EMLSAG00000008820, EMLSAG00000008820-691586 (gene) Lepeophtheirus salmonis

Overview
NameEMLSAG00000008820
Unique NameEMLSAG00000008820-691586
Typegene
OrganismLepeophtheirus salmonis (salmon louse)
Associated RNAi Experiments

Nothing found

Homology
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BLAST of EMLSAG00000008820 vs. C. finmarchicus
Match: gi|592785878|gb|GAXK01168690.1| (TSA: Calanus finmarchicus comp891_c0_seq1 transcribed RNA sequence)

HSP 1 Score: 46.9802 bits (110), Expect = 4.812e-7
Identity = 41/114 (35.96%), Postives = 56/114 (49.12%), Query Frame = 0 
Query:    4 LGANVLLRNAALVSTPSFEVSKEG-----ESERSLRKLH------------TSNVRTVNTLVT----TFVSEQIAEKDGQKSTKTVRDFKDGKCTQATEVV--GSDVKCSQVFE 94
            L  N LLR AA VSTP  EVS++G     ++  +L+ +             T + R V  +VT      V+ Q A+KDGQKSTK+VR+         T  V    D+KC Q F+
Sbjct:   55 LEVNFLLRKAATVSTPVMEVSEDGGAWTIKTSTTLKTMELKFKLGEEFDETTPDGREVTAVVTCEDGKIVTVQKAKKDGQKSTKSVREMNGADEMVYTMTVDGNDDLKCVQKFK 396
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BLAST of EMLSAG00000008820 vs. C. finmarchicus
Match: gi|592926628|gb|GAXK01031820.1| (TSA: Calanus finmarchicus comp20956_c2_seq1 transcribed RNA sequence)

HSP 1 Score: 45.8246 bits (107), Expect = 2.887e-6
Identity = 36/113 (31.86%), Postives = 56/113 (49.56%), Query Frame = 0 
Query:    4 LGANVLLRNAALVSTPSFEVSKEG-----ESERSLRKLH------------TSNVRTVNTLVTT----FVSEQIAEKDGQKSTKTVRDFK-DGKCTQATEVVGSDVKCSQVFE 94
            L   +LLR AA +STP  E+S+ G     ++  +L+ +             T + R  + +VT      V+ Q A+K GQKST++VR+     K      + GSDV C+Q F+
Sbjct:  109 LDVGMLLRKAATISTPVMEISETGGIWSLKTSTTLKTMELKFKLGEKFDETTPDGRETSAVVTYDEGKIVTVQTAKKAGQKSTRSVRELTGQDKMVYTMMIEGSDVACTQTFK 447
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BLAST of EMLSAG00000008820 vs. C. finmarchicus
Match: gi|592892391|gb|GAXK01065984.1| (TSA: Calanus finmarchicus comp5093_c0_seq1 transcribed RNA sequence)

HSP 1 Score: 45.0542 bits (105), Expect = 3.094e-6
Identity = 36/114 (31.58%), Postives = 58/114 (50.88%), Query Frame = 0 
Query:    4 LGANVLLRNAALVSTPSFEVSKEG-----ESERSLRKLH------------TSNVRTVNTLVT----TFVSEQIAEKDGQKSTKTVRDFKDGKCTQATEVVGS--DVKCSQVFE 94
            L  N+LLR AA VSTP+ E+S+ G     ++  +L+ +             T++ R V+ +VT      ++ Q A+KDGQKSTK++R+         T  +    D+ C Q F+
Sbjct:  102 LDVNMLLRKAATVSTPTVEISEAGGVWTIKTSTTLKSMELKFKLGEEFEETTADGRQVSAVVTFEDGKIITVQKAKKDGQKSTKSIREMNGAAELVYTMTIDGMDDLTCVQKFK 443
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BLAST of EMLSAG00000008820 vs. C. finmarchicus
Match: gi|592856316|gb|GAXK01101228.1| (TSA: Calanus finmarchicus comp6189_c0_seq1 transcribed RNA sequence)

HSP 1 Score: 44.2838 bits (103), Expect = 1.390e-5
Identity = 41/113 (36.28%), Postives = 55/113 (48.67%), Query Frame = 0 
Query:    3 ELGANVLLRNAALVSTPSFEVSKEG-----ESERSLRKLH------------TSNVRTVNTLVT----TFVSEQIAEKDGQKSTKTVRDFKDG-KCTQATEVVGSDVKCSQVF 93
            EL  N LLR AA VSTP  EVS+EG     ++  +L+ +             T + R V   VT      V+ Q A+K+GQKSTK+VR+     +      V GSD+   Q F
Sbjct:  315 ELDVNFLLRKAATVSTPVMEVSEEGGVWNIKTSTTLKTMELKFKLGEAFDETTPDGREVVATVTCEDGKIVTVQKAKKEGQKSTKSVREMNGADEMVYTITVDGSDLVSVQKF 653
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BLAST of EMLSAG00000008820 vs. C. finmarchicus
Match: gi|592882875|gb|GAXK01075500.1| (TSA: Calanus finmarchicus comp6348727_c0_seq1 transcribed RNA sequence)

