EMLSAG00000006935, EMLSAG00000006935-689701 (gene) Lepeophtheirus salmonis
Overview
Associated RNAi Experiments
Nothing found Homology
BLAST of EMLSAG00000006935 vs. C. finmarchicus
Match: gi|592835351|gb|GAXK01122193.1| (TSA: Calanus finmarchicus comp106377_c0_seq1 transcribed RNA sequence) HSP 1 Score: 77.0258 bits (188), Expect = 2.881e-16 Identity = 48/182 (26.37%), Postives = 95/182 (52.20%), Query Frame = 0 Query: 1 MELSFVAVYLYIFILSLEFSV-LQVSSTYHLPTPPSSFSI----DTALRSLSKAVFTHAI-LPNDSQIE----EELRESSVQDTSECIKKLICIIHSIPSPERTWDERIIAEAISPKLVFKSQHIQLQLAARLGYAQPSQCYDVYSRCPFEKHQLMTLIRQRGMSLNXPTSPDYDCTVIFLW 172 ME+ ++ + + F++ L FSV L V+ + FS + ALR L++ F ++ + N +++ E L +++ DT +C KKL+C + E WDE ++ + + + S + +A ++G +C+DVY RC + +++ ++R++G+S + P + DC + FLW Sbjct: 140 MEVVWLRI-MSCFLVPLLFSVGLCVAGKHGRAGHSLGFSSFPAPNAALRELARGAFLNSWPVTNKPELQNLKTESLNDANYHDTDDCAKKLLCELTKKEGLE--WDEELLIKYYDQPVNYGSDSLFFNIAVKVGKDGERECFDVYPRCILDLSEMLEILRRQGISFDIP-GEERDCQIYFLW 673
BLAST of EMLSAG00000006935 vs. C. finmarchicus
Match: gi|592844673|gb|GAXK01112871.1| (TSA: Calanus finmarchicus comp1771135_c0_seq1 transcribed RNA sequence) HSP 1 Score: 64.6994 bits (156), Expect = 1.235e-11 Identity = 31/111 (27.93%), Postives = 61/111 (54.95%), Query Frame = 0 Query: 66 LRESSVQDTSECIKKLICIIHSIPSPERTWDERIIAEAISPKLVFKSQHIQLQLAARLGYAQPSQCYDVYSRCPFEKHQLMTLIRQRGMSLNXPTSPDYDCTVIFLWKRKE 176 L++++ QDT +C KKL+C + +RTWDE ++ + + S + +A ++G C D Y C + +++ LIR++G+S P + + +C V +W++K+ Sbjct: 782 LKQANFQDTDDCAKKLLCELSR--KKDRTWDEDLVYTYYDQPVDYMSDSLFFNIAVQVGKDGERDCQDAYPSCFLKLPEMLKLIRRQGISFELP-ADELECQVYVVWRKKD 1105
BLAST of EMLSAG00000006935 vs. C. finmarchicus
Match: gi|592854055|gb|GAXK01103489.1| (TSA: Calanus finmarchicus comp61937_c0_seq1 transcribed RNA sequence) HSP 1 Score: 40.0466 bits (92), Expect = 2.503e-3 Identity = 25/85 (29.41%), Postives = 41/85 (48.24%), Query Frame = 0 Query: 70 SVQDTSECIKKLICIIHSIPSPERTWDERII------AEAISPKLVFKSQHIQLQLAARLGYAQPSQ--CYDVYSRCPFEKHQLM 146 S D C K+L+C + + ERT ++ ++ ++++P S + LAA LG A SQ C YS CP+ ++M Sbjct: 370 SSMDLYSCGKQLVCELEAKADSERTPEDMLMISLFGKGKSVNP----ASAKAEYDLAAELGMASKSQIVCRKRYSTCPYTADEMM 612
BLAST of EMLSAG00000006935 vs. C. finmarchicus
Match: gi|592769618|gb|GAXK01184950.1| (TSA: Calanus finmarchicus comp6434584_c0_seq1 transcribed RNA sequence) HSP 1 Score: 32.7278 bits (73), Expect = 2.080e-1 Identity = 18/52 (34.62%), Postives = 28/52 (53.85%), Query Frame = 0 Query: 87 SIPSPERTWDERIIAEAISPKLVFKSQHIQLQLAARLGYAQPSQCYDVYSRC 138 + P+ E R++ + I+P+L SQ QL+ ARLGY + +YS C Sbjct: 120 TTPAAEDHVPGRVLNDHITPRLALHSQRPQLEAQARLGYPH----WLLYSDC 263
