EMLSAT00000005383, EMLSAT00000005383-701230 (mRNA) Lepeophtheirus salmonis

Overview
NameEMLSAT00000005383
Unique NameEMLSAT00000005383-701230
TypemRNA
OrganismLepeophtheirus salmonis (salmon louse)
Associated RNAi Experiments
Table of all RNA interference experiments conducted using this feature, grouped by Phenotype CV: no visible phenotype
Gallery Image Title Gene or target symbol Sex/Stage Phenotype Datesort descending
T F168 UN52_5383, LsMvp2/3 female
  1. PreAdult2
  2. Adult
Normal
no visible phenotype
30.10.2014 - 13:33
09.12.2014 (All day)
AP F364 (F168+F169) UN53_5145, UN52_5383, LsMvp1, LsMvp2/3 female
  1. PreAdult2
normal
no visible phenotype
06.03.2018 - 09:00
10.04.2018 - 09:00
AV F364 (F168+F169) UN53_5145, UN52_5383, LsMvp1, LsMvp2/3 female
  1. PreAdult2
normal
no visible phenotype
14.03.2019 - 09:00
24.04.2019 - 09:00
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
LSalAtl2s28supercontigLSalAtl2s28:662764..665404 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
ensembl2013-09-26 .965016
Properties
Property NameValue
Logic nameensemblgenomes
Biotypeprotein_coding
EvidenceIEA
Cross References
External references for this mRNA
DatabaseAccession
Ensembl Metazoa (transcript)EMLSAT00000005383 (primary cross-reference)
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
EMLSAG00000005383EMLSAG00000005383-688149Lepeophtheirus salmonisgene


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EMLSAE00000023500EMLSAE00000023500-732428Lepeophtheirus salmonisexon
EMLSAE00000023501EMLSAE00000023501-732429Lepeophtheirus salmonisexon


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
polypeptide-auto779208auto779208Lepeophtheirus salmonispolypeptide
EMLSAP00000005383EMLSAP00000005383Lepeophtheirus salmonispolypeptide


Sequences
The following sequences are available for this feature:

protein sequence of EMLSAP00000005383

>EMLSAP00000005383 ID=EMLSAP00000005383|Name=EMLSAP00000005383|organism=Lepeophtheirus salmonis|type=polypeptide|length=857bp
MSNPMDGHSFFRIPPFFYMHVVDQTTNVTSVETGPQTYHVKEHDVVLLPP
TRMVVIPPGSYCVVSNPVVTKDGTIEKDRFGQIKLSHGDEEIRLKRDPFP
LYPGEKLKVEVTPLTIVHSSSALLLKVIRNFTDEDKTERXAGDLYLFEGP
GTYFPRKEVEVVKTITATVIHENEALKLSAARETLDRSGCKRVAGEEWLV
RKPGAYLPLAYENILRIVRAHIPQTDVAILVKAYGSFKDTFGVERKNGDQ
YLITLEDTSSFIPDVQEEIMGTVEATTLDSRHYCTILNPYGSDGKPMLGH
RKIIKGEISFFLKPGEILEDGVKEVYILGEDEGIVLKSLVKYEDKSVSPP
VMRKPGDRWMIKGTMEYTPTIEVEVIDVRKAIPLHDNEGIYVRNIQTGSI
RSVIGKTYMLKEDEELWEKDLSPMVQILLNKNRDVTADRGEWINPEKEKR
AAKTGSTPTVVEDVNLTRVITFKVPHNAAVQVYDYKSRQSRVVYGPDLVM
LEPNEEFTQLSLSGGKPKRPNLIRSLALLLGPXFCSDNVTVETADHARLE
LKLSYNWQFKVEKNQDNGAKLFSVPDFIGDMCKSIASKVRGAVSSVSFDN
FHKNSAGIIRSAVFGDETNNSKGVLEFPTNNLIVTSIDIQSVEPVDQRTR
DSLQKSVTLAIEITTQSQEAAAKREAEIIDQEAKGRLERQRITDEAQAEK
SRKQLLELQADCAIVEAIGHSSADAKAQAESNKIEAEAQIENAKRKTEAL
GIEAEAELTRLREARDAEIEYIEKQNKLEIDKKMEIMRLEVEKFKAMVNA
VGPQTLLSMSALPREHQIQMLKSLGLKSTLITDGKTPXNLIDAAKGLIGV
GQETVAX
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mRNA from alignment at LSalAtl2s28:662764..665404-