HSP 1 Score: 41.5874 bits (96), Expect = 2.599e-5
Identity = 30/87 (34.48%), Postives = 47/87 (54.02%), Query Frame = 0 
Query:    4 LGANVLLRNAALVSTPSFEVSKEG-----ESERSLRKLH------------TSNVRTVNTLVT----TFVSEQIAEKDGQKSTKTVR 69
            L  N+LLR AA  STP+ E+++E      ++  +L+ +             T + R V TLVT     F++ Q A+K+G+KSTK+ R
Sbjct:   15 LDVNLLLRKAATASTPTLEITEEDGVWTFKTSTTLKTMEMKFKLKEPFDETTPDGREVTTLVTFENSRFITVQTAKKEGEKSTKSTR 275
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BLAST of EMLSAG00000008820 vs. C. finmarchicus
Match: gi|592839066|gb|GAXK01118478.1| (TSA: Calanus finmarchicus comp124765_c0_seq1 transcribed RNA sequence)

HSP 1 Score: 39.6614 bits (91), Expect = 2.999e-4
Identity = 34/111 (30.63%), Postives = 49/111 (44.14%), Query Frame = 0 
Query:    4 LGANVLLRNAALVSTPSFEVSKEG-----ESERSLRKLH------------TSNVRTVNTLVTT----FVSEQIAEKDGQKSTKTVRDFKDGKCTQATEVVGSDVKCSQVF 93
            L    +LR AAL STP   +++EG      ++ SL+ +             T++ R   T VT      ++ Q A K G+K    VRDF D   T      G  V C+QV+
Sbjct:  131 LNIGFILRKAALASTPVMSITEEGGRWTMTTKTSLKAIELKFKLGEEFEEDTTDGRKCKTTVTMEGNKLITNQKALKSGEKDVMVVRDFTDEGLTMKMTTGG--VTCTQVY 457
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BLAST of EMLSAG00000008820 vs. C. finmarchicus
Match: gi|592785795|gb|GAXK01168773.1| (TSA: Calanus finmarchicus comp1625_c0_seq1 transcribed RNA sequence)

HSP 1 Score: 34.6538 bits (78), Expect = 2.342e-2
Identity = 29/95 (30.53%), Postives = 38/95 (40.00%), Query Frame = 0 
Query:    4 LGANVLLRNAALVSTPSFEVSKEGESERSLRKL-----------------HTSNVRTVNTLVTT----FVSEQIAEKDGQKSTKTVRDFKDGKCT 77
            L    +LR AAL STP   +S+ G     + K                   T++ R   T VT      ++ Q A K G+K    VRDF DG  T
Sbjct:  103 LNVGFILRKAALASTPVMTISEAGGKWTMITKTTVKSIELNFKLGEEFDEDTTDGRKCKTTVTMEGNKLITNQKAVKAGEKDVVAVRDFNDGGLT 387
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BLAST of EMLSAG00000008820 vs. C. finmarchicus
Match: gi|592776796|gb|GAXK01177772.1| (TSA: Calanus finmarchicus comp3722175_c0_seq1 transcribed RNA sequence)

HSP 1 Score: 32.3426 bits (72), Expect = 1.574e-1
Identity = 21/62 (33.87%), Postives = 34/62 (54.84%), Query Frame = 0 
Query:   37 HTSNVRTVNTLVTTFV--------SEQIAEKDGQKSTKTV---RDFKDGKCTQATEVVGSDV 87
            +T+N  ++  + T+FV          +I+E+D ++ T TV   +D  DGK T+ATE    DV
Sbjct:  232 NTTNTGSILRIPTSFVLNGKPFGAHTEISEQDSEQDTPTVISDKDIADGKRTEATESTEDDV 417
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BLAST of EMLSAG00000008820 vs. C. finmarchicus
Match: gi|592766264|gb|GAXK01188304.1| (TSA: Calanus finmarchicus comp11284_c1_seq2 transcribed RNA sequence)

HSP 1 Score: 31.187 bits (69), Expect = 3.569e-1
Identity = 27/89 (30.34%), Postives = 43/89 (48.31%), Query Frame = 0 
Query:    4 LGANVLLRNAALVSTPSFEVSKEG-----ESERSLRKLH------------TSNVRTVNTLVT----TFVSEQIAEKDGQKSTKTVRDF 71
            L  N LLR AA VSTP  E+++       +S  SL+ +             +++ R V ++        V+ Q A+K  QKST++VR+ 
Sbjct:  110 LDVNYLLRKAATVSTPVMEITENNGVWSIKSSTSLKSMELKFKVGVEFDETSADGRDVKSICNFEGGKIVTIQTAKKASQKSTRSVREM 376
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BLAST of EMLSAG00000008820 vs. C. finmarchicus
Match: gi|592766265|gb|GAXK01188303.1| (TSA: Calanus finmarchicus comp11284_c1_seq1 transcribed RNA sequence)

