EMLSAT00000002852, EMLSAT00000002852-698699 (mRNA) Lepeophtheirus salmonis

Overview
NameEMLSAT00000002852
Unique NameEMLSAT00000002852-698699
TypemRNA
OrganismLepeophtheirus salmonis (salmon louse)
Associated RNAi Experiments
Table of all RNA interference experiments conducted using this feature, grouped by Phenotype CV: -Missing-
Gallery Image Title Gene or target symbol Sex/Stage Phenotype Datesort descending
LsCHS1 LsCHS1 females
  1. PreAdult2
 None
-Missing- 		09.10.2017 - 09:00
16.11.2017 - 09:00
Table of all RNA interference experiments conducted using this feature, grouped by Phenotype CV: Molting, developmental defect
Gallery Image Title Gene or target symbol Sex/Stage Phenotype Datesort descending
LsCHS1 males
  1. PreAdultI males
In preAdultII: Could not complete molting or had thin exoskeleton (could not swim).
Molting, developmental defect 		20.02.2018 - 09:00
26.02.2018 - 10:11
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
LSalAtl2s1647supercontigLSalAtl2s1647:220..4503 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
ensembl2013-09-26 .965016
Properties
Property NameValue
Logic nameensemblgenomes
Biotypeprotein_coding
EvidenceIEA
Cross References
External references for this mRNA
DatabaseAccession
Ensembl Metazoa (transcript)EMLSAT00000002852 (primary cross-reference)
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
EMLSAG00000002852EMLSAG00000002852-685618Lepeophtheirus salmonisgene


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EMLSAE00000012676EMLSAE00000012676-721604Lepeophtheirus salmonisexon
EMLSAE00000012677EMLSAE00000012677-721605Lepeophtheirus salmonisexon


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
polypeptide-auto768087auto768087Lepeophtheirus salmonispolypeptide
EMLSAP00000002852EMLSAP00000002852Lepeophtheirus salmonispolypeptide


Sequences
The following sequences are available for this feature:

protein sequence of EMLSAP00000002852

>EMLSAP00000002852 ID=EMLSAP00000002852|Name=EMLSAP00000002852|organism=Lepeophtheirus salmonis|type=polypeptide|length=334bp
MSECSRMEKEIREIMETNSWNETYWEIYNTSQQNKQFTTLNAWASDNFCL
NRYDNIHPYDHSRVVLPVQNGQNDYINASLVENERAKRRYILTQGPLCTT
IGHFWSMVWNEKSKAILMLNKLMEKGVKKCEQYWPPHYGDPFICKDVQIQ
VDNIQSESYIDYILTNLRLTNLASNEERIVLHFQFIRWPILGVPRCPDDF
LNFLQAVRETGSLEEDVGPPVVHCSAGIGRSGIFCLVDTSLVLIDKEGPS
SVILKEILLDLRTYRMGLVQTWRELKFSYLAIVSGGKRFNXLPQDFLDDV
IKSTPQPDDPNSSDVFKRPWPYNIYIKKKVAIIA
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mRNA from alignment at LSalAtl2s1647:220..4503+

