EMLSAG00000000301, EMLSAG00000000301-683067 (gene) Lepeophtheirus salmonis
Overview
Associated RNAi Experiments
Nothing found Homology
BLAST of EMLSAG00000000301 vs. C. finmarchicus
Match: gi|592793374|gb|GAXK01161194.1| (TSA: Calanus finmarchicus comp34475_c3_seq1 transcribed RNA sequence) HSP 1 Score: 44.2838 bits (103), Expect = 6.775e-5 Identity = 32/84 (38.10%), Postives = 50/84 (59.52%), Query Frame = 0 Query: 9 LRDEIESLKRDVTQANANHSKELDKIKKANDKVIIEYKDANKELQKQVGIC--SNRDAAEDSSQLIHQQMNKSDQSFKIDSSII 90 L++E++ L++ + A H +E+++ K AN KVI EYK+ NK LQ++V I S RD S L ++D S K D+S+I Sbjct: 5067 LKNELKVLQKQMDTKTAQHEREVNRTKLANQKVIAEYKETNKVLQRRVEIVVDSPRDHDTTSPTL------EADDS-KTDASLI 5297
BLAST of EMLSAG00000000301 vs. C. finmarchicus
Match: gi|592780680|gb|GAXK01173888.1| (TSA: Calanus finmarchicus comp4720363_c0_seq1 transcribed RNA sequence) HSP 1 Score: 29.6462 bits (65), Expect = 3.709e+0 Identity = 17/55 (30.91%), Postives = 34/55 (61.82%), Query Frame = 0 Query: 8 LLRDEIESLKRDVTQANANHSKELDKIKKANDKVIIEYKDANKELQKQVGICSNR 62 L R I+ LK+++T+ ++ KEL+K+ K + EYK+ +K++ VG+ ++ Sbjct: 83 LFRPSIKELKKELTEEDS-RIKELEKVISTEAKKMNEYKEESKDMLIMVGVWQDK 244
BLAST of EMLSAG00000000301 vs. L. salmonis peptides
Match: EMLSAP00000000301 (pep:novel supercontig:LSalAtl2s:LSalAtl2s1044:3402:4048:-1 gene:EMLSAG00000000301 transcript:EMLSAT00000000301 description:"snap_masked-LSalAtl2s1044-processed-gene-0.17") HSP 1 Score: 320.087 bits (819), Expect = 1.235e-112 Identity = 163/163 (100.00%), Postives = 163/163 (100.00%), Query Frame = 0 Query: 1 MXGEVEDLLRDEIESLKRDVTQANANHSKELDKIKKANDKVIIEYKDANKELQKQVGICSNRDAAEDSSQLIHQQMNKSDQSFKIDSSIISTGLQSSGKKKRKVKGRNAQNNSTKSNNSSSILNESNVENEVNDIEGYLSSSRKSNKVTRSRPVHKTKKKRTI 163 MXGEVEDLLRDEIESLKRDVTQANANHSKELDKIKKANDKVIIEYKDANKELQKQVGICSNRDAAEDSSQLIHQQMNKSDQSFKIDSSIISTGLQSSGKKKRKVKGRNAQNNSTKSNNSSSILNESNVENEVNDIEGYLSSSRKSNKVTRSRPVHKTKKKRTI Sbjct: 1 MXGEVEDLLRDEIESLKRDVTQANANHSKELDKIKKANDKVIIEYKDANKELQKQVGICSNRDAAEDSSQLIHQQMNKSDQSFKIDSSIISTGLQSSGKKKRKVKGRNAQNNSTKSNNSSSILNESNVENEVNDIEGYLSSSRKSNKVTRSRPVHKTKKKRTI 163
BLAST of EMLSAG00000000301 vs. L. salmonis peptides
Match: EMLSAP00000006390 (pep:novel supercontig:LSalAtl2s:LSalAtl2s350:207605:212969:1 gene:EMLSAG00000006390 transcript:EMLSAT00000006390 description:"maker-LSalAtl2s350-augustus-gene-2.6") HSP 1 Score: 251.906 bits (642), Expect = 7.620e-78 Identity = 132/159 (83.02%), Postives = 142/159 (89.31%), Query Frame = 0 Query: 3 GEVEDLLRDEIESLKRDVTQANANHSKELDKIKKANDKVIIEYKDANKELQKQVGICSNRDAAEDSSQLIHQQMNKSDQSFKIDSSIISTGLQSSGKKKRKVKGRNAQNNSTKSNNSSSIL-NESNVENEVNDIEGYLSSSRKSNKVTRSRPVHKTKKK 160 GEVEDL RDEIESLKRDV QANA HSKE DKIKKAN+KVI EYKDANKELQKQVGICSNRD A+DSSQL+HQQMN+SDQSFKIDSSI+ T LQ+SGKKKR+ K RN QNNSTK NNSSSIL NESNVENE+ND E +S S+KSNKVTRSRPVHKTKKK Sbjct: 980 GEVEDLPRDEIESLKRDVIQANAYHSKEFDKIKKANEKVINEYKDANKELQKQVGICSNRDTADDSSQLVHQQMNESDQSFKIDSSILPTELQASGKKKRRGKVRNTQNNSTKCNNSSSILVNESNVENELNDSENSVSRSQKSNKVTRSRPVHKTKKK 1138
BLAST of EMLSAG00000000301 vs. L. salmonis peptides
