Tigriopus kingsejongensis

Overview
Full NameTigriopus kingsejongensis
GenusTigriopus
Specieskingsejongensis
Common NameTigriopus kingsejongensis
Abbreviationtking

Tigriopus kingsejongensis is a free-living intertidal copepod endemic to the Antarctic. The T. kingsejongensis genome has been recently published and provides an interesting example of cold adaptation [1]. The genome annotation was done using the Maker pipeline. The T. kingsejongensis genome and annotation have been imported into LiceBase from public data provided with the original publication and orthologs between the species have been computed by BlastP based on the automatic annotations.

1: Kang S, Ahn DH, Lee JH, Lee SG, Shin SC, Lee J, Min GS, Lee H, Kim HW, Kim S, Park H. The genome of the Antarctic-endemic copepod, Tigriopus kingsejongensis. Gigascience. 2017 Jan 1;6(1):1-9. doi: 10.1093/gigascience/giw010. PubMed PMID: 28369352; PubMed Central PMCID: PMC5467011.

Feature Summary
The following features are currently present for this organism
Feature TypeCount
exon120,172
protein26,056
gene12,774
mRNA12,772
Feature Browser
The following browser provides a quick view for new visitors. Use the searching mechanism to find specific features.
Feature NameUnique NameType
upf0513 transmembrane proteinmaker-scaffold372_size192401-snap-gene-0.39gene
upf0518 protein gk23746-like isoform x4maker-scaffold419_size176504-snap-gene-0.35gene
upf0545 protein c22orf39 homologmaker-scaffold68_size422247-snap-gene-0.10gene
upf0549 protein c20orf43 homologmaker-scaffold34_size539781-snap-gene-0.17gene
upf0565 protein c2orf69 homolog isoform x2snap_masked-scaffold527_size145964-processed-gene-0.4gene
upf0692 protein c19orf54 homolog isoform x1maker-scaffold496_size155344-snap-gene-0.24gene
upstream activation factor subunit uaf30maker-scaffold338_size202645-snap-gene-1.16gene
uracil-dna glycosylasemaker-scaffold2448_size15613-snap-gene-0.0gene
uracil-dna glycosylasesnap_masked-scaffold1_size3401120-processed-gene-16.6gene
uracil-dna glycosylasemaker-scaffold502_size153915-snap-gene-0.27gene
uracil-dna glycosylasesnap_masked-scaffold9735_size2342-processed-gene-0.0gene
uracil phosphoribosyltransferasemaker-scaffold383_size189472-snap-gene-0.31gene
uracil phosphoribosyltransferasesnap_masked-scaffold1_size3401120-processed-gene-27.3gene
uracil phosphoribosyltransferase homologmaker-scaffold735_size104922-snap-gene-0.31gene
urad_amica ame: fullmaker-scaffold598_size127767-snap-gene-0.14gene
ureasesnap_masked-scaffold1030_size69197-processed-gene-0.0gene
urea transporter 2snap_masked-scaffold758_size101577-processed-gene-0.8gene
urea transporter 2 isoform x2maker-scaffold132_size323655-snap-gene-1.11gene
ureidoglycolate lyasemaker-scaffold1010_size71100-snap-gene-0.1gene
uridine phosphorylase 1maker-scaffold1694_size30976-snap-gene-0.6gene
urocanate hydratasesnap_masked-scaffold1583_size34874-processed-gene-0.0gene
urocanate hydratasemaker-scaffold640_size121076-snap-gene-0.27gene
uronate isomerasemaker-scaffold301_size216225-snap-gene-0.16gene
uroporphyrin-iii c-methyltransferasemaker-scaffold1185_size56580-snap-gene-0.14gene
uroporphyrinogen decarboxylasemaker-scaffold117_size339417-snap-gene-2.23gene

Pages

Cross References
External references for this organism
DatabaseAccession
PMID28369352
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