Legend: polypeptideexon
Hold the cursor over a type above to highlight its positions in the sequence below.
>EMLSAT00000002852-698699 ID=EMLSAT00000002852-698699|Name=EMLSAT00000002852|organism=Lepeophtheirus salmonis|type=mRNA|length=4284bp|location=Sequence derived from alignment at LSalAtl2s1647:220..4503+ (Lepeophtheirus salmonis)
ATGTCTGAGTGCTCAAGGATGGAAAAAGAAATACGTGAGATAATGGAGAC
CAACTCTTGGAACGAGACCTATTGGGAAATTTACAACACGTCTCAACAAA
ACAAACAATTTACAACATTGAATGCCTGGGCCTCGGATAATTTCTGCTTG
AACCGCTATGACAATATACACCCCTACGATCACAGCCGAGTGGTTCTTCC
TGTCCAAAATGGACAAAATGATTATATCAACGCATCATTAGTAGAGAATG
AAAGGGCGAAACGACGGTATATCCTTACTCAAGGACCTTTGTGTACTACA
ATTGGACACTTTTGGTCCATGGTGTGGAATGAAAAGAGCAAAGCGATTCT
TATGCTGAATAAATTGATGGAGAAGGGTGTTAAAAAGTGTGAACAATATT
GGCCGCCACATTACGGAGATCCATTCATTTGTAAAGATGTTCAAATACAA
GTTGATAATATTCAATCTGAGTCATACATCGACTACATCCTCACTAATTT
ACGGCTAACAAATCTTGCTTCCAATGAAGAAAGGATTGTTCTACATTTTC
AATTTATAAGATGGCCAATTTTAGGAGTACCACGCTGTCCGGATGATTTT
CTTAATTTTTTACAGGCAGTTCGAGAAACAGGTAGTTTAGAAGAAGATGT
TGGACCTCCTGTAGTCCATTGCTCTGCTGGTATTGGAAGATCAGGCATCT
TTTGCCTTGTTGATACTTCCTTAGTCTTAATTGACAAGGAAGGACCCTCG
TCCGTTATATTAAAAGAAATTTTGTTAGACCTACGCACATATCGAATGGG
ACTTGTACAGACATGGAGGGAATTAAAATTTAGCTATCTTGCTATTGTGT
CTGGAGGAAAAAGATTTAATAKCCTACCACAGGATTTTCTTGATGATGTG
ATAAAATCAACTCCACAGCCCGATGATCCCAATTCTTCAGATGTTTTTAA
AAGGCCTTGGCCTTACAATATATATATTAAAAAGAGTACAAAGTCTCAGA
AAAAYAACCTGGAWARAAATTCAWCTAGNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGATAG
AAGATAAAGAATGAAGCATTGATGAATAAGTATGGATGAGATAACAAGAT
TTTGCTTTCCGTATTTCAAGGATTTGACAGAATGGATCAATTTCCCTCCA
TAATAATATTGAACAACAAAATATGAACTTGTATTTTTTTTTGGACGTAT
TAATATCCTTTTTTAATGTATAAATCTATTTTTGATTATTTGAGAAAAAG
TTTATTTAAAAACCCTTTTCTTTTTTATCAAAATAAATTTTTTTATTCAA
TTCAATTTATATTAATCATGAAAAAACTATTTAAAACATTTAATTGTCAT
TCTAGCTTTTAAGAAAAGTATATGTTTAGTGTATATCATTGTGAAACATT
ATTCCAATTTTAAATATTTTAAATGTTTGGCCTCGGTATTTAATTTTGAT
GATGAAGAAGCCTGTTTTTATGAATGAATGTATGGTGTGTATCATTGTTT
TCTTTTTTGATTTTTTTTTACCTTGATTTATATATCAAAACTTTTACTTC
TAATTTTTTTCCACTTGATATGGGCCCGTATAAAAATTAAAAAATCTGTA
TGCTCAAGACTCAACTTTCATTTGAAAAAAAAAAATACACTTGGTCCATT
ATATGAGTACACTAGAACAAAAAATGTTCGTATGTCTCCATTATTGTTGA
CAAAAGAAAGATCTTCTCTCCTCCGATGTTCTATCATTTAAACTACCCAA
GGTGTGTTTGTTGGTTACCACTCCGTACTTTAACCAAAATAATGAATAGT
CGTTCATCCTATTAAATCCTTTGATTATACCCCGACTGAGGTTTTAAACC
GAAGCAACTCTATCTCCTTCCTTCTTTGATCTAAAAATTAGTTTCGTTTT
GATTTTCGAACCAATAGGAGCCTATTGTTTTCTATCATAGTCATACAAAT
AATAAAAAAAACTATCCCTAGGGCCAATTTATCTTTTCTTAAAAGCAACC
CTCTTTAAAATGCCTTCTCTTGCAAAATGTTATTTGCGGCAAATCTCTCC
AAAGAACGAAATATTTCTTTTGATTTACGTATCTGATATATATGCTAATC
TACTGTTCTCTAAACTGGTTGCNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNATATTTTGTTTGTTTTTATGTGCCCCTCTAACCCACCCTTGTGGACG
CCCCTGTACATTGCGTATTATTAGAGAAAGGAGAAAGCTGTGTGGGAGAA
GGGMTTGCTCACACTCGAGCATAAACAATGTCGTAAAAAAGTTTCAATTG
ATTGTTTAGCGAAATTTCTTTGTAGTTTTGCGTACAGTTGGGACGGTCCT
CGTTCTCATACACATAATACCTCTTAAAAAATTGATTCATTTTCTTGTCA
AGTTTGAGTTACTCAACCTCTAAAGAGTTAATACAAATTATACTTTGCAA
AAGTTGATTTAAGAGCCTTTTTTAATCAAAACACTTTTAGGCAATTCATA
TTATGTTTATGATGAGATGATCACAAAATAAACTCTTTGAAAAAGTCAAT
CAGTTTTTCGTTAAAAAAAGTATTTTTTTAATAATCTGCCATTTTAAATG
TTGGTTGCTAACATTCGAGTCTCAATGCCCTATATAAGAATTAATTATTA
AGCAATATAAAGAATTAGATACACNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNCGATTTTCGTCATAAAATAGTTGTATAA
TAAATACTTGTTATTGATATGAGTCTCTAAATTTCTTCACATACAATTCC
TTAACTTTAGAAATTAGAGTTTGAATAAATATTTGATTAGCAATTTATCA
TAAGCAAATACAGTTTTACTTTGACTTATATACACCATTTTAAACAATAC
AAGGAACTAATTGAAACAGTAACGGGGAGTAAAAAATTCAGTAATTAAAT
TATGTAATCTTAACACAATACATAGTTAAATGCATGATTTATAGAGTAAT
GAATTATTATGTAGAACTATGTCTAATACAAAAAGATCCAAAGTGGTGTA
ATTAGTTAGTTGTAAGAATTGCTTATGAGTATGATTTGACGTAGATTATA
CCATAATGAATGATTGCTTTTGTTCCAGTAGATATAATATGTATATGAAT
GATTTTTTTTACAGAAGTAGCTATAATTGCATAA
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