Tigriopus kingsejongensis

Overview
Full NameTigriopus kingsejongensis
GenusTigriopus
Specieskingsejongensis
Common NameTigriopus kingsejongensis
Abbreviationtking

Tigriopus kingsejongensis is a free-living intertidal copepod endemic to the Antarctic. The T. kingsejongensis genome has been recently published and provides an interesting example of cold adaptation [1]. The genome annotation was done using the Maker pipeline. The T. kingsejongensis genome and annotation have been imported into LiceBase from public data provided with the original publication and orthologs between the species have been computed by BlastP based on the automatic annotations.

1: Kang S, Ahn DH, Lee JH, Lee SG, Shin SC, Lee J, Min GS, Lee H, Kim HW, Kim S, Park H. The genome of the Antarctic-endemic copepod, Tigriopus kingsejongensis. Gigascience. 2017 Jan 1;6(1):1-9. doi: 10.1093/gigascience/giw010. PubMed PMID: 28369352; PubMed Central PMCID: PMC5467011.

Feature Summary
The following features are currently present for this organism
Feature TypeCount
exon120,172
protein26,056
gene12,774
mRNA12,772
Feature Browser
The following browser provides a quick view for new visitors. Use the searching mechanism to find specific features.
Feature NameUnique NameType
aael007792- partialmaker-scaffold407_size180809-snap-gene-0.27gene
AAEL007897-PAmaker-scaffold134_size322110-snap-gene-0.9gene
aael007952- partialmaker-scaffold17_size721972-snap-gene-6.26gene
AAEL017217-PAmaker-scaffold832_size90819-snap-gene-0.18gene
aarf domain containing kinase 1 isoform x2maker-scaffold248_size238799-snap-gene-1.23gene
abc-2 type transportermaker-scaffold603_size126491-snap-gene-0.27gene
abca2 partialmaker-scaffold927_size80360-snap-gene-0.20gene
abc c2 partialmaker-scaffold2698_size13172-snap-gene-0.4gene
abc family transporter: pleiotropic drugmaker-scaffold206_size259025-snap-gene-1.18gene
abc subfamily abcdmaker-scaffold87_size395581-snap-gene-2.14gene
abc subfamily abcdmaker-scaffold96_size378025-snap-gene-0.23gene
abc subfamily abcgmaker-scaffold411_size179879-snap-gene-0.27gene
abc transportermaker-scaffold1183_size56743-snap-gene-0.1gene
abc transportermaker-scaffold1_size3401120-snap-gene-6.39gene
abc transportermaker-scaffold312_size212576-snap-gene-0.16gene
abc transportermaker-scaffold312_size212576-snap-gene-0.17gene
abc transportermaker-scaffold662_size116868-snap-gene-0.17gene
abc transportersnap_masked-scaffold11167_size2062-processed-gene-0.0gene
abc transportersnap_masked-scaffold2803_size12270-processed-gene-0.3gene
abc transportersnap_masked-scaffold61_size441589-processed-gene-3.13gene
ABC transporter maker-scaffold10_size831480-snap-gene-0.20gene
abc transporter abcc1snap_masked-scaffold613_size124221-processed-gene-0.1gene
abc transporter atp-binding proteinmaker-scaffold1003_size71949-snap-gene-0.8gene
abc transporter atp-binding proteinmaker-scaffold103_size370364-snap-gene-0.20gene
abc transporter atp-binding proteinmaker-scaffold1300_size49728-snap-gene-0.0gene

Pages

Cross References
External references for this organism
DatabaseAccession
PMID28369352
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