Tigriopus kingsejongensis

Overview
Full NameTigriopus kingsejongensis
GenusTigriopus
Specieskingsejongensis
Common NameTigriopus kingsejongensis
Abbreviationtking

Tigriopus kingsejongensis is a free-living intertidal copepod endemic to the Antarctic. The T. kingsejongensis genome has been recently published and provides an interesting example of cold adaptation [1]. The genome annotation was done using the Maker pipeline. The T. kingsejongensis genome and annotation have been imported into LiceBase from public data provided with the original publication and orthologs between the species have been computed by BlastP based on the automatic annotations.

1: Kang S, Ahn DH, Lee JH, Lee SG, Shin SC, Lee J, Min GS, Lee H, Kim HW, Kim S, Park H. The genome of the Antarctic-endemic copepod, Tigriopus kingsejongensis. Gigascience. 2017 Jan 1;6(1):1-9. doi: 10.1093/gigascience/giw010. PubMed PMID: 28369352; PubMed Central PMCID: PMC5467011.

Feature Summary
The following features are currently present for this organism
Feature TypeCount
exon120,172
protein26,056
gene12,774
mRNA12,772
Feature Browser
The following browser provides a quick view for new visitors. Use the searching mechanism to find specific features.
Feature NameUnique NameType
ap-1 complex subunit mu-1maker-scaffold632_size121914-snap-gene-0.20gene
ap-1 complex subunit sigma-1amaker-scaffold754_size102093-snap-gene-0.10gene
ap-1 complex subunit sigma-2maker-scaffold185_size275389-snap-gene-1.35gene
ap-2 complex subunit alphamaker-scaffold241_size241811-snap-gene-0.14gene
ap-2 complex subunit alpha-2-like isoform x7maker-scaffold51_size454968-snap-gene-3.28gene
ap-2 complex subunit betamaker-scaffold135_size322082-snap-gene-2.12gene
ap-2 complex subunit sigma isoform x1maker-scaffold1159_size58420-snap-gene-0.14gene
ap-3 complex subunit beta-2maker-scaffold1553_size35894-snap-gene-0.10gene
ap-3 complex subunit delta-1-like isoform x3snap_masked-scaffold43_size480169-processed-gene-2.9gene
ap-3 complex subunit mu-1maker-scaffold651_size119386-snap-gene-0.29gene
ap-3 complex subunit sigma-2snap_masked-scaffold313_size211302-processed-gene-1.19gene
ap-4 complex subunit epsilon-1maker-scaffold175_size286436-snap-gene-1.50gene
ap endonucleasemaker-scaffold1394_size43558-snap-gene-0.9gene
apolipoprotein l3-likemaker-scaffold143_size313727-snap-gene-1.26gene
apolipoprotein l3-like isoform x1maker-scaffold553_size137994-snap-gene-0.16gene
apolipoprotein l3- partialmaker-scaffold1315_size48675-snap-gene-0.11gene
apolipoprotein o-likemaker-scaffold93_size381549-snap-gene-1.18gene
apolipoprotein partialmaker-scaffold1374_size44603-snap-gene-0.7gene
apoptosis 2 inhibitormaker-scaffold464_size163657-snap-gene-0.31gene
apoptosis-inducing factor 3-like isoform x2maker-scaffold1533_size36968-snap-gene-0.14gene
apoptosis inhibitor 5maker-scaffold706_size108852-snap-gene-0.21gene
apoptosis regulator bcl-2-likemaker-scaffold115_size343722-snap-gene-2.18gene
apoptotic chromatin condensation inducer in the nucleus isoform x5maker-scaffold122_size333723-snap-gene-2.36gene
aprataxin and pnk-like factor-likemaker-scaffold83_size396513-snap-gene-2.27gene
aquaporinmaker-scaffold380_size190731-snap-gene-0.43gene

Pages

Cross References
External references for this organism
DatabaseAccession
PMID28369352
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