BLAST of EMLSAG00000006935 vs. C. finmarchicus
Match: gi|592833102|gb|GAXK01124442.1| (TSA: Calanus finmarchicus comp24536_c0_seq1 transcribed RNA sequence) HSP 1 Score: 33.8834 bits (76), Expect = 2.813e-1 Identity = 26/86 (30.23%), Postives = 40/86 (46.51%), Query Frame = 0 Query: 73 DTSECIKKLICIIHSIPSPERTWDERIIA------EAISPKLVFKSQHIQLQLAARLGYAQPSQ--CYDVYSRCPFEKHQLMTLIR 150 D ++C K L+C + S + DE+ I E I P S + QLAA LG ++ C YS+CP ++M ++R Sbjct: 358 DVADCGKLLVCELMS--RVDLDQDEKRIVNLFDDLEHIDPS----SGRSEYQLAAYLGSLNQTEAICVRRYSKCPMSTEEVMDIVR 597
BLAST of EMLSAG00000006935 vs. C. finmarchicus
Match: gi|592834429|gb|GAXK01123115.1| (TSA: Calanus finmarchicus comp3774591_c0_seq1 transcribed RNA sequence) HSP 1 Score: 31.9574 bits (71), Expect = 4.449e-1 Identity = 18/63 (28.57%), Postives = 28/63 (44.44%), Query Frame = 0 Query: 37 FSIDTALRSLSKAVFTHAILPNDSQIEEELRESSVQDTSECIKKLICIIHSIPSPERTWDERI 99 ++D LRS SK + + S+IEE +R ++HS PSP+ W R+ Sbjct: 80 MNMDIELRSSSKCEVCERVFNDQSEIEEHIR----------------MLHSKPSPKDVWKARL 220
BLAST of EMLSAG00000006935 vs. C. finmarchicus
Match: gi|592758716|gb|GAXK01195697.1| (TSA: Calanus finmarchicus comp2661996_c0_seq1 transcribed RNA sequence) HSP 1 Score: 31.9574 bits (71), Expect = 6.345e-1 Identity = 12/35 (34.29%), Postives = 23/35 (65.71%), Query Frame = 0 Query: 66 LRESSVQDTSECIKKLICIIHSIPSPERTWDERII 100 ++ ++ QDT +C KKL+C + +R+WDE ++ Sbjct: 6 VKAANFQDTDDCAKKLLCELSR--KKDRSWDEDLV 104
BLAST of EMLSAG00000006935 vs. C. finmarchicus
Match: gi|592957271|gb|GAXK01001285.1| (TSA: Calanus finmarchicus comp661245_c0_seq1 transcribed RNA sequence) HSP 1 Score: 30.0314 bits (66), Expect = 5.019e+0 Identity = 10/24 (41.67%), Postives = 15/24 (62.50%), Query Frame = 0 Query: 70 SVQDTSECIKKLICIIHSIPSPER 93 + Q +C+ L+CI H +PSP R Sbjct: 1073 NTQSFFQCVYPLVCIFHGVPSPSR 1144
BLAST of EMLSAG00000006935 vs. C. finmarchicus
Match: gi|592817355|gb|GAXK01137213.1| (TSA: Calanus finmarchicus comp164384_c2_seq1 transcribed RNA sequence) HSP 1 Score: 30.0314 bits (66), Expect = 6.599e+0 Identity = 22/58 (37.93%), Postives = 30/58 (51.72%), Query Frame = 0 Query: 14 ILSLEFSVLQVSSTYHLPTPPSSFSIDTALRSLS--------KAVFTHAILPNDSQIE 63 ILS FS +++ LPT P SF+ ++A+ LS AVF AI P DS + Sbjct: 2168 ILSPFFSASAITTLSPLPTIPQSFATESAVSRLSPVTITHLRDAVFNSAITPADSGLS 2341
BLAST of EMLSAG00000006935 vs. L. salmonis peptides
