EMLSAG00000000366, EMLSAG00000000366-683132 (gene) Lepeophtheirus salmonis
Overview
Associated RNAi Experiments
Nothing found Homology
BLAST of EMLSAG00000000366 vs. C. finmarchicus
Match: gi|592953585|gb|GAXK01004968.1| (TSA: Calanus finmarchicus comp348412_c0_seq1 transcribed RNA sequence) HSP 1 Score: 63.1586 bits (152), Expect = 1.662e-12 Identity = 33/77 (42.86%), Postives = 45/77 (58.44%), Query Frame = 0 Query: 32 DCQCQCIALSFYDEYGQQQGNCRSTFN-GAQWCYVENDGXSSCPXLKRSTRYRGKYYSNHACITLPAYSPECLGFVI 107 +C CQC +L+F DEYG+ GNC+S + GAQWCY+ + SSC L+ S ++ +S AC T S EC I Sbjct: 146 NCGCQCSSLTFRDEYGKVHGNCKSVDDKGAQWCYISSTHYSSCEDLQLSAKFPNNPWSYTACATPDLSSYECQALSI 376
BLAST of EMLSAG00000000366 vs. C. finmarchicus
Match: gi|592848676|gb|GAXK01108868.1| (TSA: Calanus finmarchicus comp296545_c0_seq1 transcribed RNA sequence) HSP 1 Score: 64.6994 bits (156), Expect = 2.104e-12 Identity = 37/106 (34.91%), Postives = 57/106 (53.77%), Query Frame = 0 Query: 4 IYIGIVLATCVYWSNAQQFAPAPINSQADCQCQCIALSFYDEYGQQQGNCRST-FNGAQWCYVENDGXSSCPXLKRSTRYRGKYYSNHACITLPAYSPECLGFVIY 108 +++ +ATC+ + P + +C CQC +L+F D+YG+ QGNC S GA+WCYV++ SSC L+ S R+ +S AC T + LG+ Y Sbjct: 464 VFLFFSMATCLRLT-----GPKAASPYTNCDCQCSSLTFQDKYGRIQGNCNSADHTGARWCYVDSAHHSSCQDLQHSARFPQNPWSYEACATPDRHQCGHLGYTGY 766 HSP 2 Score: 63.5438 bits (153), Expect = 4.917e-12 Identity = 36/106 (33.96%), Postives = 56/106 (52.83%), Query Frame = 0 Query: 4 IYIGIVLATCVYWSNAQQFAPAPINSQADCQCQCIALSFYDEYGQQQGNCRST-FNGAQWCYVENDGXSSCPXLKRSTRYRGKYYSNHACITLPAYSPECLGFVIY 108 +++ +A C+ + + +P +C CQC +L+F D+YG+ QGNC S GA+WCYV++ SSC L S R+ +S AC T + LG+ Y Sbjct: 100 VFLFFSMAACLRLTGPKAASP-----YTNCDCQCSSLNFQDKYGRIQGNCNSADHTGARWCYVDSAHHSSCQDLHHSVRFPNNPWSYEACATPDRHQCGHLGYTGY 402
BLAST of EMLSAG00000000366 vs. C. finmarchicus
Match: gi|592848675|gb|GAXK01108869.1| (TSA: Calanus finmarchicus comp296545_c0_seq2 transcribed RNA sequence) HSP 1 Score: 63.1586 bits (152), Expect = 2.781e-12 Identity = 36/106 (33.96%), Postives = 56/106 (52.83%), Query Frame = 0 Query: 4 IYIGIVLATCVYWSNAQQFAPAPINSQADCQCQCIALSFYDEYGQQQGNCRST-FNGAQWCYVENDGXSSCPXLKRSTRYRGKYYSNHACITLPAYSPECLGFVIY 108 +++ +A C+ + + +P +C CQC +L+F D+YG+ QGNC S GA+WCYV++ SSC L S R+ +S AC T + LG+ Y Sbjct: 148 VFLFFSMAACLRLTGPKAASP-----YTNCDCQCSSLTFQDKYGRIQGNCNSADHTGARWCYVDSAHHSSCQDLHHSARFPQNPWSYEACATPDRHQCGHLGYTGY 450
BLAST of EMLSAG00000000366 vs. C. finmarchicus
