EMLSAG00000004823, EMLSAG00000004823-687589 (gene) Lepeophtheirus salmonis

Overview
NameEMLSAG00000004823
Unique NameEMLSAG00000004823-687589
Typegene
OrganismLepeophtheirus salmonis (salmon louse)
Associated RNAi Experiments

Nothing found

Homology
[Close]
BLAST of EMLSAG00000004823 vs. C. finmarchicus
Match: gi|592951992|gb|GAXK01006561.1| (TSA: Calanus finmarchicus comp68346_c0_seq1 transcribed RNA sequence)

HSP 1 Score: 41.2022 bits (95), Expect = 7.397e-5
Identity = 22/77 (28.57%), Postives = 41/77 (53.25%), Query Frame = 0 
Query:    1 MQLKFEVGKKFKETPSEGCTVDTLIAMDGATTFISEKILKLDSQKSTKTICHFKDPKCTQVSEVVGSGVKCTQVFER 77
            M+LKF +G++F E  ++G    T + MDG    +++K ++   +K    +  F +   T   +    GV CTQ+++R
Sbjct:  228 MELKFRLGEEFDEVATDGRKCRTTVTMDGNKLIVNQKAVR-SGEKDVMDVREFTEDGLTM--KWTAGGVTCTQLYKR 449
[Close]
BLAST of EMLSAG00000004823 vs. C. finmarchicus
Match: gi|592839066|gb|GAXK01118478.1| (TSA: Calanus finmarchicus comp124765_c0_seq1 transcribed RNA sequence)

HSP 1 Score: 39.6614 bits (91), Expect = 2.021e-4
Identity = 24/77 (31.17%), Postives = 42/77 (54.55%), Query Frame = 0 
Query:    1 MQLKFEVGKKFKETPSEGCTVDTLIAMDGATTFISEKILKLDSQKSTKTICHFKDPKCTQVSEVVGSGVKCTQVFER 77
            ++LKF++G++F+E  ++G    T + M+G     ++K LK   +K    +  F D   T   ++   GV CTQV+ R
Sbjct:  242 IELKFKLGEEFEEDTTDGRKCKTTVTMEGNKLITNQKALK-SGEKDVMVVRDFTDEGLTM--KMTTGGVTCTQVYAR 463
[Close]
BLAST of EMLSAG00000004823 vs. C. finmarchicus
Match: gi|592951991|gb|GAXK01006562.1| (TSA: Calanus finmarchicus comp68346_c0_seq2 transcribed RNA sequence)

HSP 1 Score: 32.7278 bits (73), Expect = 5.521e-2
Identity = 13/40 (32.50%), Postives = 25/40 (62.50%), Query Frame = 0 
Query:    1 MQLKFEVGKKFKETPSEGCTVDTLIAMDGATTFISEKILK 40
            M+LKF +G++F E  ++G    T + MDG    +++K ++
Sbjct:  228 MELKFRLGEEFDEVATDGRKCRTTVTMDGNKLIVNQKAVR 347
[Close]
BLAST of EMLSAG00000004823 vs. C. finmarchicus
Match: gi|592781364|gb|GAXK01173204.1| (TSA: Calanus finmarchicus comp132107_c0_seq1 transcribed RNA sequence)

HSP 1 Score: 31.5722 bits (70), Expect = 1.404e-1
Identity = 22/77 (28.57%), Postives = 37/77 (48.05%), Query Frame = 0 
Query:    2 QLKFEVGKKFKETPSEGCTVDTLIA-MDGATTFISEKILKLDSQKSTKTICHFKDPKCTQVSEVVGSGVKCTQVFER 77
            ++KF +GK+F+E    G  V   I  M+G    +S K  K + +++      F D   T     V   V+C ++F+R
Sbjct:   96 EIKFIIGKEFEEKAPMGGKVQKAIGTMEGENLVVSSKTEKGEMRRT----FVFTDGGMTMNMHAVAQDVRCKRIFKR 314
[Close]
BLAST of EMLSAG00000004823 vs. C. finmarchicus
Match: gi|592866507|gb|GAXK01091055.1| (TSA: Calanus finmarchicus comp2038368_c0_seq1 transcribed RNA sequence)