Match: EMLSAP00000006935 (pep:novel supercontig:LSalAtl2s:LSalAtl2s393:562990:566673:1 gene:EMLSAG00000006935 transcript:EMLSAT00000006935 description:"augustus_masked-LSalAtl2s393-processed-gene-5.2") HSP 1 Score: 382.874 bits (982), Expect = 1.139e-136 Identity = 188/188 (100.00%), Postives = 188/188 (100.00%), Query Frame = 0 Query: 1 MELSFVAVYLYIFILSLEFSVLQVSSTYHLPTPPSSFSIDTALRSLSKAVFTHAILPNDSQIEEELRESSVQDTSECIKKLICIIHSIPSPERTWDERIIAEAISPKLVFKSQHIQLQLAARLGYAQPSQCYDVYSRCPFEKHQLMTLIRQRGMSLNXPTSPDYDCTVIFLWKRKESKITFPSNDIDK 188 MELSFVAVYLYIFILSLEFSVLQVSSTYHLPTPPSSFSIDTALRSLSKAVFTHAILPNDSQIEEELRESSVQDTSECIKKLICIIHSIPSPERTWDERIIAEAISPKLVFKSQHIQLQLAARLGYAQPSQCYDVYSRCPFEKHQLMTLIRQRGMSLNXPTSPDYDCTVIFLWKRKESKITFPSNDIDK Sbjct: 1 MELSFVAVYLYIFILSLEFSVLQVSSTYHLPTPPSSFSIDTALRSLSKAVFTHAILPNDSQIEEELRESSVQDTSECIKKLICIIHSIPSPERTWDERIIAEAISPKLVFKSQHIQLQLAARLGYAQPSQCYDVYSRCPFEKHQLMTLIRQRGMSLNXPTSPDYDCTVIFLWKRKESKITFPSNDIDK 188
BLAST of EMLSAG00000006935 vs. L. salmonis peptides
Match: EMLSAP00000007336 (pep:novel supercontig:LSalAtl2s:LSalAtl2s414:24152:55376:1 gene:EMLSAG00000007336 transcript:EMLSAT00000007336 description:"maker-LSalAtl2s414-augustus-gene-0.14") HSP 1 Score: 51.9878 bits (123), Expect = 1.774e-8 Identity = 30/91 (32.97%), Postives = 51/91 (56.04%), Query Frame = 0 Query: 60 SQIEEELRESSVQDTSECIKKLICIIHSIPSPERTWDERIIAEAISPK-LVFKSQHIQLQLAARLG-YAQPSQCYDVYSRCPFEKHQLMTL 148 ++ EE L +S +D ++C K+L+C I S+P + +E IA A + L ++ +LAA++G QC +Y RCPF + +LM + Sbjct: 100 NEYEEILLSASQEDQNDCAKRLVCEISSLPPTAMSLEEVQIASAFNSNYLDISKATVEFELAAQIGKRVGLEQCSVIYKRCPFPRAKLMEI 190 HSP 2 Score: 48.9062 bits (115), Expect = 2.141e-7 Identity = 29/91 (31.87%), Postives = 50/91 (54.95%), Query Frame = 0 Query: 60 SQIEEELRESSVQDTSECIKKLICIIHSIPSPERTWDERIIAEAISPK-LVFKSQHIQLQLAARLG-YAQPSQCYDVYSRCPFEKHQLMTL 148 ++ EE L SS +D ++C K+L+C I S+P + +E IA + L ++ +LAA++G QC +Y RCP+ + +LM + Sbjct: 299 NEYEEILLSSSQEDQNDCTKRLVCEISSLPPTAMSPEEIQIASVFNSNYLDISKATVEFELAAQIGKRVGLEQCLVIYKRCPYPRAKLMEI 389
BLAST of EMLSAG00000006935 vs. L. salmonis peptides
Match: EMLSAP00000012085 (pep:novel supercontig:LSalAtl2s:LSalAtl2s864:165170:165932:1 gene:EMLSAG00000012085 transcript:EMLSAT00000012085 description:"maker-LSalAtl2s864-augustus-gene-0.15") HSP 1 Score: 50.0618 bits (118), Expect = 2.837e-8 Identity = 28/92 (30.43%), Postives = 46/92 (50.00%), Query Frame = 0 Query: 61 QIEEELRESSVQDTSECIKKLICIIHSIPSPERTWDERIIAEAISPK-LVFKSQHIQLQLAARLG-YAQPSQCYDVYSRCPFEKHQLMTLIR 150 + E L +S D S+C KKL+C + + + +E +IA +P L ++ LAA++G QC +Y RCP + QL+ + R Sbjct: 78 EFESVLLSASQHDASDCAKKLVCEVSGLTLEDMNSEETMIARLFNPDHLDVTKATVEFDLAAQIGKRVGIQQCSVIYERCPHSRRQLIDIFR 169