Match: gi|592772445|gb|GAXK01182123.1| (TSA: Calanus finmarchicus comp899023_c0_seq1 transcribed RNA sequence) HSP 1 Score: 62.7734 bits (151), Expect = 6.507e-12 Identity = 39/94 (41.49%), Postives = 48/94 (51.06%), Query Frame = 0 Query: 17 SNAQQFAPAPINSQADCQCQCIALSFYDEYGQQQGNCRSTFN-GAQWCYVEN----DGXSSCPXLKRSTRYRGKYYSNHACITLPAYSPECLGF 105 S AQ ++ +C CQC D YG+ QGNC S N GA WCYVE S+C LKRS R+ K++S AC T YS +C F Sbjct: 59 SLAQNGQTRAASTLVNCGCQCSNYRVMDRYGELQGNCDSVDNTGAAWCYVEQGEFVKTQSTCQDLKRSQRFPAKFWSYEACSTPSIYSTQCQLF 340
BLAST of EMLSAG00000000366 vs. C. finmarchicus
Match: gi|592932379|gb|GAXK01026174.1| (TSA: Calanus finmarchicus comp18158_c1_seq4 transcribed RNA sequence) HSP 1 Score: 58.5362 bits (140), Expect = 9.928e-11 Identity = 37/94 (39.36%), Postives = 51/94 (54.26%), Query Frame = 0 Query: 3 GIYIGIVL-ATCVYWSNAQQFAPAPINSQADCQCQCIALSFYDEYGQQQGNCRSTF-NGAQWCYVENDGXSSCPXLKRSTRYRGKYYSNHACIT 94 I+ +VL ATC+ N + +P +C CQC +L+F D G QGNC++ GAQWCYV++ SSC L S R+ +S AC T Sbjct: 55 SIFATLVLGATCLVLENQKAASPF-----TNCGCQCSSLTFRDTSGTVQGNCKTVDGTGAQWCYVDS-SSSSCQDLVPSERFPHNPWSYEACAT 318
BLAST of EMLSAG00000000366 vs. C. finmarchicus
Match: gi|592932365|gb|GAXK01026188.1| (TSA: Calanus finmarchicus comp18158_c2_seq13 transcribed RNA sequence) HSP 1 Score: 56.6102 bits (135), Expect = 3.069e-10 Identity = 32/66 (48.48%), Postives = 40/66 (60.61%), Query Frame = 0 Query: 31 ADCQCQCIALSFYDEYGQQQGNCRST-FNGAQWCYVENDGXSSCPXLK-RSTRYRGKYYSNHACIT 94 +C CQC L+F D+YG+ GNC+S+ GA WCYV SSC L STR+ GK +S AC T Sbjct: 1 TNCGCQCSNLTFRDKYGKTHGNCKSSDHTGAVWCYVSPAQTSSCQDLSYTSTRFPGKPWSYEACAT 198
BLAST of EMLSAG00000000366 vs. C. finmarchicus
Match: gi|592932366|gb|GAXK01026187.1| (TSA: Calanus finmarchicus comp18158_c2_seq12 transcribed RNA sequence) HSP 1 Score: 56.6102 bits (135), Expect = 3.437e-10 Identity = 32/66 (48.48%), Postives = 40/66 (60.61%), Query Frame = 0 Query: 31 ADCQCQCIALSFYDEYGQQQGNCRST-FNGAQWCYVENDGXSSCPXLK-RSTRYRGKYYSNHACIT 94 +C CQC L+F D+YG+ GNC+S+ GA WCYV SSC L STR+ GK +S AC T Sbjct: 1 TNCGCQCSNLTFRDKYGKTHGNCKSSDHTGAVWCYVSPAQTSSCQDLSYTSTRFPGKPWSYEACAT 198
BLAST of EMLSAG00000000366 vs. C. finmarchicus
Match: gi|592906544|gb|GAXK01051831.1| (TSA: Calanus finmarchicus comp28981_c1_seq1 transcribed RNA sequence) HSP 1 Score: 55.8398 bits (133), Expect = 1.343e-9 Identity = 31/67 (46.27%), Postives = 38/67 (56.72%), Query Frame = 0 Query: 35 CQCIALSFYDEYGQQQGNCRST-FNGAQWCYVENDGXSSCPXLKRSTRYRGKYYSNHACITLPAYSP 100 CQC +L+F D G QGNC+S GAQWCYV++ SSC L S R+ +S AC T Y P Sbjct: 368 CQCSSLTFIDSSGHIQGNCKSVDHTGAQWCYVDH-LHSSCQDLVHSARFPNNPWSYEACATPAVYQP 565