HSP 1 Score: 31.187 bits (69), Expect = 3.717e-1
Identity = 27/89 (30.34%), Postives = 43/89 (48.31%), Query Frame = 0 
Query:    4 LGANVLLRNAALVSTPSFEVSKEG-----ESERSLRKLH------------TSNVRTVNTLVT----TFVSEQIAEKDGQKSTKTVRDF 71
            L  N LLR AA VSTP  E+++       +S  SL+ +             +++ R V ++        V+ Q A+K  QKST++VR+ 
Sbjct:  110 LDVNYLLRKAATVSTPVMEITENNGVWSIKSSTSLKSMELKFKVGVEFDETSADGRDVKSICNFEGGKIVTIQTAKKASQKSTRSVREM 376
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BLAST of EMLSAG00000008820 vs. L. salmonis peptides
Match: EMLSAP00000008820 (pep:novel supercontig:LSalAtl2s:LSalAtl2s549:632112:633454:-1 gene:EMLSAG00000008820 transcript:EMLSAT00000008820 description:"maker-LSalAtl2s549-snap-gene-6.7")

HSP 1 Score: 193.356 bits (490), Expect = 6.517e-65
Identity = 96/96 (100.00%), Postives = 96/96 (100.00%), Query Frame = 0 
Query:    1 MIELGANVLLRNAALVSTPSFEVSKEGESERSLRKLHTSNVRTVNTLVTTFVSEQIAEKDGQKSTKTVRDFKDGKCTQATEVVGSDVKCSQVFEEA 96
            MIELGANVLLRNAALVSTPSFEVSKEGESERSLRKLHTSNVRTVNTLVTTFVSEQIAEKDGQKSTKTVRDFKDGKCTQATEVVGSDVKCSQVFEEA
Sbjct:    1 MIELGANVLLRNAALVSTPSFEVSKEGESERSLRKLHTSNVRTVNTLVTTFVSEQIAEKDGQKSTKTVRDFKDGKCTQATEVVGSDVKCSQVFEEA 96
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BLAST of EMLSAG00000008820 vs. L. salmonis peptides
Match: EMLSAP00000004641 (pep:novel supercontig:LSalAtl2s:LSalAtl2s2426:5738:7142:1 gene:EMLSAG00000004641 transcript:EMLSAT00000004641 description:"maker-LSalAtl2s2426-augustus-gene-0.3")

HSP 1 Score: 130.183 bits (326), Expect = 1.700e-39
Identity = 76/116 (65.52%), Postives = 86/116 (74.14%), Query Frame = 0 
Query:    3 ELGANVLLRNAALVSTPSFEVSKEGES--------ERSL-------RKLH--TSNVRTVNTLVT-----TFVSEQIAEKDGQKSTKTVRDFKDGKCTQATEVVGSDVKCSQVFEEA 96
            ELG NVLLR AALVSTPSFEVSKEGE          +S+       +K    TS+ RTV+TLVT     TFVSEQ+A+KDGQKSTKTVRDFK+GKCTQ TEVVGSDVKC+QVFE+A
Sbjct:   22 ELGVNVLLRKAALVSTPSFEVSKEGEVWSFKTSTVAKSMELKFEXGKKFEETTSDGRTVDTLVTLDGPTTFVSEQMAKKDGQKSTKTVRDFKEGKCTQITEVVGSDVKCTQVFEKA 137
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BLAST of EMLSAG00000008820 vs. L. salmonis peptides
Match: EMLSAP00000004244 (pep:novel supercontig:LSalAtl2s:LSalAtl2s222:241073:242209:-1 gene:EMLSAG00000004244 transcript:EMLSAT00000004244 description:"snap_masked-LSalAtl2s222-processed-gene-2.5")

HSP 1 Score: 82.8037 bits (203), Expect = 1.136e-21
Identity = 55/102 (53.92%), Postives = 60/102 (58.82%), Query Frame = 0 
Query:   10 LRN-AALVSTPSFEVSKEGESERSLRKLHTSNV---------------------RTVNTLVT-----TFVSEQIAEKDGQKSTKTVRDFKDGKCTQATEVVG 84
            +RN  ALVSTPSFEVSKEG+    +    TS V                     RTV+TLVT     TFV EQ A+ DGQKSTKTVRD KDGKCTQ TEVVG
Sbjct:    1 MRNQTALVSTPSFEVSKEGK----VSSFKTSTVAKSMELKFKVGKEFEETXSDGRTVDTLVTMDGPTTFVPEQTAKNDGQKSTKTVRDIKDGKCTQVTEVVG 98
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BLAST of EMLSAG00000008820 vs. L. salmonis peptides
Match: EMLSAP00000004823 (pep:novel supercontig:LSalAtl2s:LSalAtl2s254:346296:346535:1 gene:EMLSAG00000004823 transcript:EMLSAT00000004823 description:"augustus_masked-LSalAtl2s254-processed-gene-3.2")

HSP 1 Score: 68.9366 bits (167), Expect = 1.703e-16
Identity = 36/57 (63.16%), Postives = 44/57 (77.19%), Query Frame = 0 
Query:   43 TVNTLV-----TTFVSEQIAEKDGQKSTKTVRDFKDGKCTQATEVVGSDVKCSQVFE 94
            TV+TL+     TTF+SE+I + D QKSTKT+  FKD KCTQ +EVVGS VKC+QVFE
Sbjct:   20 TVDTLIAMDGATTFISEKILKLDSQKSTKTICHFKDPKCTQVSEVVGSGVKCTQVFE 76
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BLAST of EMLSAG00000008820 vs. L. salmonis peptides
Match: EMLSAP00000004759 (pep:novel supercontig:LSalAtl2s:LSalAtl2s250:476390:476626:1 gene:EMLSAG00000004759 transcript:EMLSAT00000004759 description:"augustus_masked-LSalAtl2s250-processed-gene-4.0")

