Tigriopus kingsejongensis

Overview
Full NameTigriopus kingsejongensis
GenusTigriopus
Specieskingsejongensis
Common NameTigriopus kingsejongensis
Abbreviationtking

Tigriopus kingsejongensis is a free-living intertidal copepod endemic to the Antarctic. The T. kingsejongensis genome has been recently published and provides an interesting example of cold adaptation [1]. The genome annotation was done using the Maker pipeline. The T. kingsejongensis genome and annotation have been imported into LiceBase from public data provided with the original publication and orthologs between the species have been computed by BlastP based on the automatic annotations.

1: Kang S, Ahn DH, Lee JH, Lee SG, Shin SC, Lee J, Min GS, Lee H, Kim HW, Kim S, Park H. The genome of the Antarctic-endemic copepod, Tigriopus kingsejongensis. Gigascience. 2017 Jan 1;6(1):1-9. doi: 10.1093/gigascience/giw010. PubMed PMID: 28369352; PubMed Central PMCID: PMC5467011.

Feature Summary
The following features are currently present for this organism
Feature TypeCount
exon120,172
protein26,056
gene12,774
mRNA12,772
Feature Browser
The following browser provides a quick view for new visitors. Use the searching mechanism to find specific features.
Feature NameUnique NameType
atp-binding cassette sub-family f member 2-likemaker-scaffold2379_size16322-snap-gene-0.5gene
atp-binding cassette sub-family f member 3maker-scaffold426_size175065-snap-gene-0.35gene
atp-binding cassette subfamily member 1maker-scaffold130_size324016-snap-gene-2.20gene
atp-binding domain 1 family member bmaker-scaffold1164_size58058-snap-gene-0.11gene
atp-binding domain-containing protein 3maker-scaffold397_size184017-snap-gene-0.42gene
atp-binding proteinmaker-scaffold996_size72292-snap-gene-0.2gene
atp-binding proteinsnap_masked-scaffold1259_size52279-processed-gene-0.0gene
atp-binding proteinsnap_masked-scaffold2_size2283618-processed-gene-20.3gene
atp-citrate lyasemaker-scaffold289_size220122-snap-gene-0.13gene
atp-citrate synthasemaker-scaffold148_size310697-snap-gene-1.24gene
atp-citrate synthase isoform x1maker-scaffold148_size310697-snap-gene-1.23gene
atp-dependent clp protease atp-binding subunitmaker-scaffold189_size271641-snap-gene-1.21gene
atp-dependent clp protease atp-binding subunit clpx- mitochondrialmaker-scaffold304_size215464-snap-gene-0.12gene
atp-dependent clp protease proteolytic mitochondrialmaker-scaffold334_size202906-snap-gene-1.36gene
atp-dependent clp protease proteolytic subunitsnap_masked-scaffold2_size2283618-processed-gene-12.14gene
atp-dependent clp protease proteolytic subunitsnap_masked-scaffold9249_size2465-processed-gene-0.0gene
atp-dependent dead h dna helicasemaker-scaffold10625_size2164-snap-gene-0.0gene
atp-dependent dna helicasemaker-scaffold1194_size56121-snap-gene-0.1gene
atp-dependent dna helicasemaker-scaffold1_size3401120-snap-gene-26.42gene
atp-dependent dna helicasemaker-scaffold218_size252335-snap-gene-0.1gene
atp-dependent dna helicasemaker-scaffold26_size639921-snap-gene-0.1gene
atp-dependent dna helicasemaker-scaffold2705_size13072-snap-gene-0.10gene
atp-dependent dna helicasemaker-scaffold2804_size12269-snap-gene-0.1gene
atp-dependent dna helicasemaker-scaffold307_size214811-snap-gene-1.2gene
atp-dependent dna helicasemaker-scaffold31_size578364-snap-gene-4.0gene

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Cross References
External references for this organism
DatabaseAccession
PMID28369352
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