HSP 1 Score: 30.4166 bits (67), Expect = 5.690e-1
Identity = 19/46 (41.30%), Postives = 23/46 (50.00%), Query Frame = 0 
Query:    9 KKFKETPSEGCTVDTLIAMDG-ATTFISEKILKLDSQKSTKTICHF 53
            KKF    SEGCT D ++ MD  A     EK   L+S+   K   HF
Sbjct: 1187 KKFNLEYSEGCTADYVLVMDSDANQDDKEKTNGLESKHFEKICGHF 1324
[Close]
BLAST of EMLSAG00000004823 vs. C. finmarchicus
Match: gi|592871903|gb|GAXK01085659.1| (TSA: Calanus finmarchicus comp78465_c1_seq11 transcribed RNA sequence)

HSP 1 Score: 28.8758 bits (63), Expect = 1.718e+0
Identity = 16/45 (35.56%), Postives = 23/45 (51.11%), Query Frame = 0 
Query:   15 PSEGCTVDTLI-AMDGATTFISEKILKLDSQKSTKTICHFKDPKC 58
            PS  C +D      D A TFI   IL L++Q +  ++C    P+C
Sbjct:  394 PS*NCLLDIFY*NNDLALTFIDGNILFLNAQCAVLSLCKTTSPQC 528
[Close]
BLAST of EMLSAG00000004823 vs. C. finmarchicus
Match: gi|592871905|gb|GAXK01085657.1| (TSA: Calanus finmarchicus comp78465_c1_seq9 transcribed RNA sequence)

HSP 1 Score: 28.8758 bits (63), Expect = 1.721e+0
Identity = 16/45 (35.56%), Postives = 23/45 (51.11%), Query Frame = 0 
Query:   15 PSEGCTVDTLI-AMDGATTFISEKILKLDSQKSTKTICHFKDPKC 58
            PS  C +D      D A TFI   IL L++Q +  ++C    P+C
Sbjct:  394 PS*NCLLDIFY*NNDLALTFIDGNILFLNAQCAVLSLCKTTSPQC 528
[Close]
BLAST of EMLSAG00000004823 vs. C. finmarchicus
Match: gi|592871911|gb|GAXK01085651.1| (TSA: Calanus finmarchicus comp78465_c1_seq3 transcribed RNA sequence)

HSP 1 Score: 28.8758 bits (63), Expect = 1.734e+0
Identity = 16/45 (35.56%), Postives = 23/45 (51.11%), Query Frame = 0 
Query:   15 PSEGCTVDTLI-AMDGATTFISEKILKLDSQKSTKTICHFKDPKC 58
            PS  C +D      D A TFI   IL L++Q +  ++C    P+C
Sbjct:  394 PS*NCLLDIFY*NNDLALTFIDGNILFLNAQCAVLSLCKTTSPQC 528
[Close]
BLAST of EMLSAG00000004823 vs. C. finmarchicus
Match: gi|592871913|gb|GAXK01085649.1| (TSA: Calanus finmarchicus comp78465_c1_seq1 transcribed RNA sequence)

HSP 1 Score: 28.8758 bits (63), Expect = 1.736e+0
Identity = 16/45 (35.56%), Postives = 23/45 (51.11%), Query Frame = 0 
Query:   15 PSEGCTVDTLI-AMDGATTFISEKILKLDSQKSTKTICHFKDPKC 58
            PS  C +D      D A TFI   IL L++Q +  ++C    P+C
Sbjct:  394 PS*NCLLDIFY*NNDLALTFIDGNILFLNAQCAVLSLCKTTSPQC 528
[Close]
BLAST of EMLSAG00000004823 vs. C. finmarchicus
Match: gi|592897683|gb|GAXK01060692.1| (TSA: Calanus finmarchicus comp3206703_c0_seq1 transcribed RNA sequence)