HSP 1 Score: 68.9366 bits (167), Expect = 1.721e-16
Identity = 39/64 (60.94%), Postives = 46/64 (71.88%), Query Frame = 0 
Query:   38 TSNVRTVNTL-----VTTFVSEQIAEKDGQKSTKTVRDFKDGKCTQATEVVGSDVKCSQVFEEA 96
            TS+ R VNTL      TTF  EQI +KDGQK+TKT RDFKDGK  Q  +VVGSDV+ +QVF +A
Sbjct:   15 TSDGRPVNTLDTMDGPTTFDFEQITKKDGQKNTKTGRDFKDGKYIQIIKVVGSDVQYTQVFVKA 78
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BLAST of EMLSAG00000008820 vs. L. salmonis peptides
Match: EMLSAP00000001274 (pep:novel supercontig:LSalAtl2s:LSalAtl2s120:334020:334389:1 gene:EMLSAG00000001274 transcript:EMLSAT00000001274 description:"maker-LSalAtl2s120-snap-gene-3.2")

HSP 1 Score: 67.781 bits (164), Expect = 6.049e-16
Identity = 46/103 (44.66%), Postives = 52/103 (50.49%), Query Frame = 0 
Query:    3 ELGANVLLRNAALVSTPSFEVSKEGESERSLRKLHTSNVRTVNTLVTTFVSEQIAE-----------KDGQKSTKTVRDFKDGKCTQATEVVGSDVKCSQVFE 94
            ELG N L R   LVS  SFEVSKEGE                   VT+F +  +A+           KDGQK+ KTV DFK GKC   T VVGS  K +QVFE
Sbjct:    5 ELGVNDLFRIPVLVSNHSFEVSKEGE-------------------VTSFKTYTVAKSMELKFEVKNKKDGQKTNKTVCDFKHGKCMLVTLVVGSKYKSTQVFE 88
[Close]
BLAST of EMLSAG00000008820 vs. L. salmonis peptides
Match: EMLSAP00000013048 (pep:novel supercontig:LSalAtl2s:LSalAtl2s9:378121:380047:-1 gene:EMLSAG00000013048 transcript:EMLSAT00000013048 description:"snap_masked-LSalAtl2s9-processed-gene-3.0")

HSP 1 Score: 55.0694 bits (131), Expect = 3.903e-11
Identity = 36/91 (39.56%), Postives = 56/91 (61.54%), Query Frame = 0 
Query:    5 GANVL-LRNAALVSTP--SFEVSKEGESERSLRKLHTSNVRTVNTLVTTFVSEQIAEKDG-QKSTKTVRDFKDGKCTQATEVVGSDVKCSQ 91
            G NV   +N+ +  +   SF+  KE   E+ LR+L+  +  T++   T FV+EQIA++    K    + +FKDGKCT+ TEV+GS+ KC+Q
Sbjct:   40 GGNVYSFKNSRVTKSMELSFKSRKEVR-EKYLRRLYWGHSVTMDR-ATIFVTEQIAKESWTDKPIPFLTNFKDGKCTKVTEVIGSEFKCTQ 128
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BLAST of EMLSAG00000008820 vs. nr
Match: gi|155966175|gb|ABU41042.1| (putative cellular retinoic acid/retinol binding protein [Lepeophtheirus salmonis] >gi|225713860|gb|ACO12776.1| Cellular retinoic acid-binding protein 2 [Lepeophtheirus salmonis] >gi|290463031|gb|ADD24563.1| Cellular retinoic acid-binding protein 2 [Lepeophtheirus salmonis] >gi|290561270|gb|ADD38037.1| Cellular retinoic acid-binding protein 2 [Lepeophtheirus salmonis])

HSP 1 Score: 130.183 bits (326), Expect = 5.697e-37
Identity = 76/116 (65.52%), Postives = 86/116 (74.14%), Query Frame = 0 
Query:    3 ELGANVLLRNAALVSTPSFEVSKEGES--------ERSL-------RKLH--TSNVRTVNTLVT-----TFVSEQIAEKDGQKSTKTVRDFKDGKCTQATEVVGSDVKCSQVFEEA 96
            ELG NVLLR AALVSTPSFEVSKEGE          +S+       +K    TS+ RTV+TLVT     TFVSEQ+A+KDGQKSTKTVRDFK+GKCTQ TEVVGSDVKC+QVFE+A
Sbjct:   22 ELGVNVLLRKAALVSTPSFEVSKEGEVWSFKTSTVAKSMELKFEVGKKFEETTSDGRTVDTLVTLDGPTTFVSEQMAKKDGQKSTKTVRDFKEGKCTQITEVVGSDVKCTQVFEKA 137
[Close]
BLAST of EMLSAG00000008820 vs. nr
Match: gi|225712974|gb|ACO12333.1| (Cellular retinoic acid-binding protein 2 [Lepeophtheirus salmonis])