BLAST of EMLSAG00000000366 vs. C. finmarchicus
Match: gi|592932375|gb|GAXK01026178.1| (TSA: Calanus finmarchicus comp18158_c2_seq3 transcribed RNA sequence) HSP 1 Score: 56.9954 bits (136), Expect = 1.757e-9 Identity = 32/65 (49.23%), Postives = 40/65 (61.54%), Query Frame = 0 Query: 32 DCQCQCIALSFYDEYGQQQGNCRST-FNGAQWCYVENDGXSSCPXLK-RSTRYRGKYYSNHACIT 94 +C CQC L+F D+YG+ GNC+S+ GA WCYV SSC L STR+ GK +S AC T Sbjct: 4 NCGCQCSNLTFRDKYGKTHGNCKSSDHTGAVWCYVSPAQTSSCQDLSYTSTRFPGKPWSYEACAT 198
BLAST of EMLSAG00000000366 vs. C. finmarchicus
Match: gi|592932376|gb|GAXK01026177.1| (TSA: Calanus finmarchicus comp18158_c2_seq2 transcribed RNA sequence) HSP 1 Score: 56.6102 bits (135), Expect = 2.052e-9 Identity = 32/65 (49.23%), Postives = 40/65 (61.54%), Query Frame = 0 Query: 32 DCQCQCIALSFYDEYGQQQGNCRST-FNGAQWCYVENDGXSSCPXLK-RSTRYRGKYYSNHACIT 94 +C CQC L+F D+YG+ GNC+S+ GA WCYV SSC L STR+ GK +S AC T Sbjct: 4 NCGCQCSNLTFRDKYGKTHGNCKSSDHTGAVWCYVSPAQTSSCQDLSYTSTRFPGKPWSYEACAT 198
BLAST of EMLSAG00000000366 vs. L. salmonis peptides
Match: EMLSAP00000005421 (pep:novel supercontig:LSalAtl2s:LSalAtl2s292:107272:109821:1 gene:EMLSAG00000005421 transcript:EMLSAT00000005421 description:"maker-LSalAtl2s292-snap-gene-1.3") HSP 1 Score: 51.2174 bits (121), Expect = 1.713e-9 Identity = 26/65 (40.00%), Postives = 35/65 (53.85%), Query Frame = 0 Query: 56 TFNGAQWCYVENDGXSSCPXLKRSTRYRGKYYSNHACITLPAYSPECLGFVIYNEGNSGIQNSAP 120 TF ++CYV D S C LK ST++ GKY S HAC+T + C F ++N I N+ P Sbjct: 35 TFQEGKFCYVVGDSKSPCVDLKPSTQFMGKYISKHACLTPHLDTFLCKKFKLHNLLPKNILNNIP 99
BLAST of EMLSAG00000000366 vs. L. salmonis peptides
Match: EMLSAP00000006141 (pep:novel supercontig:LSalAtl2s:LSalAtl2s335:388935:390297:1 gene:EMLSAG00000006141 transcript:EMLSAT00000006141 description:"maker-LSalAtl2s335-snap-gene-4.14") HSP 1 Score: 46.9802 bits (110), Expect = 1.291e-7 Identity = 33/97 (34.02%), Postives = 50/97 (51.55%), Query Frame = 0 Query: 4 IYIGIVLATCV-YWSNAQQFAPAPINSQADCQCQCIALSFYDEYGQQQGNCRST-FNGAQWCYVENDGXSSCPXLKRSTRY--RG--KYYSNHACIT 94 + +GI+L C + +S+ +C CQC F D+YG+ QGNC + +GA+WCYV ++C + S+R RG + SN AC T Sbjct: 3 LKLGILLVVCACAIAQKNDIILKAASSRTNCGCQCNNYIFKDKYGRTQGNCNTADKSGAKWCYVSR--GNTCNDVTYSSRKDERGQPRRISNEACAT 97
BLAST of EMLSAG00000000366 vs. L. salmonis peptides