HSP 1 Score: 27.7202 bits (60), Expect = 3.425e+0
Identity = 11/29 (37.93%), Postives = 19/29 (65.52%), Query Frame = 0 
Query:   41 LDSQKSTKTICHFKDPKCTQVSEVVGSGV 69
            LD+ KS+ TI  F+D +  ++ E  G+G+
Sbjct:  284 LDTDKSSLTISDFRDERNLELEETFGNGL 370
[Close]
BLAST of EMLSAG00000004823 vs. L. salmonis peptides
Match: EMLSAP00000004823 (pep:novel supercontig:LSalAtl2s:LSalAtl2s254:346296:346535:1 gene:EMLSAG00000004823 transcript:EMLSAT00000004823 description:"augustus_masked-LSalAtl2s254-processed-gene-3.2")

HSP 1 Score: 159.458 bits (402), Expect = 4.088e-52
Identity = 79/79 (100.00%), Postives = 79/79 (100.00%), Query Frame = 0 
Query:    1 MQLKFEVGKKFKETPSEGCTVDTLIAMDGATTFISEKILKLDSQKSTKTICHFKDPKCTQVSEVVGSGVKCTQVFERYK 79
            MQLKFEVGKKFKETPSEGCTVDTLIAMDGATTFISEKILKLDSQKSTKTICHFKDPKCTQVSEVVGSGVKCTQVFERYK
Sbjct:    1 MQLKFEVGKKFKETPSEGCTVDTLIAMDGATTFISEKILKLDSQKSTKTICHFKDPKCTQVSEVVGSGVKCTQVFERYK 79
[Close]
BLAST of EMLSAG00000004823 vs. L. salmonis peptides
Match: EMLSAP00000004641 (pep:novel supercontig:LSalAtl2s:LSalAtl2s2426:5738:7142:1 gene:EMLSAG00000004641 transcript:EMLSAT00000004641 description:"maker-LSalAtl2s2426-augustus-gene-0.3")

HSP 1 Score: 108.227 bits (269), Expect = 2.512e-31
Identity = 52/77 (67.53%), Postives = 65/77 (84.42%), Query Frame = 0 
Query:    1 MQLKFEVGKKFKETPSEGCTVDTLIAMDGATTFISEKILKLDSQKSTKTICHFKDPKCTQVSEVVGSGVKCTQVFER 77
            M+LKFE GKKF+ET S+G TVDTL+ +DG TTF+SE++ K D QKSTKT+  FK+ KCTQ++EVVGS VKCTQVFE+
Sbjct:   60 MELKFEXGKKFEETTSDGRTVDTLVTLDGPTTFVSEQMAKKDGQKSTKTVRDFKEGKCTQITEVVGSDVKCTQVFEK 136
[Close]
BLAST of EMLSAG00000004823 vs. L. salmonis peptides
Match: EMLSAP00000004244 (pep:novel supercontig:LSalAtl2s:LSalAtl2s222:241073:242209:-1 gene:EMLSAG00000004244 transcript:EMLSAT00000004244 description:"snap_masked-LSalAtl2s222-processed-gene-2.5")

HSP 1 Score: 87.8113 bits (216), Expect = 9.007e-24
Identity = 43/66 (65.15%), Postives = 53/66 (80.30%), Query Frame = 0 
Query:    1 MQLKFEVGKKFKETPSEGCTVDTLIAMDGATTFISEKILKLDSQKSTKTICHFKDPKCTQVSEVVG 66
            M+LKF+VGK+F+ET S+G TVDTL+ MDG TTF+ E+  K D QKSTKT+   KD KCTQV+EVVG
Sbjct:   33 MELKFKVGKEFEETXSDGRTVDTLVTMDGPTTFVPEQTAKNDGQKSTKTVRDIKDGKCTQVTEVVG 98
[Close]
BLAST of EMLSAG00000004823 vs. L. salmonis peptides
Match: EMLSAP00000004759 (pep:novel supercontig:LSalAtl2s:LSalAtl2s250:476390:476626:1 gene:EMLSAG00000004759 transcript:EMLSAT00000004759 description:"augustus_masked-LSalAtl2s250-processed-gene-4.0")