HSP 1 Score: 129.798 bits (325), Expect = 7.917e-37
Identity = 76/116 (65.52%), Postives = 86/116 (74.14%), Query Frame = 0 
Query:    3 ELGANVLLRNAALVSTPSFEVSKEGES--------ERSL-------RKLH--TSNVRTVNTLVT-----TFVSEQIAEKDGQKSTKTVRDFKDGKCTQATEVVGSDVKCSQVFEEA 96
            ELG NVLLR AALVSTPSFEVSKEGE          +S+       +K    TS+ RTV+TLVT     TFVSEQ+A+KDGQKSTKTVRDFK+GKCTQ TEVVGSDVKC+QVFE+A
Sbjct:   18 ELGVNVLLRKAALVSTPSFEVSKEGEVWSFKTSTVAKSMELKFEVGKKFEETTSDGRTVDTLVTLDGPTTFVSEQMAKKDGQKSTKTVRDFKEGKCTQITEVVGSDVKCTQVFEKA 133
[Close]
BLAST of EMLSAG00000008820 vs. nr
Match: gi|225718480|gb|ACO15086.1| (Cellular retinoic acid-binding protein 2 [Caligus clemensi])

HSP 1 Score: 128.257 bits (321), Expect = 3.699e-36
Identity = 75/116 (64.66%), Postives = 82/116 (70.69%), Query Frame = 0 
Query:    3 ELGANVLLRNAALVSTPSFEVSKEGE------------SERSL---RKLH--TSNVRTVNTLVT-----TFVSEQIAEKDGQKSTKTVRDFKDGKCTQATEVVGSDVKCSQVFEEA 96
            ELG NVLLR AALVSTPSFEVSKEGE             E      +K    TS+ R V+TLVT     TFVSEQIA+KDGQKS KT+RDFKDGKCTQ TEVVGSDVKC+QVFE+A
Sbjct:   22 ELGVNVLLRKAALVSTPSFEVSKEGEVWSFKTSTVAKPMELKFEVGKKFEETTSDGRVVDTLVTLDGPTTFVSEQIAKKDGQKSAKTIRDFKDGKCTQMTEVVGSDVKCTQVFEKA 137
[Close]
BLAST of EMLSAG00000008820 vs. nr
Match: gi|225709644|gb|ACO10668.1| (Cellular retinoic acid-binding protein 2 [Caligus rogercresseyi])

HSP 1 Score: 119.783 bits (299), Expect = 7.615e-33
Identity = 70/115 (60.87%), Postives = 81/115 (70.43%), Query Frame = 0 
Query:    3 ELGANVLLRNAALVSTPSFEVSKEGESE--------RSLR-------KLH--TSNVRTVNTLVT-----TFVSEQIAEKDGQKSTKTVRDFKDGKCTQATEVVGSDVKCSQVFEE 95
            ELG NVLLR AALVSTP+FEVSKEGE          +S++       K    TS+ R V+TLVT      FVSEQ A+KDG KSTKT+RDF+DGKCTQ TEVVGSDVKC+QVFE+
Sbjct:   22 ELGVNVLLRKAALVSTPTFEVSKEGEVWSFKTSTVAKSMKLKFEVGKKFEETTSDGRLVDTLVTLEGPTKFVSEQTAKKDGHKSTKTIRDFQDGKCTQITEVVGSDVKCTQVFEK 136
[Close]
BLAST of EMLSAG00000008820 vs. nr
Match: gi|225710698|gb|ACO11195.1| (Cellular retinoic acid-binding protein 2 [Caligus rogercresseyi])

HSP 1 Score: 119.783 bits (299), Expect = 8.683e-33
Identity = 70/115 (60.87%), Postives = 81/115 (70.43%), Query Frame = 0 
Query:    3 ELGANVLLRNAALVSTPSFEVSKEGE--------SERSL-------RKLH--TSNVRTVNTLVT-----TFVSEQIAEKDGQKSTKTVRDFKDGKCTQATEVVGSDVKCSQVFEE 95
            ELG NVLLR AALVSTP+FEVSKEGE          +S+       +K    TS+ R V+TLVT      FVSEQ A+KDG KSTKT+RDF+DGKCTQ TEVVGSDVKC+QVFE+
Sbjct:   22 ELGVNVLLRKAALVSTPTFEVSKEGEVWSFKTSTMAKSMELKFEVGKKFEETTSDGRLVDTLVTLEGPTKFVSEQTAKKDGHKSTKTIRDFQDGKCTQITEVVGSDVKCTQVFEK 136
[Close]
BLAST of EMLSAG00000008820 vs. nr
Match: gi|225710890|gb|ACO11291.1| (Cellular retinoic acid-binding protein 2 [Caligus rogercresseyi])

HSP 1 Score: 119.398 bits (298), Expect = 1.023e-32
Identity = 70/115 (60.87%), Postives = 81/115 (70.43%), Query Frame = 0 
Query:    3 ELGANVLLRNAALVSTPSFEVSKEGESE--------RSL-------RKLH--TSNVRTVNTLVT-----TFVSEQIAEKDGQKSTKTVRDFKDGKCTQATEVVGSDVKCSQVFEE 95
            ELG NVLLR AALVSTP+FEVSKEGE          +S+       +K    TS+ R V+TLVT      FVSEQ A+KDG KSTKT+RDF+DGKCTQ TEVVGSDVKC+QVFE+
Sbjct:   22 ELGVNVLLRKAALVSTPTFEVSKEGEVWSFKTSTVAKSMELKFEVGKKFEETTSDGRLVDTLVTLEGPTKFVSEQTAKKDGHKSTKTIRDFQDGKCTQITEVVGSDVKCTQVFEK 136
[Close]
BLAST of EMLSAG00000008820 vs. nr
Match: gi|961375138|gb|ALS04313.1| (cellular retinoic acid-binding protein 2 [Acartia pacifica] >gi|961375142|gb|ALS04315.1| cellular retinoic acid-binding protein 2 [Acartia pacifica])

