EMLSAT00000005382, EMLSAT00000005382-701229 (mRNA) Lepeophtheirus salmonis

Overview
NameEMLSAT00000005382
Unique NameEMLSAT00000005382-701229
TypemRNA
OrganismLepeophtheirus salmonis (salmon louse)
Associated RNAi Experiments
Table of all RNA interference experiments conducted using this feature, grouped by Phenotype CV: no visible phenotype
Gallery Image Title Gene or target symbol Sex/Stage Phenotype Datesort descending Publication
LsHSCARB on free living stages unknown
  1. Nauplius I
  2. Copepodid
 none
no visible phenotype 		26.07.2016 - 09:55
02.08.2016 - 10:00 		A scavenger receptor B (CD36)-like protein is a... more
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
LSalAtl2s28supercontigLSalAtl2s28:642972..644719 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
ensembl2013-09-26 .965016
Properties
Property NameValue
Logic nameensemblgenomes
Biotypeprotein_coding
EvidenceIEA
Cross References
External references for this mRNA
DatabaseAccession
Ensembl Metazoa (transcript)EMLSAT00000005382 (primary cross-reference)
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
EMLSAG00000005382EMLSAG00000005382-688148Lepeophtheirus salmonisgene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
EMLSAP00000005382EMLSAP00000005382Lepeophtheirus salmonispolypeptide
polypeptide-auto779087auto779087Lepeophtheirus salmonispolypeptide


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EMLSAE00000023498EMLSAE00000023498-732426Lepeophtheirus salmonisexon
EMLSAE00000023499EMLSAE00000023499-732427Lepeophtheirus salmonisexon


Sequences
The following sequences are available for this feature:

protein sequence of EMLSAP00000005382

>EMLSAP00000005382 ID=EMLSAP00000005382|Name=EMLSAP00000005382|organism=Lepeophtheirus salmonis|type=polypeptide|length=559bp
MILYSIRVILGLLSIVLIIGGISLKMHILPAMIKSQIYENLDLREGTEGF
NAFKEPPAPVYLSYSLFHIKNTNEVIRGEPPVLLEVGPYSYRETMRKENL
MEQNSRYLSYGKYTKFEFDETNTHKLKCKNRINTPCSKNDKITIINPVLL
TLADKLDGLPKTVKDICFEIINNGNEALGIKAEDLFITEEVDKILYTGFD
SKSAAIFDKLDTFLMLLLEVIQESLELDIPIKAKDFENIIKIISPAQLSE
GTFAFFKGKNATKLQNYYTIENGRFDKESFMNIVEFNGKNKLPEAXWPNV
ATSITGQLSSEGGSCHRIYGTDGTQFPPFLFNKKKFPLWMFVGELCRTIY
VEFESEVEVEGGITAYRYGVGKRVFSMSNPENFCYCQEFFSCAKQTDNDE
WDLSQCLKCKDGVMDVSACYGAPIFMSQPHFLQADKEVQAYVKGLEPNSE
KHATYLDIEPNLGTPLRAHKKIQINMVLRKVAGIDLLKKVADFRLIPMFW
ADEGAELDSEKAEELNNVLFSAITIGNTVGIALGYVVGPILLIVSIILSF
YQRYREKRA
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mRNA from alignment at LSalAtl2s28:642972..644719-

Legend: polypeptideexon
Hold the cursor over a type above to highlight its positions in the sequence below.
>EMLSAT00000005382-701229 ID=EMLSAT00000005382-701229|Name=EMLSAT00000005382|organism=Lepeophtheirus salmonis|type=mRNA|length=1748bp|location=Sequence derived from alignment at LSalAtl2s28:642972..644719- (Lepeophtheirus salmonis)
ATGATTTTATACTCAATCCGAGTCATCCTAGGTCTTCTTTCCATCGTCTT
AATTATTGGCGGAATATCCCTCAAAATGCACATCTTACCAGCAATGATTA
AATCTCAGATATACGAAAATCTCGACTTGCGTGAAGGTACCGAGGGCTTC
AATGCTTTTGTAAGTAGTTTTAAGCCATATTTTCATGTGTATACCTAATT
GTTGTATATTTAATTTCTCAATATTAGAAGGAACCACCTGCTCCTGTCTA
CCTTAGCTATAGTTTATTTCACATTAAGAATACAAATGAGGTGATAAGAG
GAGAGCCACCCGTTCTATTAGAGGTAGGCCCTTATTCGTATAGGGAAACC
ATGAGAAAAGAAAATTTGATGGAGCAAAACTCAAGATATTTGTCTTATGG
AAAGTATACAAAATTTGAGTTTGATGAAACGAACACACATAAACTCAAAT
GTAAAAATAGAATAAATACACCTTGCTCCAAAAACGATAAAATAACCATT
ATAAATCCAGTCCTCCTCACCCTAGCGGATAAACTCGATGGCTTGCCAAA
AACAGTAAAAGATATTTGTTTTGAAATTATAAATAATGGTAATGAAGCTC
TAGGTATTAAGGCCGAAGATTTATTTATTACTGAAGAAGTTGACAAAATC
CTATACACGGGCTTCGACTCTAAGTCTGCTGCTATCTTTGATAAATTGGA
TACATTTCTTATGCTCTTGTTAGAAGTCATACAAGAATCCTTGGAGTTGG
ATATACCAATTAAAGCAAAAGACTTTGAAAACATAATCAAAATCATTAGT
CCTGCACAGCTTTCAGAAGGGACTTTTGCTTTTTTCAAAGGTAAAAATGC
AACCAAATTGCAGAATTACTATACCATTGAAAACGGACGGTTCGATAAAG
AAAGTTTTATGAATATTGTTGAGTTCAATGGTAAGAATAAATTACCTGAG
GCTTKGTGGCCTAATGTAGCCACAAGTATAACGGGKCAACTTTCAAGTGA
GGGTGGCTCATGCCATAGAATCTATGGAACGGATGGGACTCAATTTCCAC
CGTTTTTATTTAACAAGAAAAAATTTCCTTTGTGGATGTTTGTGGGAGAG
CTTTGTAGAACAATATATGTGGAGTTTGAGTCCGAAGTGGAAGTGGAAGG
AGGGATCACAGCCTATCGTTATGGAGTAGGGAAGAGAGTTTTCTCAATGA
GTAACCCTGAAAACTTTTGTTATTGTCAAGAATTTTTCTCATGCGCCAAG
CAAACGGATAATGATGAATGGGATCTATCCCAATGCTTGAAATGTAAGGA
TGGTGTTATGGACGTTTCTGCATGTTATGGAGCTCCAATTTTTATGTCTC
AGCCTCATTTTCTTCAAGCTGATAAAGAAGTTCAAGCCTACGTCAAAGGT
CTAGAACCGAATTCAGAGAAACATGCAACTTATCTTGACATAGAACCCAA
TCTAGGAACACCATTGAGAGCACACAAGAAAATTCAAATCAACATGGTCC
TAAGGAAAGTAGCAGGGATTGATTTACTCAAAAAAGTTGCGGATTTCCGC
TTGATCCCCATGTTCTGGGCTGATGAAGGGGCTGAATTAGATTCGGAAAA
AGCAGAGGAGTTAAACAATGTTCTCTTCAGTGCTATTACAATAGGAAATA
CTGTGGGGATTGCTCTTGGCTATGTCGTTGGCCCAATACTCTTAATTGTT
TCTATAATTCTCTCTTTCTATCAAAGGTATCGAGAAAAACGGGCCTAG
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