HSP 1 Score: 80.8777 bits (198), Expect = 2.198e-21
Identity = 44/75 (58.67%), Postives = 54/75 (72.00%), Query Frame = 0 
Query:    1 MQLKFEVGKKFKETPSEGCTVDTLIAMDGATTFISEKILKLDSQKSTKTICHFKDPKCTQVSEVVGSGVKCTQVF 75
            M+LKF+VGKKF+E  S+G  V+TL  MDG TTF  E+I K D QK+TKT   FKD K  Q+ +VVGS V+ TQVF
Sbjct:    1 MELKFQVGKKFEEATSDGRPVNTLDTMDGPTTFDFEQITKKDGQKNTKTGRDFKDGKYIQIIKVVGSDVQYTQVF 75
[Close]
BLAST of EMLSAG00000004823 vs. L. salmonis peptides
Match: EMLSAP00000008820 (pep:novel supercontig:LSalAtl2s:LSalAtl2s549:632112:633454:-1 gene:EMLSAG00000008820 transcript:EMLSAT00000008820 description:"maker-LSalAtl2s549-snap-gene-6.7")

HSP 1 Score: 68.9366 bits (167), Expect = 1.401e-16
Identity = 36/57 (63.16%), Postives = 44/57 (77.19%), Query Frame = 0 
Query:   20 TVDTLIAMDGATTFISEKILKLDSQKSTKTICHFKDPKCTQVSEVVGSGVKCTQVFE 76
            TV+TL+     TTF+SE+I + D QKSTKT+  FKD KCTQ +EVVGS VKC+QVFE
Sbjct:   43 TVNTLV-----TTFVSEQIAEKDGQKSTKTVRDFKDGKCTQATEVVGSDVKCSQVFE 94
[Close]
BLAST of EMLSAG00000004823 vs. L. salmonis peptides
Match: EMLSAP00000013048 (pep:novel supercontig:LSalAtl2s:LSalAtl2s9:378121:380047:-1 gene:EMLSAG00000013048 transcript:EMLSAT00000013048 description:"snap_masked-LSalAtl2s9-processed-gene-3.0")

HSP 1 Score: 50.0618 bits (118), Expect = 1.464e-9
Identity = 29/74 (39.19%), Postives = 43/74 (58.11%), Query Frame = 0 
Query:    1 MQLKFEVGKKFKETPSEGCTVDTLIAMDGATTFISEKILKLD-SQKSTKTICHFKDPKCTQVSEVVGSGVKCTQ 73
            M+L F+  K+ +E           + MD AT F++E+I K   + K    + +FKD KCT+V+EV+GS  KCTQ
Sbjct:   55 MELSFKSRKEVREKYLRRLYWGHSVTMDRATIFVTEQIAKESWTDKPIPFLTNFKDGKCTKVTEVIGSEFKCTQ 128
[Close]
BLAST of EMLSAG00000004823 vs. L. salmonis peptides
Match: EMLSAP00000001274 (pep:novel supercontig:LSalAtl2s:LSalAtl2s120:334020:334389:1 gene:EMLSAG00000001274 transcript:EMLSAT00000001274 description:"maker-LSalAtl2s120-snap-gene-3.2")

HSP 1 Score: 43.1282 bits (100), Expect = 3.871e-7
Identity = 22/38 (57.89%), Postives = 25/38 (65.79%), Query Frame = 0 
Query:   40 KLDSQKSTKTICHFKDPKCTQVSEVVGSGVKCTQVFER 77
            K D QK+ KT+C FK  KC  V+ VVGS  K TQVFE 
Sbjct:   52 KKDGQKTNKTVCDFKHGKCMLVTLVVGSKYKSTQVFEN 89
[Close]
BLAST of EMLSAG00000004823 vs. nr
Match: gi|225712974|gb|ACO12333.1| (Cellular retinoic acid-binding protein 2 [Lepeophtheirus salmonis])