HSP 1 Score: 59.3066 bits (142), Expect = 4.122e-9
Identity = 41/111 (36.94%), Postives = 57/111 (51.35%), Query Frame = 0 
Query:    4 LGANVLLRNAALVSTPSFEVSKEG-----ESERSLRKLH------------TSNVRTVNTLVT----TFVSEQIAEKDGQKSTKTVRDFKDGKCTQATEVVGSDVKCSQVF 93
            L  N LLR AA VSTP  EVS+E      ++  +L+ +             T + R V  +VT     FV EQ A+K+GQKSTK++R+F   +C     + G D+ C Q F
Sbjct:   23 LDVNFLLRKAATVSTPVMEVSEEDGVWTIKTSTTLKTMELKFKVGEEFDETTPDGREVKAIVTLDGNKFVCEQKAKKEGQKSTKSIREFNGDECIYTMTIDGMDLVCVQKF 133
[Close]
BLAST of EMLSAG00000008820 vs. nr
Match: gi|961375136|gb|ALS04312.1| (cellular retinoic acid-binding protein 2 [Acartia pacifica])

HSP 1 Score: 58.9214 bits (141), Expect = 5.506e-9
Identity = 41/111 (36.94%), Postives = 56/111 (50.45%), Query Frame = 0 
Query:    4 LGANVLLRNAALVSTPSFEVSKEG-----ESERSLRKLH------------TSNVRTVNTLVT----TFVSEQIAEKDGQKSTKTVRDFKDGKCTQATEVVGSDVKCSQVF 93
            L  N LLR AA VSTP  EVS+E      ++   L+ +             T + R V  +VT     FV EQ A+K+GQKSTK++R+F   +C     + G D+ C Q F
Sbjct:   23 LDVNFLLRKAATVSTPVMEVSEEDGVWTIKTSTPLKTMEVKFKVGEEFDETTPDGREVKAIVTLDGNKFVCEQKAKKEGQKSTKSIREFNGDECIYTMTIDGMDLVCVQKF 133
[Close]
BLAST of EMLSAG00000008820 vs. nr
Match: gi|961375140|gb|ALS04314.1| (cellular retinoic acid-binding protein 2 [Acartia pacifica])

HSP 1 Score: 58.5362 bits (140), Expect = 6.262e-9
Identity = 41/111 (36.94%), Postives = 57/111 (51.35%), Query Frame = 0 
Query:    4 LGANVLLRNAALVSTPSFEVSKEG-----ESERSLRKLH------------TSNVRTVNTLVT----TFVSEQIAEKDGQKSTKTVRDFKDGKCTQATEVVGSDVKCSQVF 93
            L  N LLR AA VSTP  EVS+E      ++  +L+ +             T + R V  +VT     FV EQ A+K+GQKSTK++R+F   +C     + G D+ C Q F
Sbjct:   23 LDVNFLLRKAATVSTPVMEVSEEDGVWTIKTSTTLKTMELKFKVGEEFDETTPDGREVKAIVTLDGNKFVCEQKAKKEGQKSTKSIREFNGEECIYTMTIDGMDLVCVQKF 133
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BLAST of EMLSAG00000008820 vs. Tigriopus kingsejongenis genes
Match: maker-scaffold747_size103044-snap-gene-0.14 (protein:Tk12097 transcript:maker-scaffold747_size103044-snap-gene-0.14-mRNA-1 annotation:"cellular retinoic acid-binding protein 2")

HSP 1 Score: 65.0846 bits (157), Expect = 3.097e-15
Identity = 42/112 (37.50%), Postives = 63/112 (56.25%), Query Frame = 0 
Query:    4 LGANVLLRNAALVSTPSFEVSKEG-----ESERSLRKLH------------TSNVRTVNTLV----TTFVSEQIAEKDGQKSTKTVRDFKDGKCTQATEVVGSDVKCSQVFE 94
            L  + LLR AA VSTP+ EVS+       ++  +L+ +             T + R V  +V     +F+S Q A+KDGQKSTK+VR+FK  +  Q  EV+G+D+ C+Q F+
Sbjct:   22 LEVSYLLRKAATVSTPTLEVSEADGVWTFKTSTTLKSMELKFKLGEEFDETTPDGREVKAVVVQEGNSFISTQTAKKDGQKSTKSVREFKGDEVIQTMEVLGTDIVCTQTFK 133
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BLAST of EMLSAG00000008820 vs. Tigriopus kingsejongenis genes
Match: maker-scaffold25_size650667-snap-gene-0.20 (protein:Tk06682 transcript:maker-scaffold25_size650667-snap-gene-0.20-mRNA-1 annotation:"cellular retinoic acid-binding protein 2")

