAGTTCTCTC
GAATCTTGTGTGATAACAGCGATACAATTGAAAACATGCAAGTCTATGCC
ATGGTCCTTCCAGATCATGAAATCAATCCGCGTGTTCCTTGCAAAAGCGG
AGTTCTTCCTAGAATCGACTTTTCCAAATGGAGAGATGCATCTTATCATC
CTTCTCCATCATCTCCTTATAGTCCGTTTTAA
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