Tigriopus kingsejongensis

Overview
Full NameTigriopus kingsejongensis
GenusTigriopus
Specieskingsejongensis
Common NameTigriopus kingsejongensis
Abbreviationtking

Tigriopus kingsejongensis is a free-living intertidal copepod endemic to the Antarctic. The T. kingsejongensis genome has been recently published and provides an interesting example of cold adaptation [1]. The genome annotation was done using the Maker pipeline. The T. kingsejongensis genome and annotation have been imported into LiceBase from public data provided with the original publication and orthologs between the species have been computed by BlastP based on the automatic annotations.

1: Kang S, Ahn DH, Lee JH, Lee SG, Shin SC, Lee J, Min GS, Lee H, Kim HW, Kim S, Park H. The genome of the Antarctic-endemic copepod, Tigriopus kingsejongensis. Gigascience. 2017 Jan 1;6(1):1-9. doi: 10.1093/gigascience/giw010. PubMed PMID: 28369352; PubMed Central PMCID: PMC5467011.

Feature Summary
The following features are currently present for this organism
Feature TypeCount
exon120,172
protein26,056
gene12,774
mRNA12,772
Feature Browser
The following browser provides a quick view for new visitors. Use the searching mechanism to find specific features.
Feature NameUnique NameType
uncharacterized threonine-rich gpi-anchored glycomaker-scaffold235_size242898-snap-gene-0.9gene
uncharacterized transmembrane protein ddb_g0289901-likesnap_masked-scaffold969_size75217-processed-gene-0.10gene
uncharacterized transposase-like proteinsnap_masked-scaffold1106_size62344-processed-gene-0.0gene
uncharacterized transposase-like proteinmaker-scaffold1409_size42848-snap-gene-0.6gene
unconventional myosin-if-likemaker-scaffold185_size275389-snap-gene-1.26gene
unconventional myosin-xviiia isoform x3maker-scaffold81_size397536-snap-gene-1.14gene
unconventional myosin-xviiia-likemaker-scaffold81_size397536-snap-gene-1.17gene
unhealthy ribosome biogenesis protein 2-like proteinmaker-scaffold156_size297567-snap-gene-0.25gene
universal minicircle sequence binding proteinmaker-scaffold351_size199180-snap-gene-0.28gene
unknownmaker-scaffold101_size371023-snap-gene-0.22gene
unknownsnap_masked-scaffold638_size121162-processed-gene-0.15gene
unknownsnap_masked-scaffold856_size87843-processed-gene-0.8gene
unknownmaker-scaffold540_size141973-snap-gene-0.22gene
unknownmaker-scaffold646_size120253-snap-gene-0.15gene
unknownmaker-scaffold178_size283195-snap-gene-0.12gene
unknownmaker-scaffold343_size201629-snap-gene-1.17gene
unknownmaker-scaffold211_size255937-snap-gene-0.21gene
unknownmaker-scaffold702_size109376-snap-gene-0.19gene
unknownmaker-scaffold1518_size37722-snap-gene-0.14gene
unknownmaker-scaffold1702_size30647-snap-gene-0.12gene
unknownsnap_masked-scaffold1588_size34843-processed-gene-0.5gene
unknownsnap_masked-scaffold452_size166894-processed-gene-0.28gene
unknownmaker-scaffold17_size721972-snap-gene-6.24gene
unknownmaker-scaffold1491_size38540-snap-gene-0.9gene
unknownmaker-scaffold370_size193435-snap-gene-0.43gene

Pages

Cross References
External references for this organism
DatabaseAccession
PMID28369352
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