EMLSAG00000000301, EMLSAG00000000301-683067 (gene) Lepeophtheirus salmonis

Overview
NameEMLSAG00000000301
Unique NameEMLSAG00000000301-683067
Typegene
OrganismLepeophtheirus salmonis (salmon louse)
Associated RNAi Experiments

Nothing found

Homology
BLAST of EMLSAG00000000301 vs. C. finmarchicus
Match: gi|592793374|gb|GAXK01161194.1| (TSA: Calanus finmarchicus comp34475_c3_seq1 transcribed RNA sequence)

HSP 1 Score: 44.2838 bits (103), Expect = 6.775e-5
Identity = 32/84 (38.10%), Postives = 50/84 (59.52%), Query Frame = 0
Query:    9 LRDEIESLKRDVTQANANHSKELDKIKKANDKVIIEYKDANKELQKQVGIC--SNRDAAEDSSQLIHQQMNKSDQSFKIDSSII 90
            L++E++ L++ +    A H +E+++ K AN KVI EYK+ NK LQ++V I   S RD    S  L      ++D S K D+S+I
Sbjct: 5067 LKNELKVLQKQMDTKTAQHEREVNRTKLANQKVIAEYKETNKVLQRRVEIVVDSPRDHDTTSPTL------EADDS-KTDASLI 5297          
BLAST of EMLSAG00000000301 vs. C. finmarchicus
Match: gi|592780680|gb|GAXK01173888.1| (TSA: Calanus finmarchicus comp4720363_c0_seq1 transcribed RNA sequence)

HSP 1 Score: 29.6462 bits (65), Expect = 3.709e+0
Identity = 17/55 (30.91%), Postives = 34/55 (61.82%), Query Frame = 0
Query:    8 LLRDEIESLKRDVTQANANHSKELDKIKKANDKVIIEYKDANKELQKQVGICSNR 62
            L R  I+ LK+++T+ ++   KEL+K+     K + EYK+ +K++   VG+  ++
Sbjct:   83 LFRPSIKELKKELTEEDS-RIKELEKVISTEAKKMNEYKEESKDMLIMVGVWQDK 244          
BLAST of EMLSAG00000000301 vs. L. salmonis peptides
Match: EMLSAP00000000301 (pep:novel supercontig:LSalAtl2s:LSalAtl2s1044:3402:4048:-1 gene:EMLSAG00000000301 transcript:EMLSAT00000000301 description:"snap_masked-LSalAtl2s1044-processed-gene-0.17")

HSP 1 Score: 320.087 bits (819), Expect = 1.235e-112
Identity = 163/163 (100.00%), Postives = 163/163 (100.00%), Query Frame = 0
Query:    1 MXGEVEDLLRDEIESLKRDVTQANANHSKELDKIKKANDKVIIEYKDANKELQKQVGICSNRDAAEDSSQLIHQQMNKSDQSFKIDSSIISTGLQSSGKKKRKVKGRNAQNNSTKSNNSSSILNESNVENEVNDIEGYLSSSRKSNKVTRSRPVHKTKKKRTI 163
            MXGEVEDLLRDEIESLKRDVTQANANHSKELDKIKKANDKVIIEYKDANKELQKQVGICSNRDAAEDSSQLIHQQMNKSDQSFKIDSSIISTGLQSSGKKKRKVKGRNAQNNSTKSNNSSSILNESNVENEVNDIEGYLSSSRKSNKVTRSRPVHKTKKKRTI
Sbjct:    1 MXGEVEDLLRDEIESLKRDVTQANANHSKELDKIKKANDKVIIEYKDANKELQKQVGICSNRDAAEDSSQLIHQQMNKSDQSFKIDSSIISTGLQSSGKKKRKVKGRNAQNNSTKSNNSSSILNESNVENEVNDIEGYLSSSRKSNKVTRSRPVHKTKKKRTI 163          
BLAST of EMLSAG00000000301 vs. L. salmonis peptides
Match: EMLSAP00000006390 (pep:novel supercontig:LSalAtl2s:LSalAtl2s350:207605:212969:1 gene:EMLSAG00000006390 transcript:EMLSAT00000006390 description:"maker-LSalAtl2s350-augustus-gene-2.6")

