EMLSAT00000005383, EMLSAT00000005383-701230 (mRNA) Lepeophtheirus salmonis

Overview
NameEMLSAT00000005383
Unique NameEMLSAT00000005383-701230
TypemRNA
OrganismLepeophtheirus salmonis (salmon louse)
Associated RNAi Experiments
Table of all RNA interference experiments conducted using this feature, grouped by Phenotype CV: no visible phenotype
Gallery Image Title Gene or target symbol Sex/Stage Phenotype Datesort descending
T F168 UN52_5383, LsMvp2/3 female
  1. PreAdult2
  2. Adult
 Normal
no visible phenotype 		30.10.2014 - 13:33
09.12.2014 - 00:00
AP F364 (F168+F169) UN53_5145, UN52_5383, LsMvp1, LsMvp2/3 female
  1. PreAdult2
 normal
no visible phenotype 		06.03.2018 - 09:00
10.04.2018 - 09:00
AV F364 (F168+F169) UN53_5145, UN52_5383, LsMvp1, LsMvp2/3 female
  1. PreAdult2
 normal
no visible phenotype 		14.03.2019 - 09:00
24.04.2019 - 09:00
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
LSalAtl2s28supercontigLSalAtl2s28:662764..665404 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
ensembl2013-09-26 .965016
Properties
Property NameValue
Logic nameensemblgenomes
Biotypeprotein_coding
EvidenceIEA
Cross References
External references for this mRNA
DatabaseAccession
Ensembl Metazoa (transcript)EMLSAT00000005383 (primary cross-reference)
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
EMLSAG00000005383EMLSAG00000005383-688149Lepeophtheirus salmonisgene


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EMLSAE00000023500EMLSAE00000023500-732428Lepeophtheirus salmonisexon
EMLSAE00000023501EMLSAE00000023501-732429Lepeophtheirus salmonisexon


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
polypeptide-auto779208auto779208Lepeophtheirus salmonispolypeptide
EMLSAP00000005383EMLSAP00000005383Lepeophtheirus salmonispolypeptide


Sequences
The following sequences are available for this feature:

protein sequence of EMLSAP00000005383

>EMLSAP00000005383 ID=EMLSAP00000005383|Name=EMLSAP00000005383|organism=Lepeophtheirus salmonis|type=polypeptide|length=857bp
MSNPMDGHSFFRIPPFFYMHVVDQTTNVTSVETGPQTYHVKEHDVVLLPP
TRMVVIPPGSYCVVSNPVVTKDGTIEKDRFGQIKLSHGDEEIRLKRDPFP
LYPGEKLKVEVTPLTIVHSSSALLLKVIRNFTDEDKTERXAGDLYLFEGP
GTYFPRKEVEVVKTITATVIHENEALKLSAARETLDRSGCKRVAGEEWLV
RKPGAYLPLAYENILRIVRAHIPQTDVAILVKAYGSFKDTFGVERKNGDQ
YLITLEDTSSFIPDVQEEIMGTVEATTLDSRHYCTILNPYGSDGKPMLGH
RKIIKGEISFFLKPGEILEDGVKEVYILGEDEGIVLKSLVKYEDKSVSPP
VMRKPGDRWMIKGTMEYTPTIEVEVIDVRKAIPLHDNEGIYVRNIQTGSI
RSVIGKTYMLKEDEELWEKDLSPMVQILLNKNRDVTADRGEWINPEKEKR
AAKTGSTPTVVEDVNLTRVITFKVPHNAAVQVYDYKSRQSRVVYGPDLVM
LEPNEEFTQLSLSGGKPKRPNLIRSLALLLGPXFCSDNVTVETADHARLE
LKLSYNWQFKVEKNQDNGAKLFSVPDFIGDMCKSIASKVRGAVSSVSFDN
FHKNSAGIIRSAVFGDETNNSKGVLEFPTNNLIVTSIDIQSVEPVDQRTR
DSLQKSVTLAIEITTQSQEAAAKREAEIIDQEAKGRLERQRITDEAQAEK
SRKQLLELQADCAIVEAIGHSSADAKAQAESNKIEAEAQIENAKRKTEAL
GIEAEAELTRLREARDAEIEYIEKQNKLEIDKKMEIMRLEVEKFKAMVNA
VGPQTLLSMSALPREHQIQMLKSLGLKSTLITDGKTPXNLIDAAKGLIGV
GQETVAX
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mRNA from alignment at LSalAtl2s28:662764..665404-