Legend: polypeptideexon
Hold the cursor over a type above to highlight its positions in the sequence below.
>EMLSAT00000005383-701230 ID=EMLSAT00000005383-701230|Name=EMLSAT00000005383|organism=Lepeophtheirus salmonis|type=mRNA|length=2641bp|location=Sequence derived from alignment at LSalAtl2s28:662764..665404- (Lepeophtheirus salmonis)
ATGTCAAATCCAATGGATGGACATTCATTCTTTCGAATCCCTCCTTTTTT CTACATGCACGTTGTGGATCAAACCACAAATGTTACATCCGTTGAAACTG GGCCACAAACCTACCATGTGAAGGAACACGACGTTGTCCTCCTCCCTCCC ACCCGAATGGTCGTAATACCTCCAGGATCTTATTGTGTTGTATCAAACCC TGTTGTAACAAAAGATGGTACTATTGAGAAAGATCGCTTTGGCCAAATTA AGTTATCTCATGGAGATGAAGAAATTCGATTAAAAAGAGATCCTTTTCCA TTATATCCAGGAGAGAAATTGAAAGTTGAAGTGACGCCTTTAACAATCGT ACATTCATCAAGTGCACTTCTTTTAAAAGTTATCAGAAATTTTACTGATG AAGACAAAACTGAGCGTSTTGCTGGAGATTTATACTTGTTCGAAGGTCCA GGAACTTATTTTCCTAGAAAAGAGGTAAATTCATTCATTCTGTTATTTTA TGTACTTTCAAAATATTAATATTTTTATAAATTTTGTGTAGGTGGAAGTT GTTAAAACTATTACTGCTACAGTCATACATGAGAATGAAGCTTTAAAACT GAGTGCTGCTCGTGAAACTTTAGACAGATCTGGTTGTAAGAGAGTGGCAG GGGAGGAATGGTTGGTTAGAAAACCTGGAGCTTATCTCCCTCTCGCGTAT GAAAATATTCTTAGGATTGTTAGAGCTCATATACCACAAACAGATGTTGC TATTTTAGTCAAGGCCTATGGATCCTTTAAAGATACATTTGGAGTTGAAC GGAAGAACGGAGACCAATATTTAATAACCCTTGAAGATACATCATCCTTC ATACCCGATGTTCAAGAAGAAATTATGGGTACTGTCGAAGCAACTACACT TGATAGTAGACATTATTGTACCATTCTTAACCCCTATGGCTCAGATGGGA AACCCATGCTTGGWCATCGGAAAATTATCAAAGGAGAAATTTCATTTTTT CTTAAGCCAGGAGAAATTCTTGAGGATGGTGTGAAGGAAGTTTACATTCT TGGTGAGGATGAGGGTATTGTCTTAAAGTCCTTGGTTAAGTACGAGGATA AGTCAGTCTCTCCCCCAGTAATGCGAAAACCTGGAGATAGATGGATGATA AAAGGAACTATGGAATATACTCCTACKATTGAGGTAGAAGTAATAGACGT AAGAAAAGCAATACCTCTGCATGACAATGAAGGAATTTACGTTCGAAACA TTCAGACTGGTTCTATAAGATCAGTTATTGGTAAAACTTATATGCTTAAA GAAGATGAAGAACTCTGGGAGAAGGATCTATCACCCATGGTACAAATTTT GTTGAATAAAAATCGGGATGTTACAGCAGATAGAGGTGAATGGATTAATC CTGAAAAAGAAAAAAGAGCTGCTAAAACTGGCTCAACCCCAACAGTAGTT GAAGATGTCAATCTTACTCGAGTAATAACCTTYAAAGTTCCACACAATGC GGCAGTTCAAGTATATGACTATAAGAGCCGTCAATCAAGAGTAGTGTATG GTCCCGATTTAGTTATGCTTGAGCCTAATGAGGAATTTACTCAGTTATCT CTTAGTGGAGGAAAACCAAAACGGCCCAATCTTATCCGTTCACTTGCTTT ACTGTTAGGACCAGWTTTTTGTTCTGATAATGTCACTGTTGAAACTGCCG ATCATGCTAGACTAGAGTTAAAGCTTTCCTACAATTGGCAATTTAAAGTT GAAAAGAATCAAGATAATGGAGCAAAGTTATTTAGCGTCCCTGACTTTAT CGGAGATATGTGCAAATCCATTGCTTCAAAAGTGAGAGGAGCGGTCTCCT CAGTTTCTTTCGATAATTTTCATAAAAATTCTGCAGGGATAATTCGATCG GCCGTATTTGGAGACGAGACAAATAATTCGAAGGGCGTCTTGGAATTCCC CACCAATAACCTTATAGTTACATCCATCGATATCCAAAGTGTTGAACCTG TTGATCAACGAACACGAGATTCACTCCAAAAGTCTGTAACCCTCGCCATA GAAATTACAACTCAATCCCAAGAAGCTGCAGCTAAAAGAGAAGCAGAAAT AATTGACCAAGAAGCCAAAGGTCGATTAGAAAGACAAAGAATCACAGATG AAGCACAGGCAGAAAAATCTCGAAAACAACTTTTGGAATTACAGGCTGAT TGTGCTATTGTTGAGGCCATTGGTCACTCCAGCGCAGATGCTAAAGCTCA AGCTGAATCTAACAAAATTGAAGCTGAGGCTCAAATTGAAAATGCAAAAA GAAAAACTGAAGCTCTAGGTATTGAAGCTGAAGCAGAACTTACTCGCCTT AGAGAAGCTCGTGATGCCGAAATTGAGTATATTGAGAAACAAAACAAACT AGAAATAGATAAAAAAATGGAAATAATGAGGCTTGAAGTGGAAAAGTTTA AGGCAATGGTGAATGCTGTTGGACCTCAAACACTTCTTTCCATGTCGGCT CTTCCAAGAGAACATCAAATCCAGATGTTAAAGTCTTTGGGCTTGAAGTC AACACTCATTACGGACGGTAAAACACCCMTTAATTTGATTGATGCTGCGA AAGGGCTCATTGGAGTCGGKCAAGAAACTGTGGCGGRATGA
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