HSP 1 Score: 251.906 bits (642), Expect = 7.620e-78
Identity = 132/159 (83.02%), Postives = 142/159 (89.31%), Query Frame = 0
Query:    3 GEVEDLLRDEIESLKRDVTQANANHSKELDKIKKANDKVIIEYKDANKELQKQVGICSNRDAAEDSSQLIHQQMNKSDQSFKIDSSIISTGLQSSGKKKRKVKGRNAQNNSTKSNNSSSIL-NESNVENEVNDIEGYLSSSRKSNKVTRSRPVHKTKKK 160
            GEVEDL RDEIESLKRDV QANA HSKE DKIKKAN+KVI EYKDANKELQKQVGICSNRD A+DSSQL+HQQMN+SDQSFKIDSSI+ T LQ+SGKKKR+ K RN QNNSTK NNSSSIL NESNVENE+ND E  +S S+KSNKVTRSRPVHKTKKK
Sbjct:  980 GEVEDLPRDEIESLKRDVIQANAYHSKEFDKIKKANEKVINEYKDANKELQKQVGICSNRDTADDSSQLVHQQMNESDQSFKIDSSILPTELQASGKKKRRGKVRNTQNNSTKCNNSSSILVNESNVENELNDSENSVSRSQKSNKVTRSRPVHKTKKK 1138          
BLAST of EMLSAG00000000301 vs. L. salmonis peptides
Match: EMLSAP00000006410 (pep:novel supercontig:LSalAtl2s:LSalAtl2s350:759416:762862:1 gene:EMLSAG00000006410 transcript:EMLSAT00000006410 description:"maker-LSalAtl2s350-augustus-gene-6.33")

HSP 1 Score: 164.081 bits (414), Expect = 4.563e-52
Identity = 85/107 (79.44%), Postives = 92/107 (85.98%), Query Frame = 0
Query:    3 GEVEDLLRDEIESLKRDVTQANANHSKELDKIKKANDKVIIEYKDANKELQKQVGICSNRDAAEDSSQLIHQQMNKSDQSFKIDSSIISTGLQSSGKKKRKVKGRNA 109
            GEVEDLLRDEIESLK+DV QAN  HS ELDKI+KAN+KVI EYKDANKELQKQV ICSN+D A+DSSQL++QQMNKSDQSFKIDSSI S GLQ SGK K K K RN 
Sbjct:    9 GEVEDLLRDEIESLKQDVIQANIYHSMELDKIRKANEKVINEYKDANKELQKQVCICSNKDKADDSSQLVYQQMNKSDQSFKIDSSIQSAGLQISGKNKMKSKVRNV 115          
BLAST of EMLSAG00000000301 vs. L. salmonis peptides
Match: EMLSAP00000006900 (pep:novel supercontig:LSalAtl2s:LSalAtl2s390:414906:420715:1 gene:EMLSAG00000006900 transcript:EMLSAT00000006900 description:"augustus_masked-LSalAtl2s390-processed-gene-3.6")

HSP 1 Score: 69.3218 bits (168), Expect = 3.078e-14
Identity = 38/80 (47.50%), Postives = 59/80 (73.75%), Query Frame = 0
Query:    6 EDLLRDEIESLKRDVTQANANHSKELDKIKKANDKVIIEYKDANKELQKQVGICSNRDAAEDSSQLIHQQMNKSDQSFKI 85
            E+ L+ EI+SLK  +++AN  HS+E++KIK+ N KVI EYKDAN+ELQKQ+G+ SN   ++DS   + + M ++D+S  +
Sbjct:  500 ENSLKSEIDSLKCQISRANNKHSREIEKIKRTNGKVIQEYKDANRELQKQIGLTSN--ISDDS---LQKSMLEADESLNV 574          
BLAST of EMLSAG00000000301 vs. L. salmonis peptides
Match: EMLSAP00000006966 (pep:novel supercontig:LSalAtl2s:LSalAtl2s3965:4049:4449:-1 gene:EMLSAG00000006966 transcript:EMLSAT00000006966 description:"maker-LSalAtl2s3965-snap-gene-0.3")