HSP 1 Score: 65.0846 bits (157), Expect = 3.097e-15
Identity = 42/112 (37.50%), Postives = 63/112 (56.25%), Query Frame = 0 
Query:    4 LGANVLLRNAALVSTPSFEVSKEG-----ESERSLRKLH------------TSNVRTVNTLV----TTFVSEQIAEKDGQKSTKTVRDFKDGKCTQATEVVGSDVKCSQVFE 94
            L  + LLR AA VSTP+ EVS+       ++  +L+ +             T + R V  +V     +F+S Q A+KDGQKSTK+VR+FK  +  Q  EV+G+D+ C+Q F+
Sbjct:   22 LEVSYLLRKAATVSTPTLEVSEADGVWTFKTSTTLKSMELKFKLGEEFDETTPDGREVKAVVVQEGNSFISTQTAKKDGQKSTKSVREFKGDEVIQTMEVLGTDIVCTQTFK 133
The following BLAST results are available for this feature:
BLAST of EMLSAG00000008820 vs. GO
Analysis Date: 2014-04-02 (Blast vs. GO)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000008820 vs. C. finmarchicus
Analysis Date: 2014-05-09 (TblastN vs C. finmarchicus TSA)
Total hits: 12
Match NameE-valueIdentityDescription
gi|592785878|gb|GAXK01168690.1|4.812e-735.96TSA: Calanus finmarchicus comp891_c0_seq1 transcri... [more]
gi|592926628|gb|GAXK01031820.1|2.887e-631.86TSA: Calanus finmarchicus comp20956_c2_seq1 transc... [more]
gi|592892391|gb|GAXK01065984.1|3.094e-631.58TSA: Calanus finmarchicus comp5093_c0_seq1 transcr... [more]
gi|592856316|gb|GAXK01101228.1|1.390e-536.28TSA: Calanus finmarchicus comp6189_c0_seq1 transcr... [more]
gi|592882875|gb|GAXK01075500.1|2.599e-534.48TSA: Calanus finmarchicus comp6348727_c0_seq1 tran... [more]
gi|592839066|gb|GAXK01118478.1|2.999e-430.63TSA: Calanus finmarchicus comp124765_c0_seq1 trans... [more]
gi|592785795|gb|GAXK01168773.1|2.342e-230.53TSA: Calanus finmarchicus comp1625_c0_seq1 transcr... [more]
gi|592776796|gb|GAXK01177772.1|1.574e-133.87TSA: Calanus finmarchicus comp3722175_c0_seq1 tran... [more]
gi|592766264|gb|GAXK01188304.1|3.569e-130.34TSA: Calanus finmarchicus comp11284_c1_seq2 transc... [more]
gi|592766265|gb|GAXK01188303.1|3.717e-130.34TSA: Calanus finmarchicus comp11284_c1_seq1 transc... [more]

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BLAST of EMLSAG00000008820 vs. L. salmonis peptides
Analysis Date: 2014-05-10 (Blastp vs. self)
Total hits: 7
Match NameE-valueIdentityDescription
EMLSAP000000088206.517e-65100.00pep:novel supercontig:LSalAtl2s:LSalAtl2s549:63211... [more]
EMLSAP000000046411.700e-3965.52pep:novel supercontig:LSalAtl2s:LSalAtl2s2426:5738... [more]
EMLSAP000000042441.136e-2153.92pep:novel supercontig:LSalAtl2s:LSalAtl2s222:24107... [more]
EMLSAP000000048231.703e-1663.16pep:novel supercontig:LSalAtl2s:LSalAtl2s254:34629... [more]
EMLSAP000000047591.721e-1660.94pep:novel supercontig:LSalAtl2s:LSalAtl2s250:47639... [more]
EMLSAP000000012746.049e-1644.66pep:novel supercontig:LSalAtl2s:LSalAtl2s120:33402... [more]
EMLSAP000000130483.903e-1139.56pep:novel supercontig:LSalAtl2s:LSalAtl2s9:378121:... [more]
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BLAST of EMLSAG00000008820 vs. SwissProt
Analysis Date: 2017-02-10 (Blastp vs. SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000008820 vs. Select Arthropod Genomes
Analysis Date: 2017-02-20 (Blastp vs. Selected Arthropods)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000008820 vs. nr
Analysis Date: 2017-02-20 (Blastp vs. NR (2/2017))
Total hits: 9
Match NameE-valueIdentityDescription
gi|155966175|gb|ABU41042.1|5.697e-3765.52putative cellular retinoic acid/retinol binding pr... [more]
gi|225712974|gb|ACO12333.1|7.917e-3765.52Cellular retinoic acid-binding protein 2 [Lepeopht... [more]
gi|225718480|gb|ACO15086.1|3.699e-3664.66Cellular retinoic acid-binding protein 2 [Caligus ... [more]
gi|225709644|gb|ACO10668.1|7.615e-3360.87Cellular retinoic acid-binding protein 2 [Caligus ... [more]
gi|225710698|gb|ACO11195.1|8.683e-3360.87Cellular retinoic acid-binding protein 2 [Caligus ... [more]
gi|225710890|gb|ACO11291.1|1.023e-3260.87Cellular retinoic acid-binding protein 2 [Caligus ... [more]
gi|961375138|gb|ALS04313.1|4.122e-936.94cellular retinoic acid-binding protein 2 [Acartia ... [more]
gi|961375136|gb|ALS04312.1|5.506e-936.94cellular retinoic acid-binding protein 2 [Acartia ... [more]
gi|961375140|gb|ALS04314.1|6.262e-936.94cellular retinoic acid-binding protein 2 [Acartia ... [more]
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BLAST of EMLSAG00000008820 vs. Tigriopus kingsejongenis genes
Analysis Date: 2018-04-18 (Blastp vs. Tigriopus kingsejongensis proteins)
Total hits: 2
Match NameE-valueIdentityDescription
maker-scaffold747_size103044-snap-gene-0.143.097e-1537.50protein:Tk12097 transcript:maker-scaffold747_size1... [more]
maker-scaffold25_size650667-snap-gene-0.203.097e-1537.50protein:Tk06682 transcript:maker-scaffold25_size65... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
LSalAtl2s549supercontigLSalAtl2s549:632112..633454 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
ensembl2013-09-26 .965016
Blast vs. GO2014-04-02
TblastN vs C. finmarchicus TSA2014-05-09
Blastp vs. self2014-05-10
Blastp vs. SwissProt2017-02-10
Blastp vs. Selected Arthropods2017-02-20
Blastp vs. NR (2/2017)2017-02-20
Blastp vs. Tigriopus kingsejongensis proteins2018-04-18
Properties
Property NameValue
Logic nameensemblgenomes
Descriptionmaker-LSalAtl2s549-snap-gene-6.7
Biotypeprotein_coding
EvidenceIEA
Noteputative cellular retinoic acid/retinol binding protein [Lepeophtheirus salmonis]
Cross References
External references for this gene
DatabaseAccession
Ensembl Metazoa (gene)EMLSAG00000008820 (primary cross-reference)
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
EMLSAT00000008820EMLSAT00000008820-704667Lepeophtheirus salmonismRNA