HSP 1 Score: 110.153 bits (274), Expect = 2.182e-29
Identity = 53/77 (68.83%), Postives = 66/77 (85.71%), Query Frame = 0 
Query:    1 MQLKFEVGKKFKETPSEGCTVDTLIAMDGATTFISEKILKLDSQKSTKTICHFKDPKCTQVSEVVGSGVKCTQVFER 77
            M+LKFEVGKKF+ET S+G TVDTL+ +DG TTF+SE++ K D QKSTKT+  FK+ KCTQ++EVVGS VKCTQVFE+
Sbjct:   56 MELKFEVGKKFEETTSDGRTVDTLVTLDGPTTFVSEQMAKKDGQKSTKTVRDFKEGKCTQITEVVGSDVKCTQVFEK 132
[Close]
BLAST of EMLSAG00000004823 vs. nr
Match: gi|155966175|gb|ABU41042.1| (putative cellular retinoic acid/retinol binding protein [Lepeophtheirus salmonis] >gi|225713860|gb|ACO12776.1| Cellular retinoic acid-binding protein 2 [Lepeophtheirus salmonis] >gi|290463031|gb|ADD24563.1| Cellular retinoic acid-binding protein 2 [Lepeophtheirus salmonis] >gi|290561270|gb|ADD38037.1| Cellular retinoic acid-binding protein 2 [Lepeophtheirus salmonis])

HSP 1 Score: 110.153 bits (274), Expect = 2.217e-29
Identity = 53/77 (68.83%), Postives = 66/77 (85.71%), Query Frame = 0 
Query:    1 MQLKFEVGKKFKETPSEGCTVDTLIAMDGATTFISEKILKLDSQKSTKTICHFKDPKCTQVSEVVGSGVKCTQVFER 77
            M+LKFEVGKKF+ET S+G TVDTL+ +DG TTF+SE++ K D QKSTKT+  FK+ KCTQ++EVVGS VKCTQVFE+
Sbjct:   60 MELKFEVGKKFEETTSDGRTVDTLVTLDGPTTFVSEQMAKKDGQKSTKTVRDFKEGKCTQITEVVGSDVKCTQVFEK 136
[Close]
BLAST of EMLSAG00000004823 vs. nr
Match: gi|225718480|gb|ACO15086.1| (Cellular retinoic acid-binding protein 2 [Caligus clemensi])

HSP 1 Score: 109.383 bits (272), Expect = 4.317e-29
Identity = 54/77 (70.13%), Postives = 64/77 (83.12%), Query Frame = 0 
Query:    1 MQLKFEVGKKFKETPSEGCTVDTLIAMDGATTFISEKILKLDSQKSTKTICHFKDPKCTQVSEVVGSGVKCTQVFER 77
            M+LKFEVGKKF+ET S+G  VDTL+ +DG TTF+SE+I K D QKS KTI  FKD KCTQ++EVVGS VKCTQVFE+
Sbjct:   60 MELKFEVGKKFEETTSDGRVVDTLVTLDGPTTFVSEQIAKKDGQKSAKTIRDFKDGKCTQMTEVVGSDVKCTQVFEK 136
[Close]
BLAST of EMLSAG00000004823 vs. nr
Match: gi|225710890|gb|ACO11291.1| (Cellular retinoic acid-binding protein 2 [Caligus rogercresseyi])

HSP 1 Score: 102.449 bits (254), Expect = 2.887e-26
Identity = 50/77 (64.94%), Postives = 62/77 (80.52%), Query Frame = 0 
Query:    1 MQLKFEVGKKFKETPSEGCTVDTLIAMDGATTFISEKILKLDSQKSTKTICHFKDPKCTQVSEVVGSGVKCTQVFER 77
            M+LKFEVGKKF+ET S+G  VDTL+ ++G T F+SE+  K D  KSTKTI  F+D KCTQ++EVVGS VKCTQVFE+
Sbjct:   60 MELKFEVGKKFEETTSDGRLVDTLVTLEGPTKFVSEQTAKKDGHKSTKTIRDFQDGKCTQITEVVGSDVKCTQVFEK 136
[Close]
BLAST of EMLSAG00000004823 vs. nr
Match: gi|225710698|gb|ACO11195.1| (Cellular retinoic acid-binding protein 2 [Caligus rogercresseyi])

HSP 1 Score: 102.064 bits (253), Expect = 3.256e-26
Identity = 50/77 (64.94%), Postives = 62/77 (80.52%), Query Frame = 0 
Query:    1 MQLKFEVGKKFKETPSEGCTVDTLIAMDGATTFISEKILKLDSQKSTKTICHFKDPKCTQVSEVVGSGVKCTQVFER 77
            M+LKFEVGKKF+ET S+G  VDTL+ ++G T F+SE+  K D  KSTKTI  F+D KCTQ++EVVGS VKCTQVFE+
Sbjct:   60 MELKFEVGKKFEETTSDGRLVDTLVTLEGPTKFVSEQTAKKDGHKSTKTIRDFQDGKCTQITEVVGSDVKCTQVFEK 136
[Close]
BLAST of EMLSAG00000004823 vs. nr
Match: gi|225709644|gb|ACO10668.1| (Cellular retinoic acid-binding protein 2 [Caligus rogercresseyi])