Legend: polypeptideexon
Hold the cursor over a type above to highlight its positions in the sequence below.
>EMLSAT00000005383-701230 ID=EMLSAT00000005383-701230|Name=EMLSAT00000005383|organism=Lepeophtheirus salmonis|type=mRNA|length=2641bp|location=Sequence derived from alignment at LSalAtl2s28:662764..665404- (Lepeophtheirus salmonis)
ATGTCAAATCCAATGGATGGACATTCATTCTTTCGAATCCCTCCTTTTTT
CTACATGCACGTTGTGGATCAAACCACAAATGTTACATCCGTTGAAACTG
GGCCACAAACCTACCATGTGAAGGAACACGACGTTGTCCTCCTCCCTCCC
ACCCGAATGGTCGTAATACCTCCAGGATCTTATTGTGTTGTATCAAACCC
TGTTGTAACAAAAGATGGTACTATTGAGAAAGATCGCTTTGGCCAAATTA
AGTTATCTCATGGAGATGAAGAAATTCGATTAAAAAGAGATCCTTTTCCA
TTATATCCAGGAGAGAAATTGAAAGTTGAAGTGACGCCTTTAACAATCGT
ACATTCATCAAGTGCACTTCTTTTAAAAGTTATCAGAAATTTTACTGATG
AAGACAAAACTGAGCGTSTTGCTGGAGATTTATACTTGTTCGAAGGTCCA
GGAACTTATTTTCCTAGAAAAGAGGTAAATTCATTCATTCTGTTATTTTA
TGTACTTTCAAAATATTAATATTTTTATAAATTTTGTGTAGGTGGAAGTT
GTTAAAACTATTACTGCTACAGTCATACATGAGAATGAAGCTTTAAAACT
GAGTGCTGCTCGTGAAACTTTAGACAGATCTGGTTGTAAGAGAGTGGCAG
GGGAGGAATGGTTGGTTAGAAAACCTGGAGCTTATCTCCCTCTCGCGTAT
GAAAATATTCTTAGGATTGTTAGAGCTCATATACCACAAACAGATGTTGC
TATTTTAGTCAAGGCCTATGGATCCTTTAAAGATACATTTGGAGTTGAAC
GGAAGAACGGAGACCAATATTTAATAACCCTTGAAGATACATCATCCTTC
ATACCCGATGTTCAAGAAGAAATTATGGGTACTGTCGAAGCAACTACACT
TGATAGTAGACATTATTGTACCATTCTTAACCCCTATGGCTCAGATGGGA
AACCCATGCTTGGWCATCGGAAAATTATCAAAGGAGAAATTTCATTTTTT
CTTAAGCCAGGAGAAATTCTTGAGGATGGTGTGAAGGAAGTTTACATTCT
TGGTGAGGATGAGGGTATTGTCTTAAAGTCCTTGGTTAAGTACGAGGATA
AGTCAGTCTCTCCCCCAGTAATGCGAAAACCTGGAGATAGATGGATGATA
AAAGGAACTATGGAATATACTCCTACKATTGAGGTAGAAGTAATAGACGT
AAGAAAAGCAATACCTCTGCATGACAATGAAGGAATTTACGTTCGAAACA
TTCAGACTGGTTCTATAAGATCAGTTATTGGTAAAACTTATATGCTTAAA
GAAGATGAAGAACTCTGGGAGAAGGATCTATCACCCATGGTACAAATTTT
GTTGAATAAAAATCGGGATGTTACAGCAGATAGAGGTGAATGGATTAATC
CTGAAAAAGAAAAAAGAGCTGCTAAAACTGGCTCAACCCCAACAGTAGTT
GAAGATGTCAATCTTACTCGAGTAATAACCTTYAAAGTTCCACACAATGC
GGCAGTTCAAGTATATGACTATAAGAGCCGTCAATCAAGAGTAGTGTATG
GTCCCGATTTAGTTATGCTTGAGCCTAATGAGGAATTTACTCAGTTATCT
CTTAGTGGAGGAAAACCAAAACGGCCCAATCTTATCCGTTCACTTGCTTT
ACTGTTAGGACCAGWTTTTTGTTCTGATAATGTCACTGTTGAAACTGCCG
ATCATGCTAGACTAGAGTTAAAGCTTTCCTACAATTGGCAATTTAAAGTT
GAAAAGAATCAAGATAATGGAGCAAAGTTATTTAGCGTCCCTGACTTTAT
CGGAGATATGTGCAAATCCATTGCTTCAAAAGTGAGAGGAGCGGTCTCCT
CAGTTTCTTTCGATAATTTTCATAAAAATTCTGCAGGGATAATTCGATCG
GCCGTATTTGGAGACGAGACAAATAATTCGAAGGGCGTCTTGGAATTCCC
CACCAATAACCTTATAGTTACATCCATCGATATCCAAAGTGTTGAACCTG
TTGATCAACGAACACGAGATTCACTCCAAAAGTCTGTAACCCTCGCCATA
GAAATTACAACTCAATCCCAAGAAGCTGCAGCTAAAAGAGAAGCAGAAAT
AATTGACCAAGAAGCCAAAGGTCGATTAGAAAGACAAAGAATCACAGATG
AAGCACAGGCAGAAAAATCTCGAAAACAACTTTTGGAATTACAGGCTGAT
TGTGCTATTGTTGAGGCCATTGGTCACTCCAGCGCAGATGCTAAAGCTCA
AGCTGAATCTAACAAAATTGAAGCTGAGGCTCAAATTGAAAATGCAAAAA
GAAAAACTGAAGCTCTAGGTATTGAAGCTGAAGCAGAACTTACTCGCCTT
AGAGAAGCTCGTGATGCCGAAATTGAGTATATTGAGAAACAAAACAAACT
AGAAATAGATAAAAAAATGGAAATAATGAGGCTTGAAGTGGAAAAGTTTA
AGGCAATGGTGAATGCTGTTGGACCTCAAACACTTCTTTCCATGTCGGCT
CTTCCAAGAGAACATCAAATCCAGATGTTAAAGTCTTTGGGCTTGAAGTC
AACACTCATTACGGACGGTAAAACACCCMTTAATTTGATTGATGCTGCGA
AAGGGCTCATTGGAGTCGGKCAAGAAACTGTGGCGGRATGA
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