Sequences
The following sequences are available for this feature:

gene from alignment at LSalAtl2s549:632112..633454-

Legend: mRNA
Hold the cursor over a type above to highlight its positions in the sequence below.
>EMLSAG00000008820-691586 ID=EMLSAG00000008820-691586|Name=EMLSAG00000008820|organism=Lepeophtheirus salmonis|type=gene|length=1343bp|location=Sequence derived from alignment at LSalAtl2s549:632112..633454- (Lepeophtheirus salmonis)
ATGATCGTACTCGAACTATCTCTTCAAAACCTTTTTCAAATAAATGAAAG
AAAATTTCCATAAAACTGCTCAAAATTCTATGTACTTATTTAAGGGTATT
TTTGTTCATTTTGAAATGTTTTAAATTAAATTTACATTAGACTGAACAAC
AATGTTTTTTTCTGAAGATATGATTTATTTTTATATCCAGCCAGAAGTTC
TCAAAGACTTTTTTATAATATCATAAAAAGTCCGTTTTATGTGTATTATG
TCGATTTTTCGTTTAAATTAAAATAAAAGTTAAGAAATACACAATTTAAA
TTTTTATTAAAATTATCACAAGAAAAAATTATTTGTTTTTAAGTTATTTT
TAAGTTTTTGTTAGAATCAATATTAGTATCCCCATTCCAAAGCCCTTAAA
CCGTCAGAGATTGAGTCACTTGTTCTTTTTTAAATATATATATATCAAAC
GTTAATGTATCGTAATCAATATACTAGCTCATAAATTTGTACCCTAAACA
ATTGGAACGGAAAATTACTTATAATTTGGTAAATATTTTTTTGCAAATTA
AGCCATGAAAATCAACAATTTTCACTTTGAGACTCTATAATTTATAAAAA
ATTAAAAATATATGCATTTTTAATTATAAACCCTCTGTTAGTAAATTGGG
ATAATATGGACCCTAAAATTGCTTTGATTCCCTCTATCTGCCTTTGGTCC
TATCTCTTGGAGAACATAAAAGTCATCTTCTTCTGTCTTAGTGAATGAAG
AATTATCGAAAAAAGTTAAATATAAATTTCAAATTGTTACATATTTTGGT
ATTATGGATATAATTTCATATTTTTGTAGTACCTAATTAACATATCTTTA
TTTTCATATTTCACATTCAGACCATTTATATGAATCTGAAAGTAAATCGA
TCCTGTCATACTTCCAAAACCTTGAATAAATTCATTATTCAAACACAAAT
CTATTTTCACAATGAAAGCTTTCATGGGGCAAATACAACCGAATTTCCTC
CAAAAAATCATCTTGAAGGAGCTTGGTGCTAATGTTTTACTTCGTAACGC
CGCCCTTGTGTCGACACCTAGCTTTGAGGTCTCTAAGGAGGGGGAAGTGT
GGTCTTTCAAAACTTCTACGGAATTGAAATTCGAAGTCGGAAAGAAGTTT
GAGGAAACTACATACTTCTAATGTTCGTACAGTGAACACCCTCGTCACGA
CTTTTGTCTCTGAGCAAATCGCCGAAAAGGACGGACAAAAGAGTACCAAG
ACTGTGCGTGACTTCAAGGATGGAAAATGTACGCAAGCCACTGAGGTCGT
TGGATCTGATGTTAAATGCAGTCAAGTCTTTGAAGAAGCATAA
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