Match: EMLSAP00000006139 (pep:novel supercontig:LSalAtl2s:LSalAtl2s335:347119:354560:1 gene:EMLSAG00000006139 transcript:EMLSAT00000006139 description:"snap_masked-LSalAtl2s335-processed-gene-4.8") HSP 1 Score: 45.8246 bits (107), Expect = 6.950e-7 Identity = 33/99 (33.33%), Postives = 51/99 (51.52%), Query Frame = 0 Query: 1 MRGIYIGIVLATCVYWSNAQQFAPAPINSQADCQCQCIALSFYDEYGQQQGNCRST-FNGAQWCYVENDGXSSCPXLKRSTRY--RG--KYYSNHACIT 94 + ++ I+ T + N + A + Q +C CQC F D+YG+ QGNC + +GA+WCYV ++C + S+R RG + SN AC T Sbjct: 40 FKAVFFTIIACT-IAQKNDIKLKAASL--QTNCGCQCNNYIFLDKYGKTQGNCNTVDKSGAKWCYVSRG--NTCNDVTYSSRKDERGQPRRISNEACAT 133
BLAST of EMLSAG00000000366 vs. L. salmonis peptides
Match: EMLSAP00000001015 (pep:novel supercontig:LSalAtl2s:LSalAtl2s116:786764:792986:-1 gene:EMLSAG00000001015 transcript:EMLSAT00000001015 description:"maker-LSalAtl2s116-augustus-gene-8.13") HSP 1 Score: 45.0542 bits (105), Expect = 9.727e-7 Identity = 32/92 (34.78%), Postives = 43/92 (46.74%), Query Frame = 0 Query: 8 IVLATCVYWSNAQQFAPAPINSQADCQCQCIALSFYDEYGQQQGNCRST-FNGAQWCYVENDGXSSCPXLKRSTRY----RGKYYSNHACIT 94 ++L+ V + +AQ + +C CQC F D G QGNC S GA+WCYVE +C +RS R R + S AC T Sbjct: 6 LILSIFVAFGSAQDITLKAPSLAVNCGCQCSNYIFRDGNGITQGNCNSADRTGAKWCYVERG--HTCQDTRRSXRRDNFGRLRQISYEACAT 95
BLAST of EMLSAG00000000366 vs. nr
Match: gi|155966304|gb|ABU41105.1| (hypothetical protein [Lepeophtheirus salmonis]) HSP 1 Score: 265.388 bits (677), Expect = 6.082e-90 Identity = 129/131 (98.47%), Postives = 129/131 (98.47%), Query Frame = 0 Query: 1 MRGIYIGIVLATCVYWSNAQQFAPAPINSQADCQCQCIALSFYDEYGQQQGNCRSTFNGAQWCYVENDGXSSCPXLKRSTRYRGKYYSNHACITLPAYSPECLGFVIYNEGNSGIQNSAPPIAVAGSRGTI 131 MRGIYIGIVLATCVYWSNAQQFAPAPINSQADCQCQCIALSFYDEYGQQQGNCRSTFNGAQWCYVENDG SSCP LKRSTRYRGKYYSNHACITLPAYSPECLGFVIYNEGNSGIQNSAPPIAVAGSRGTI Sbjct: 1 MRGIYIGIVLATCVYWSNAQQFAPAPINSQADCQCQCIALSFYDEYGQQQGNCRSTFNGAQWCYVENDGYSSCPDLKRSTRYRGKYYSNHACITLPAYSPECLGFVIYNEGNSGIQNSAPPIAVAGSRGTI 131
BLAST of EMLSAG00000000366 vs. Tigriopus kingsejongenis genes
Match: maker-scaffold381_size190066-snap-gene-0.31 (protein:Tk01605 transcript:maker-scaffold381_size190066-snap-gene-0.31-mRNA-1 annotation:"hypothetical protein") HSP 1 Score: 51.6026 bits (122), Expect = 3.701e-9 Identity = 30/80 (37.50%), Postives = 41/80 (51.25%), Query Frame = 0 Query: 32 DCQCQCIALSFYDEYGQQQGNCRST-FNGAQWCYVENDGXSSCPXLKRSTRY-----RGKYYSNHACITLPAYSPECLGF 105 +C CQC ++ D G+ QGNCRS A WCY+ +SC +++S R + +S AC T SP CLGF Sbjct: 47 NCGCQCDPYTWRDTLGRVQGNCRSADATKALWCYIPASAFTSCADIRQSRNRLDNFGRPRRWSYEACSTPALTSPICLGF 126