BLAST of EMLSAG00000006935 vs. L. salmonis peptides
Match: EMLSAP00000007339 (pep:novel supercontig:LSalAtl2s:LSalAtl2s414:6177:7412:1 gene:EMLSAG00000007339 transcript:EMLSAT00000007339 description:"snap_masked-LSalAtl2s414-processed-gene-0.6") HSP 1 Score: 48.9062 bits (115), Expect = 1.161e-7 Identity = 27/90 (30.00%), Postives = 46/90 (51.11%), Query Frame = 0 Query: 63 EEELRESSVQDTSECIKKLICIIHSIPSPERTWDERIIAEAISPK-LVFKSQHIQLQLAARLG-YAQPSQCYDVYSRCPFEKHQLMTLIR 150 E L +S D S+C KKL+C + + + +E +IA +P L ++ LAA++G + QC +Y RCP + +L+ + R Sbjct: 121 ESVLLSASQHDASDCAKKLVCEVSGLTLEDINSEETMIARLFNPDHLDVTKATVEFDLAAQIGKHVGIQQCSIIYQRCPHSRRKLIDIFR 210
BLAST of EMLSAG00000006935 vs. L. salmonis peptides
Match: EMLSAP00000007341 (pep:novel supercontig:LSalAtl2s:LSalAtl2s414:99526:112093:-1 gene:EMLSAG00000007341 transcript:EMLSAT00000007341 description:"maker-LSalAtl2s414-snap-gene-1.9") HSP 1 Score: 48.521 bits (114), Expect = 1.294e-7 Identity = 29/90 (32.22%), Postives = 49/90 (54.44%), Query Frame = 0 Query: 64 EELRESSVQDTSECIKKLICIIHSIPSPERTWDERIIAEAISPK-LVFKSQHIQLQLAARLG-YAQPSQCYDVYSRCPFEKHQLMTLIRQ 151 E L +S +D ++C K+L+C I S+P + +E IA A + L ++ +LAA++G QC +Y RCP K +LM + ++ Sbjct: 88 EILLSASQEDQNDCAKRLVCEISSLPPTAMSPEEIQIASAFNSNYLDISKATVEFELAAQIGKRVGLEQCLVIYKRCPHSKAKLMEIYKE 177
BLAST of EMLSAG00000006935 vs. L. salmonis peptides
Match: EMLSAP00000012084 (pep:novel supercontig:LSalAtl2s:LSalAtl2s864:141096:141668:1 gene:EMLSAG00000012084 transcript:EMLSAT00000012084 description:"augustus_masked-LSalAtl2s864-processed-gene-0.1") HSP 1 Score: 47.7506 bits (112), Expect = 2.621e-7 Identity = 27/90 (30.00%), Postives = 47/90 (52.22%), Query Frame = 0 Query: 61 QIEEELRESSVQDTSECIKKLICIIHSIPSPERTWDERIIAEAISPK-LVFKSQHIQLQLAARLG-YAQPSQCYDVYSRCPFEKHQLMTL 148 + E L ++ D S+C K+L+C ++ P + +E +IA +P L ++ LAA++G QC +Y RCP +K +LM + Sbjct: 91 EYETILLSAAQNDASDCAKRLVCEVNGTPLENFSKEETMIARLFNPDHLDITKITVEFDLAAQIGKRVGIEQCAVLYERCPHDKKKLMEI 180
BLAST of EMLSAG00000006935 vs. Tigriopus kingsejongenis genes
Match: maker-scaffold316_size209483-snap-gene-1.38 (protein:Tk05941 transcript:maker-scaffold316_size209483-snap-gene-1.38-mRNA-1 annotation:"PREDICTED: uncharacterized protein LOC103505216") HSP 1 Score: 138.272 bits (347), Expect = 8.448e-42 Identity = 68/140 (48.57%), Postives = 94/140 (67.14%), Query Frame = 0 Query: 37 FSIDTALRSLSKAVFTHAILPNDS-QIEEELRESSVQDTSECIKKLICIIHSIPSPERTWDERIIAEAISPKLVFKSQHIQLQLAARLGYAQPSQCYDVYSRCPFEKHQLMTLIRQRGMSLNXPTSPDYDCTVIFLWKRK 175 ++I +AL L KAV T+A+L S I ++L+ +S+QD+++C K+LIC + S E WDE +I + I P+L + S IQ QLAA LG P QC VYSRC F +M L+RQRG SL+ PT+P+YDCTV+FLW +K Sbjct: 35 YTIGSALTYLGKAVLTNALLAGRSFSILDDLQSASIQDSTDCAKRLICELKS--KKELDWDEELIMQTIPPQLDYASPIIQFQLAADLGQKNPEQCSIVYSRCHFNGEDIMKLMRQRGTSLDIPTNPEYDCTVLFLWNKK 172