Match: EMLSAP00000006410 (pep:novel supercontig:LSalAtl2s:LSalAtl2s350:759416:762862:1 gene:EMLSAG00000006410 transcript:EMLSAT00000006410 description:"maker-LSalAtl2s350-augustus-gene-6.33") HSP 1 Score: 164.081 bits (414), Expect = 4.563e-52 Identity = 85/107 (79.44%), Postives = 92/107 (85.98%), Query Frame = 0 Query: 3 GEVEDLLRDEIESLKRDVTQANANHSKELDKIKKANDKVIIEYKDANKELQKQVGICSNRDAAEDSSQLIHQQMNKSDQSFKIDSSIISTGLQSSGKKKRKVKGRNA 109 GEVEDLLRDEIESLK+DV QAN HS ELDKI+KAN+KVI EYKDANKELQKQV ICSN+D A+DSSQL++QQMNKSDQSFKIDSSI S GLQ SGK K K K RN Sbjct: 9 GEVEDLLRDEIESLKQDVIQANIYHSMELDKIRKANEKVINEYKDANKELQKQVCICSNKDKADDSSQLVYQQMNKSDQSFKIDSSIQSAGLQISGKNKMKSKVRNV 115
BLAST of EMLSAG00000000301 vs. L. salmonis peptides
Match: EMLSAP00000006900 (pep:novel supercontig:LSalAtl2s:LSalAtl2s390:414906:420715:1 gene:EMLSAG00000006900 transcript:EMLSAT00000006900 description:"augustus_masked-LSalAtl2s390-processed-gene-3.6") HSP 1 Score: 69.3218 bits (168), Expect = 3.078e-14 Identity = 38/80 (47.50%), Postives = 59/80 (73.75%), Query Frame = 0 Query: 6 EDLLRDEIESLKRDVTQANANHSKELDKIKKANDKVIIEYKDANKELQKQVGICSNRDAAEDSSQLIHQQMNKSDQSFKI 85 E+ L+ EI+SLK +++AN HS+E++KIK+ N KVI EYKDAN+ELQKQ+G+ SN ++DS + + M ++D+S + Sbjct: 500 ENSLKSEIDSLKCQISRANNKHSREIEKIKRTNGKVIQEYKDANRELQKQIGLTSN--ISDDS---LQKSMLEADESLNV 574
BLAST of EMLSAG00000000301 vs. L. salmonis peptides
Match: EMLSAP00000006966 (pep:novel supercontig:LSalAtl2s:LSalAtl2s3965:4049:4449:-1 gene:EMLSAG00000006966 transcript:EMLSAT00000006966 description:"maker-LSalAtl2s3965-snap-gene-0.3") HSP 1 Score: 48.1358 bits (113), Expect = 2.488e-8 Identity = 37/50 (74.00%), Postives = 39/50 (78.00%), Query Frame = 0 Query: 49 NKELQKQVGICSNRDAAEDSSQLIHQQMNKSDQSFKIDSSIISTGLQSSG 98 NK Q+G AAEDSSQLIHQQMN+SDQSF IDSSIISTGLQSSG Sbjct: 12 NKLAFVQIGF----SAAEDSSQLIHQQMNESDQSFXIDSSIISTGLQSSG 57 The following BLAST results are available for this feature:
BLAST of EMLSAG00000000301 vs. GO
Analysis Date: 2014-04-02 (Blast vs. GO) Total hits: 0
BLAST of EMLSAG00000000301 vs. C. finmarchicus
Analysis Date: 2014-05-09 (TblastN vs C. finmarchicus TSA) Total hits: 2
BLAST of EMLSAG00000000301 vs. L. salmonis peptides
Analysis Date: 2014-05-10 (Blastp vs. self) Total hits: 5
BLAST of EMLSAG00000000301 vs. SwissProt
Analysis Date: 2017-02-10 (Blastp vs. SwissProt) Total hits: 0
BLAST of EMLSAG00000000301 vs. Select Arthropod Genomes
Analysis Date: 2017-02-20 (Blastp vs. Selected Arthropods) Total hits: 0
BLAST of EMLSAG00000000301 vs. nr
Analysis Date: 2017-02-20 (Blastp vs. NR (2/2017)) Total hits: 0
BLAST of EMLSAG00000000301 vs. Tigriopus kingsejongenis genes
Analysis Date: 2018-04-18 (Blastp vs. Tigriopus kingsejongensis proteins) Total hits: 0
Alignments
The following features are aligned
Analyses
This gene is derived from or has results from the following analyses
Properties
Cross References
External references for this gene
Relationships
The following mRNA feature(s) are a part of this gene:
Sequences
The following sequences are available for this feature:
gene from alignment at LSalAtl2s1044:3402..4048- Legend: mRNA Hold the cursor over a type above to highlight its positions in the sequence below.>EMLSAG00000000301-683067 ID=EMLSAG00000000301-683067|Name=EMLSAG00000000301|organism=Lepeophtheirus salmonis|type=gene|length=647bp|location=Sequence derived from alignment at LSalAtl2s1044:3402..4048- (Lepeophtheirus salmonis)back to top Add to Basket
|