HSP 1 Score: 48.1358 bits (113), Expect = 2.488e-8
Identity = 37/50 (74.00%), Postives = 39/50 (78.00%), Query Frame = 0
Query:   49 NKELQKQVGICSNRDAAEDSSQLIHQQMNKSDQSFKIDSSIISTGLQSSG 98
            NK    Q+G      AAEDSSQLIHQQMN+SDQSF IDSSIISTGLQSSG
Sbjct:   12 NKLAFVQIGF----SAAEDSSQLIHQQMNESDQSFXIDSSIISTGLQSSG 57          
The following BLAST results are available for this feature:
BLAST of EMLSAG00000000301 vs. GO
Analysis Date: 2014-04-02 (Blast vs. GO)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000000301 vs. C. finmarchicus
Analysis Date: 2014-05-09 (TblastN vs C. finmarchicus TSA)
Total hits: 2
Match NameE-valueIdentityDescription
gi|592793374|gb|GAXK01161194.1|6.775e-538.10TSA: Calanus finmarchicus comp34475_c3_seq1 transc... [more]
gi|592780680|gb|GAXK01173888.1|3.709e+030.91TSA: Calanus finmarchicus comp4720363_c0_seq1 tran... [more]
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BLAST of EMLSAG00000000301 vs. L. salmonis peptides
Analysis Date: 2014-05-10 (Blastp vs. self)
Total hits: 5
Match NameE-valueIdentityDescription
EMLSAP000000003011.235e-112100.00pep:novel supercontig:LSalAtl2s:LSalAtl2s1044:3402... [more]
EMLSAP000000063907.620e-7883.02pep:novel supercontig:LSalAtl2s:LSalAtl2s350:20760... [more]
EMLSAP000000064104.563e-5279.44pep:novel supercontig:LSalAtl2s:LSalAtl2s350:75941... [more]
EMLSAP000000069003.078e-1447.50pep:novel supercontig:LSalAtl2s:LSalAtl2s390:41490... [more]
EMLSAP000000069662.488e-874.00pep:novel supercontig:LSalAtl2s:LSalAtl2s3965:4049... [more]
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BLAST of EMLSAG00000000301 vs. SwissProt
Analysis Date: 2017-02-10 (Blastp vs. SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000000301 vs. Select Arthropod Genomes
Analysis Date: 2017-02-20 (Blastp vs. Selected Arthropods)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000000301 vs. nr
Analysis Date: 2017-02-20 (Blastp vs. NR (2/2017))
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000000301 vs. Tigriopus kingsejongenis genes
Analysis Date: 2018-04-18 (Blastp vs. Tigriopus kingsejongensis proteins)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
LSalAtl2s1044supercontigLSalAtl2s1044:3402..4048 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
ensembl2013-09-26 .965016
Blast vs. GO2014-04-02
TblastN vs C. finmarchicus TSA2014-05-09
Blastp vs. self2014-05-10
Blastp vs. SwissProt2017-02-10
Blastp vs. Selected Arthropods2017-02-20
Blastp vs. NR (2/2017)2017-02-20
Blastp vs. Tigriopus kingsejongensis proteins2018-04-18
Properties
Property NameValue
Logic nameensemblgenomes
Descriptionsnap_masked-LSalAtl2s1044-processed-gene-0.17
Biotypeprotein_coding
EvidenceIEA
NoteHypothetical protein
Cross References
External references for this gene
DatabaseAccession
Ensembl Metazoa (gene)EMLSAG00000000301 (primary cross-reference)
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
EMLSAT00000000301EMLSAT00000000301-696148Lepeophtheirus salmonismRNA


Sequences
The following sequences are available for this feature:

gene from alignment at LSalAtl2s1044:3402..4048-

Legend: mRNA
Hold the cursor over a type above to highlight its positions in the sequence below.
>EMLSAG00000000301-683067 ID=EMLSAG00000000301-683067|Name=EMLSAG00000000301|organism=Lepeophtheirus salmonis|type=gene|length=647bp|location=Sequence derived from alignment at LSalAtl2s1044:3402..4048- (Lepeophtheirus salmonis)
ATGANCGGAGAGGTTGAAGACTTGCTTAGAGACGAAATAGAGTCATTAAA ACGGGATGTAACCCAAGCAAACGCAAATCATTCAAAGGAACTAGATAAGA TCAAAAAAGCCAATGACAAAGTAATAATTGAATACAAGGATGCGAATAAG GAGCTCCAAAAACAAGTCGGCATTTGTTCAAATAGAGATGCTGCAGAGGA TTCTAGTCAATTAATTCATCAACAAATGAACAAATCAGATCAGAGCTTTA AAATCGACTCAAGCATCATATCAACTGGATTGCAAAGCTCTGGTAAAAAG AAAAGAAAGGTTAAAGGTAGAAATGCCCAAAATAATAGTACAAAATCCAA CAATAGCTCCTCAATTTTAAATGAAAGCAATGTTGAAAATGAAGTAAACG ATATTGAGGGCTATCTAAGTAGCTCACGGAAGTCAAATAAAGTCACTCGT TCACGTCCAGTTCATAAAACTAAGAAGAAACGCGTTAGTTATGTTGATAA AAGTTCTAGATCAGAACTAAGTTCCGTGGAAAAAGAAAGAAATACGCTTA AGGAAACACCCAATTCTGAATTTCATCATRCAGCCACTAAAAACACTCCA AAAAGATCAAACCGAACAACTAATTATAATACTTACAGACAATATGA
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