BLAST of EMLSAG00000006935 vs. Tigriopus kingsejongenis genes
Match: maker-scaffold39_size501901-snap-gene-2.7 (protein:Tk00983 transcript:maker-scaffold39_size501901-snap-gene-2.7-mRNA-1 annotation:"glutamate ionotropic kainate 2") HSP 1 Score: 58.5362 bits (140), Expect = 1.211e-10 Identity = 31/94 (32.98%), Postives = 54/94 (57.45%), Query Frame = 0 Query: 60 SQIEEELRESSVQDTSECIKKLICIIHSIPSPERTWDERIIAEAI--SPKLVFKSQHIQLQLAARLGY-AQPSQCYDVYSRCPFEKHQLMTLIR 150 S IE+ ++S+ D +C K L+C+I+S P+ + + +E IIAE + ++ ++ LAA +G A SQC +Y+RCP + L+ +R Sbjct: 78 SSIEDSFLQASLVDADDCAKMLVCLINSAPAEDLSEEEEIIAEMFGQNDEINVSKSSVEFDLAALVGRKAGASQCKSLYARCPHNQKYLIDTLR 171 The following BLAST results are available for this feature:
BLAST of EMLSAG00000006935 vs. GO
Analysis Date: 2014-04-02 (Blast vs. GO) Total hits: 0
BLAST of EMLSAG00000006935 vs. C. finmarchicus
Analysis Date: 2014-05-09 (TblastN vs C. finmarchicus TSA) Total hits: 9
BLAST of EMLSAG00000006935 vs. L. salmonis peptides
Analysis Date: 2014-05-10 (Blastp vs. self) Total hits: 6
BLAST of EMLSAG00000006935 vs. SwissProt
Analysis Date: 2017-02-10 (Blastp vs. SwissProt) Total hits: 0
BLAST of EMLSAG00000006935 vs. Select Arthropod Genomes
Analysis Date: 2017-02-20 (Blastp vs. Selected Arthropods) Total hits: 0
BLAST of EMLSAG00000006935 vs. nr
Analysis Date: 2017-02-20 (Blastp vs. NR (2/2017)) Total hits: 0
BLAST of EMLSAG00000006935 vs. Tigriopus kingsejongenis genes
Analysis Date: 2018-04-18 (Blastp vs. Tigriopus kingsejongensis proteins) Total hits: 2
Alignments
The following features are aligned
Analyses
This gene is derived from or has results from the following analyses
Properties
Cross References
External references for this gene
Relationships
The following mRNA feature(s) are a part of this gene:
Sequences
The following sequences are available for this feature:
gene from alignment at LSalAtl2s393:562990..566673+ Legend: mRNA Hold the cursor over a type above to highlight its positions in the sequence below.>EMLSAG00000006935-689701 ID=EMLSAG00000006935-689701|Name=EMLSAG00000006935|organism=Lepeophtheirus salmonis|type=gene|length=3684bp|location=Sequence derived from alignment at LSalAtl2s393:562990..566673+ (Lepeophtheirus salmonis)back to top Add to Basket
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