HSP 1 Score: 102.064 bits (253), Expect = 4.185e-26
Identity = 50/77 (64.94%), Postives = 62/77 (80.52%), Query Frame = 0 
Query:    1 MQLKFEVGKKFKETPSEGCTVDTLIAMDGATTFISEKILKLDSQKSTKTICHFKDPKCTQVSEVVGSGVKCTQVFER 77
            M+LKFEVGKKF+ET S+G  VDTL+ ++G T F+SE+  K D  KSTKTI  F+D KCTQ++EVVGS VKCTQVFE+
Sbjct:   60 MKLKFEVGKKFEETTSDGRLVDTLVTLEGPTKFVSEQTAKKDGHKSTKTIRDFQDGKCTQITEVVGSDVKCTQVFEK 136
[Close]
BLAST of EMLSAG00000004823 vs. nr
Match: gi|961375140|gb|ALS04314.1| (cellular retinoic acid-binding protein 2 [Acartia pacifica])

HSP 1 Score: 52.7582 bits (125), Expect = 5.815e-7
Identity = 29/77 (37.66%), Postives = 45/77 (58.44%), Query Frame = 0 
Query:    1 MQLKFEVGKKFKETPSEGCTVDTLIAMDGATTFISEKILKLDSQKSTKTICHFKDPKCTQVSEVVGSGVKCTQVFER 77
            M+LKF+VG++F ET  +G  V  ++ +DG   F+ E+  K + QKSTK+I  F   +C     + G  + C Q F+R
Sbjct:   60 MELKFKVGEEFDETTPDGREVKAIVTLDG-NKFVCEQKAKKEGQKSTKSIREFNGEECIYTMTIDGMDLVCVQKFKR 135
[Close]
BLAST of EMLSAG00000004823 vs. nr
Match: gi|961375138|gb|ALS04313.1| (cellular retinoic acid-binding protein 2 [Acartia pacifica] >gi|961375142|gb|ALS04315.1| cellular retinoic acid-binding protein 2 [Acartia pacifica])

HSP 1 Score: 52.7582 bits (125), Expect = 6.134e-7
Identity = 29/77 (37.66%), Postives = 45/77 (58.44%), Query Frame = 0 
Query:    1 MQLKFEVGKKFKETPSEGCTVDTLIAMDGATTFISEKILKLDSQKSTKTICHFKDPKCTQVSEVVGSGVKCTQVFER 77
            M+LKF+VG++F ET  +G  V  ++ +DG   F+ E+  K + QKSTK+I  F   +C     + G  + C Q F+R
Sbjct:   60 MELKFKVGEEFDETTPDGREVKAIVTLDG-NKFVCEQKAKKEGQKSTKSIREFNGDECIYTMTIDGMDLVCVQKFKR 135
[Close]
BLAST of EMLSAG00000004823 vs. Tigriopus kingsejongenis genes
Match: maker-scaffold747_size103044-snap-gene-0.14 (protein:Tk12097 transcript:maker-scaffold747_size103044-snap-gene-0.14-mRNA-1 annotation:"cellular retinoic acid-binding protein 2")

HSP 1 Score: 62.3882 bits (150), Expect = 1.749e-14
Identity = 32/77 (41.56%), Postives = 50/77 (64.94%), Query Frame = 0 
Query:    1 MQLKFEVGKKFKETPSEGCTVDTLIAMDGATTFISEKILKLDSQKSTKTICHFKDPKCTQVSEVVGSGVKCTQVFER 77
            M+LKF++G++F ET  +G  V  ++  +G  +FIS +  K D QKSTK++  FK  +  Q  EV+G+ + CTQ F+R
Sbjct:   59 MELKFKLGEEFDETTPDGREVKAVVVQEG-NSFISTQTAKKDGQKSTKSVREFKGDEVIQTMEVLGTDIVCTQTFKR 134
[Close]
BLAST of EMLSAG00000004823 vs. Tigriopus kingsejongenis genes
Match: maker-scaffold25_size650667-snap-gene-0.20 (protein:Tk06682 transcript:maker-scaffold25_size650667-snap-gene-0.20-mRNA-1 annotation:"cellular retinoic acid-binding protein 2")