BLAST of EMLSAG00000000366 vs. Tigriopus kingsejongenis genes
Match: maker-scaffold82_size396747-snap-gene-2.41 (protein:Tk06844 transcript:maker-scaffold82_size396747-snap-gene-2.41-mRNA-1 annotation:"hypothetical protein") HSP 1 Score: 51.2174 bits (121), Expect = 1.003e-8 Identity = 30/78 (38.46%), Postives = 42/78 (53.85%), Query Frame = 0 Query: 29 SQADCQCQCIALSFYDEYGQQQGNCRSTFNGAQWCYVENDGXSSCPXLKRSTRYRGKYYSNHACITLPAYSPECLGFV 106 +Q C CQC +F + GNC + GA WCYV++ G S+C S+R G ++S AC T P Y +CLG + Sbjct: 245 TQDVCDCQCNNYTFKFD-NTLHGNCLQPYKGALWCYVKDFGQSTCIDRLESSRVSGLFWSFQACGT-PKYQ-DCLGVI 319 The following BLAST results are available for this feature:
BLAST of EMLSAG00000000366 vs. GO
Analysis Date: 2014-04-02 (Blast vs. GO) Total hits: 0
BLAST of EMLSAG00000000366 vs. C. finmarchicus
Analysis Date: 2014-05-09 (TblastN vs C. finmarchicus TSA) Total hits: 25
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BLAST of EMLSAG00000000366 vs. L. salmonis peptides
Analysis Date: 2014-05-10 (Blastp vs. self) Total hits: 14
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BLAST of EMLSAG00000000366 vs. SwissProt
Analysis Date: 2017-02-10 (Blastp vs. SwissProt) Total hits: 0
BLAST of EMLSAG00000000366 vs. Select Arthropod Genomes
Analysis Date: 2017-02-20 (Blastp vs. Selected Arthropods) Total hits: 0
BLAST of EMLSAG00000000366 vs. nr
Analysis Date: 2017-02-20 (Blastp vs. NR (2/2017)) Total hits: 1
BLAST of EMLSAG00000000366 vs. Tigriopus kingsejongenis genes
Analysis Date: 2018-04-18 (Blastp vs. Tigriopus kingsejongensis proteins) Total hits: 2
Alignments
The following features are aligned
Analyses
This gene is derived from or has results from the following analyses
Properties
Cross References
External references for this gene
Relationships
The following mRNA feature(s) are a part of this gene:
Sequences
The following sequences are available for this feature:
gene from alignment at LSalAtl2s1053:57010..58418- Legend: mRNA Hold the cursor over a type above to highlight its positions in the sequence below.>EMLSAG00000000366-683132 ID=EMLSAG00000000366-683132|Name=EMLSAG00000000366|organism=Lepeophtheirus salmonis|type=gene|length=1409bp|location=Sequence derived from alignment at LSalAtl2s1053:57010..58418- (Lepeophtheirus salmonis)back to top Add to Basket
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