Tigriopus kingsejongensis

Overview
Full NameTigriopus kingsejongensis
GenusTigriopus
Specieskingsejongensis
Common NameTigriopus kingsejongensis
Abbreviationtking

Tigriopus kingsejongensis is a free-living intertidal copepod endemic to the Antarctic. The T. kingsejongensis genome has been recently published and provides an interesting example of cold adaptation [1]. The genome annotation was done using the Maker pipeline. The T. kingsejongensis genome and annotation have been imported into LiceBase from public data provided with the original publication and orthologs between the species have been computed by BlastP based on the automatic annotations.

1: Kang S, Ahn DH, Lee JH, Lee SG, Shin SC, Lee J, Min GS, Lee H, Kim HW, Kim S, Park H. The genome of the Antarctic-endemic copepod, Tigriopus kingsejongensis. Gigascience. 2017 Jan 1;6(1):1-9. doi: 10.1093/gigascience/giw010. PubMed PMID: 28369352; PubMed Central PMCID: PMC5467011.

Feature Summary
The following features are currently present for this organism
Feature TypeCount
exon120,172
protein26,056
gene12,774
mRNA12,772
Feature Browser
The following browser provides a quick view for new visitors. Use the searching mechanism to find specific features.
Feature NameUnique NameType
u3 small nucleolar ribonucleoprotein protein imp4maker-scaffold1622_size33238-snap-gene-0.8gene
u3 small nucleolar ribonucleoprotein protein imp4maker-scaffold481_size160081-snap-gene-0.18gene
u3 small nucleolar rna-associated proteinmaker-scaffold37_size504123-snap-gene-0.7gene
u3 small nucleolar rna-associated protein 15 homologmaker-scaffold115_size343722-snap-gene-2.22gene
u3 small nucleolar rna-associated protein 18 homologmaker-scaffold789_size96855-snap-gene-0.21gene
u3 small nucleolar rna-interacting protein 2maker-scaffold245_size240363-snap-gene-1.25gene
u4 small nuclear ribonucleoprotein 27 kda proteinmaker-scaffold308_size214241-snap-gene-1.48gene
u4 tri-snrnp-associated protein 2-likemaker-scaffold1179_size56971-snap-gene-0.16gene
u4 u6 small nuclear ribonucleoproteinsnap_masked-scaffold57_size444674-processed-gene-0.3gene
u4 u6 small nuclear ribonucleoprotein prp3maker-scaffold508_size152036-snap-gene-0.18gene
u4 u6 small nuclear ribonucleoprotein prp31maker-scaffold277_size226016-snap-gene-0.22gene
u5 small nuclear ribonucleoprotein 200 kda helicasesnap_masked-scaffold100_size373717-processed-gene-2.9gene
u6 snrna-associated sm-like protein lsm5maker-scaffold1087_size63509-snap-gene-0.15gene
u6 snrna-associated sm-like protein lsm6snap_masked-scaffold548_size139981-processed-gene-0.4gene
u6 snrna-associated sm-like protein lsm7snap_masked-scaffold2587_size14210-processed-gene-0.0gene
ubiquinol--cytochrome c cytochrome b subunitmaker-scaffold848_size89250-snap-gene-0.1gene
ubiquinone biosynthesis methyltransferasesnap_masked-scaffold6674_size3676-processed-gene-0.2gene
ubiquinone biosynthesis monooxygenase coq6-likesnap_masked-scaffold11_size778918-processed-gene-6.14gene
ubiquinone biosynthesis proteinsnap_masked-scaffold1_size3401120-processed-gene-2.22gene
ubiquinone menaquinone biosynthesis methyltransferasesnap_masked-scaffold729_size105432-processed-gene-0.15gene
ubiquitinsnap_masked-scaffold585_size130225-processed-gene-0.8gene
ubiquitin-activating enzyme e1maker-scaffold431_size173393-snap-gene-0.22gene
ubiquitin-associated domain-containingmaker-scaffold628_size122696-snap-gene-0.37gene
ubiquitin carboxyl-terminal hydrolase 17-like isoform x2maker-scaffold373_size192110-snap-gene-0.35gene
ubiquitin carboxyl-terminal hydrolase 22maker-scaffold816_size93094-snap-gene-0.17gene

Pages

Cross References
External references for this organism
DatabaseAccession
PMID28369352
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