HSP 1 Score: 62.3882 bits (150), Expect = 1.749e-14
Identity = 32/77 (41.56%), Postives = 50/77 (64.94%), Query Frame = 0 
Query:    1 MQLKFEVGKKFKETPSEGCTVDTLIAMDGATTFISEKILKLDSQKSTKTICHFKDPKCTQVSEVVGSGVKCTQVFER 77
            M+LKF++G++F ET  +G  V  ++  +G  +FIS +  K D QKSTK++  FK  +  Q  EV+G+ + CTQ F+R
Sbjct:   59 MELKFKLGEEFDETTPDGREVKAVVVQEG-NSFISTQTAKKDGQKSTKSVREFKGDEVIQTMEVLGTDIVCTQTFKR 134
The following BLAST results are available for this feature:
BLAST of EMLSAG00000004823 vs. GO
Analysis Date: 2014-04-02 (Blast vs. GO)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000004823 vs. C. finmarchicus
Analysis Date: 2014-05-09 (TblastN vs C. finmarchicus TSA)
Total hits: 11
Match NameE-valueIdentityDescription
gi|592951992|gb|GAXK01006561.1|7.397e-528.57TSA: Calanus finmarchicus comp68346_c0_seq1 transc... [more]
gi|592839066|gb|GAXK01118478.1|2.021e-431.17TSA: Calanus finmarchicus comp124765_c0_seq1 trans... [more]
gi|592951991|gb|GAXK01006562.1|5.521e-232.50TSA: Calanus finmarchicus comp68346_c0_seq2 transc... [more]
gi|592781364|gb|GAXK01173204.1|1.404e-128.57TSA: Calanus finmarchicus comp132107_c0_seq1 trans... [more]
gi|592866507|gb|GAXK01091055.1|5.690e-141.30TSA: Calanus finmarchicus comp2038368_c0_seq1 tran... [more]
gi|592871903|gb|GAXK01085659.1|1.718e+035.56TSA: Calanus finmarchicus comp78465_c1_seq11 trans... [more]
gi|592871905|gb|GAXK01085657.1|1.721e+035.56TSA: Calanus finmarchicus comp78465_c1_seq9 transc... [more]
gi|592871911|gb|GAXK01085651.1|1.734e+035.56TSA: Calanus finmarchicus comp78465_c1_seq3 transc... [more]
gi|592871913|gb|GAXK01085649.1|1.736e+035.56TSA: Calanus finmarchicus comp78465_c1_seq1 transc... [more]
gi|592897683|gb|GAXK01060692.1|3.425e+037.93TSA: Calanus finmarchicus comp3206703_c0_seq1 tran... [more]

