Tigriopus kingsejongensis

Overview
Full NameTigriopus kingsejongensis
GenusTigriopus
Specieskingsejongensis
Common NameTigriopus kingsejongensis
Abbreviationtking

Tigriopus kingsejongensis is a free-living intertidal copepod endemic to the Antarctic. The T. kingsejongensis genome has been recently published and provides an interesting example of cold adaptation [1]. The genome annotation was done using the Maker pipeline. The T. kingsejongensis genome and annotation have been imported into LiceBase from public data provided with the original publication and orthologs between the species have been computed by BlastP based on the automatic annotations.

1: Kang S, Ahn DH, Lee JH, Lee SG, Shin SC, Lee J, Min GS, Lee H, Kim HW, Kim S, Park H. The genome of the Antarctic-endemic copepod, Tigriopus kingsejongensis. Gigascience. 2017 Jan 1;6(1):1-9. doi: 10.1093/gigascience/giw010. PubMed PMID: 28369352; PubMed Central PMCID: PMC5467011.

Feature Summary
The following features are currently present for this organism
Feature TypeCount
exon120,172
protein26,056
gene12,774
mRNA12,772
Feature Browser
The following browser provides a quick view for new visitors. Use the searching mechanism to find specific features.
Feature NameUnique NameType
unnamed protein productmaker-scaffold231_size243715-snap-gene-1.49gene
unnamed protein productmaker-scaffold1088_size63410-snap-gene-0.17gene
unnamed protein product partialmaker-scaffold34_size539781-snap-gene-4.23gene
unnamed protein product partialmaker-scaffold15_size728074-snap-gene-6.18gene
unnamed protein product partialmaker-scaffold818_size92908-snap-gene-0.23gene
unnamed protein product partialmaker-scaffold660_size117387-snap-gene-0.30gene
upf0105 protein c14orf124 homologsnap_masked-scaffold1479_size39259-processed-gene-0.4gene
upf0184 protein c9orf16 homologmaker-scaffold2199_size18937-snap-gene-0.3gene
upf0197 transmembrane protein c11orf10 homologmaker-scaffold110_size354795-snap-gene-2.21gene
upf0258 protein kiaa1024-like isoform x2maker-scaffold1253_size52701-snap-gene-0.9gene
upf0326 protein fam152asnap_masked-scaffold408_size180710-processed-gene-0.17gene
upf0363 protein c7orf20maker-scaffold846_size89341-snap-gene-0.11gene
upf0364 protein c6orf211 homologmaker-scaffold1054_size66621-snap-gene-0.10gene
upf0368 protein cxorf26 homologmaker-scaffold886_size84816-snap-gene-0.27gene
upf0378 protein kiaa0100-likemaker-scaffold1825_size27015-snap-gene-0.8gene
upf0414 transmembrane protein c20orf30 homolog isoform 2maker-scaffold804_size94796-snap-gene-0.23gene
upf0428 protein cxorf56 homologmaker-scaffold144_size312663-snap-gene-2.38gene
upf0430 protein cg31712maker-scaffold1056_size66302-snap-gene-0.15gene
upf0462 protein c4orf33 homologmaker-scaffold161_size295871-snap-gene-1.40gene
upf0462 protein c4orf33 homolog isoform x3maker-scaffold161_size295871-snap-gene-1.32gene
upf0462 protein c4orf33-like proteinmaker-scaffold1133_size60293-snap-gene-0.6gene
upf0464 protein c15orf44maker-scaffold227_size249015-snap-gene-0.14gene
upf0468 protein c16orf80 homologmaker-scaffold275_size226830-snap-gene-0.23gene
upf0485 protein c1orf144-like proteinsnap_masked-scaffold1622_size33238-processed-gene-0.5gene
upf0504 proteinmaker-scaffold507_size152468-snap-gene-0.39gene

Pages

Cross References
External references for this organism
DatabaseAccession
PMID28369352
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