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BLAST of EMLSAG00000004823 vs. L. salmonis peptides
Analysis Date: 2014-05-10 (Blastp vs. self)
Total hits: 7
Match NameE-valueIdentityDescription
EMLSAP000000048234.088e-52100.00pep:novel supercontig:LSalAtl2s:LSalAtl2s254:34629... [more]
EMLSAP000000046412.512e-3167.53pep:novel supercontig:LSalAtl2s:LSalAtl2s2426:5738... [more]
EMLSAP000000042449.007e-2465.15pep:novel supercontig:LSalAtl2s:LSalAtl2s222:24107... [more]
EMLSAP000000047592.198e-2158.67pep:novel supercontig:LSalAtl2s:LSalAtl2s250:47639... [more]
EMLSAP000000088201.401e-1663.16pep:novel supercontig:LSalAtl2s:LSalAtl2s549:63211... [more]
EMLSAP000000130481.464e-939.19pep:novel supercontig:LSalAtl2s:LSalAtl2s9:378121:... [more]
EMLSAP000000012743.871e-757.89pep:novel supercontig:LSalAtl2s:LSalAtl2s120:33402... [more]
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BLAST of EMLSAG00000004823 vs. SwissProt
Analysis Date: 2017-02-10 (Blastp vs. SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000004823 vs. Select Arthropod Genomes
Analysis Date: 2017-02-20 (Blastp vs. Selected Arthropods)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000004823 vs. nr
Analysis Date: 2017-02-20 (Blastp vs. NR (2/2017))
Total hits: 8
Match NameE-valueIdentityDescription
gi|225712974|gb|ACO12333.1|2.182e-2968.83Cellular retinoic acid-binding protein 2 [Lepeopht... [more]
gi|155966175|gb|ABU41042.1|2.217e-2968.83putative cellular retinoic acid/retinol binding pr... [more]
gi|225718480|gb|ACO15086.1|4.317e-2970.13Cellular retinoic acid-binding protein 2 [Caligus ... [more]
gi|225710890|gb|ACO11291.1|2.887e-2664.94Cellular retinoic acid-binding protein 2 [Caligus ... [more]
gi|225710698|gb|ACO11195.1|3.256e-2664.94Cellular retinoic acid-binding protein 2 [Caligus ... [more]
gi|225709644|gb|ACO10668.1|4.185e-2664.94Cellular retinoic acid-binding protein 2 [Caligus ... [more]
gi|961375140|gb|ALS04314.1|5.815e-737.66cellular retinoic acid-binding protein 2 [Acartia ... [more]
gi|961375138|gb|ALS04313.1|6.134e-737.66cellular retinoic acid-binding protein 2 [Acartia ... [more]
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BLAST of EMLSAG00000004823 vs. Tigriopus kingsejongenis genes
Analysis Date: 2018-04-18 (Blastp vs. Tigriopus kingsejongensis proteins)
Total hits: 2
Match NameE-valueIdentityDescription
maker-scaffold747_size103044-snap-gene-0.141.749e-1441.56protein:Tk12097 transcript:maker-scaffold747_size1... [more]
maker-scaffold25_size650667-snap-gene-0.201.749e-1441.56protein:Tk06682 transcript:maker-scaffold25_size65... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
LSalAtl2s254supercontigLSalAtl2s254:346296..346535 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
ensembl2013-09-26 .965016
Blast vs. GO2014-04-02
TblastN vs C. finmarchicus TSA2014-05-09
Blastp vs. self2014-05-10
Blastp vs. SwissProt2017-02-10
Blastp vs. Selected Arthropods2017-02-20
Blastp vs. NR (2/2017)2017-02-20
Blastp vs. Tigriopus kingsejongensis proteins2018-04-18
Properties
Property NameValue
Logic nameensemblgenomes
Descriptionaugustus_masked-LSalAtl2s254-processed-gene-3.2
Biotypeprotein_coding
EvidenceIEA
NoteCellular retinoic acid-binding protein 2 [Lepeophtheirus salmonis]
Cross References
External references for this gene
DatabaseAccession
Ensembl Metazoa (gene)EMLSAG00000004823 (primary cross-reference)
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
EMLSAT00000004823EMLSAT00000004823-700670Lepeophtheirus salmonismRNA


Sequences
The following sequences are available for this feature:

gene from alignment at LSalAtl2s254:346296..346535+

Legend: mRNA
Hold the cursor over a type above to highlight its positions in the sequence below.
>EMLSAG00000004823-687589 ID=EMLSAG00000004823-687589|Name=EMLSAG00000004823|organism=Lepeophtheirus salmonis|type=gene|length=240bp|location=Sequence derived from alignment at LSalAtl2s254:346296..346535+ (Lepeophtheirus salmonis)
ATGCAGTTGAAGTTCGAAGTCGGAAAGAAGTTCAAGGAAACTCCCTCTGA
AGGTTGTACAGTGGACACTCTCATCGCTATGGACGGAGCAACAACTTTTA
TCTCTGAAAAAATATTGAAATTGGACTCACAAAAGAGTACCAAGACTATT
TGTCACTTCAAGGATCCAAAGTGTACGCAAGTCAGTGAGGTCGTTGGATC
TGGTGTTAAATGCACTCAAGTCTTTGAAAGATATAAGTAA
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