EMLSAG00000000366, EMLSAG00000000366-683132 (gene) Lepeophtheirus salmonis

Overview
NameEMLSAG00000000366
Unique NameEMLSAG00000000366-683132
Typegene
OrganismLepeophtheirus salmonis (salmon louse)
Associated RNAi Experiments

Nothing found

Homology
BLAST of EMLSAG00000000366 vs. C. finmarchicus
Match: gi|592932378|gb|GAXK01026175.1| (TSA: Calanus finmarchicus comp18158_c1_seq5 transcribed RNA sequence)

HSP 1 Score: 48.521 bits (114), Expect = 1.651e-7
Identity = 28/65 (43.08%), Postives = 37/65 (56.92%), Query Frame = 0
Query:   31 ADCQCQCIALSFYDEYGQQQGNCRST-FNGAQWCYVENDGXSSCPXLKRSTRYRGKYYSNHACIT 94
             +C CQC +L+F D     QGNC++    GAQWCYV++   SSC  L  S R+    +S  AC T
Sbjct:  124 TNCGCQCSSLTFRDSANIIQGNCKTVDSTGAQWCYVDS-SHSSCQDLVPSQRFPHNPWSYEACAT 315          
BLAST of EMLSAG00000000366 vs. C. finmarchicus
Match: gi|592932381|gb|GAXK01026172.1| (TSA: Calanus finmarchicus comp18158_c1_seq2 transcribed RNA sequence)

HSP 1 Score: 50.8322 bits (120), Expect = 1.700e-7
Identity = 28/64 (43.75%), Postives = 37/64 (57.81%), Query Frame = 0
Query:   32 DCQCQCIALSFYDEYGQQQGNCRST-FNGAQWCYVENDGXSSCPXLKRSTRYRGKYYSNHACIT 94
            +C CQC +L+F D     QGNC++    GAQWCYV++   SSC  L  S R+    +S  AC T
Sbjct:  127 NCGCQCSSLTFRDSANIIQGNCKTVDSTGAQWCYVDSS-HSSCQDLVPSQRFPHNPWSYEACAT 315          
BLAST of EMLSAG00000000366 vs. C. finmarchicus
Match: gi|592811147|gb|GAXK01143421.1| (TSA: Calanus finmarchicus comp1067486_c0_seq1 transcribed RNA sequence)

HSP 1 Score: 49.2914 bits (116), Expect = 3.066e-7
Identity = 33/79 (41.77%), Postives = 43/79 (54.43%), Query Frame = 0
Query:   29 SQADCQCQCIALSF--YDEYGQQQGNCRSTF-NGAQWCYVENDGXSSCPXLKRSTRYRGKYYSNHACITLPAYSPECLG 104
            SQ +C CQC +L++   D     QGNC S   NGA WCYV++   S+C  L+ S R+    +S  AC T P  S  C G
Sbjct:  121 SQVNCGCQCSSLTYQLKDAQSTVQGNCMSADPNGAVWCYVDSLS-STCRDLQPSKRFPNNPWSYEACTTPPRDSHLCSG 354          
BLAST of EMLSAG00000000366 vs. C. finmarchicus
Match: gi|592769570|gb|GAXK01184998.1| (TSA: Calanus finmarchicus comp921959_c0_seq1 transcribed RNA sequence)

HSP 1 Score: 48.521 bits (114), Expect = 8.683e-7
Identity = 34/111 (30.63%), Postives = 55/111 (49.55%), Query Frame = 0
Query:    8 IVLATCVYWSNAQQFAPAPINSQADCQCQCIALSFYDEYGQQQGNCRSTFNGAQWCYVEN-DGXSSCPXLKRSTRYRGKYYSNHACITLPAYSPECLGFVIYNEGNSGIQN 117
            +++ + +  +N++Q++     SQA C CQC+  +  ++ G   GNC++ + G  WCY E+  G   C    RS  Y G Y+S+ AC T       C   V   E  +G  N
Sbjct:  482 VMMMSIITDTNSKQYSL----SQA-CGCQCVDRTRPEDGG---GNCKTAYRGRLWCYTEDISGSVYCKDATRSNNYAGIYWSSDACFTPSVADQLCQAVV--KEKKTGCDN 784          
BLAST of EMLSAG00000000366 vs. C. finmarchicus
Match: gi|592956546|gb|GAXK01002010.1| (TSA: Calanus finmarchicus comp90527_c0_seq21 transcribed RNA sequence)

HSP 1 Score: 48.521 bits (114), Expect = 8.978e-7
Identity = 28/63 (44.44%), Postives = 36/63 (57.14%), Query Frame = 0
Query:   33 CQCQCIALSFYDEYGQQQGNCRST-FNGAQWCYVENDGXSSCPXLKRSTRYRGKYYSNHACIT 94
            C CQC +L + D+YG  QGNCRS     A+WCYV+    S+C  L  S R+    +S  AC T
Sbjct:  234 CGCQCSSLVWQDKYGDVQGNCRSADHTKAKWCYVKE--GSTCSDLVPSARHPRNPWSYQACAT 416          
BLAST of EMLSAG00000000366 vs. L. salmonis peptides
Match: EMLSAP00000005421 (pep:novel supercontig:LSalAtl2s:LSalAtl2s292:107272:109821:1 gene:EMLSAG00000005421 transcript:EMLSAT00000005421 description:"maker-LSalAtl2s292-snap-gene-1.3")

HSP 1 Score: 51.2174 bits (121), Expect = 1.713e-9
Identity = 26/65 (40.00%), Postives = 35/65 (53.85%), Query Frame = 0
Query:   56 TFNGAQWCYVENDGXSSCPXLKRSTRYRGKYYSNHACITLPAYSPECLGFVIYNEGNSGIQNSAP 120
            TF   ++CYV  D  S C  LK ST++ GKY S HAC+T    +  C  F ++N     I N+ P
Sbjct:   35 TFQEGKFCYVVGDSKSPCVDLKPSTQFMGKYISKHACLTPHLDTFLCKKFKLHNLLPKNILNNIP 99          
BLAST of EMLSAG00000000366 vs. L. salmonis peptides
Match: EMLSAP00000006141 (pep:novel supercontig:LSalAtl2s:LSalAtl2s335:388935:390297:1 gene:EMLSAG00000006141 transcript:EMLSAT00000006141 description:"maker-LSalAtl2s335-snap-gene-4.14")

HSP 1 Score: 46.9802 bits (110), Expect = 1.291e-7
Identity = 33/97 (34.02%), Postives = 50/97 (51.55%), Query Frame = 0
Query:    4 IYIGIVLATCV-YWSNAQQFAPAPINSQADCQCQCIALSFYDEYGQQQGNCRST-FNGAQWCYVENDGXSSCPXLKRSTRY--RG--KYYSNHACIT 94
            + +GI+L  C    +          +S+ +C CQC    F D+YG+ QGNC +   +GA+WCYV     ++C  +  S+R   RG  +  SN AC T
Sbjct:    3 LKLGILLVVCACAIAQKNDIILKAASSRTNCGCQCNNYIFKDKYGRTQGNCNTADKSGAKWCYVSR--GNTCNDVTYSSRKDERGQPRRISNEACAT 97          
BLAST of EMLSAG00000000366 vs. L. salmonis peptides
Match: EMLSAP00000006139 (pep:novel supercontig:LSalAtl2s:LSalAtl2s335:347119:354560:1 gene:EMLSAG00000006139 transcript:EMLSAT00000006139 description:"snap_masked-LSalAtl2s335-processed-gene-4.8")

HSP 1 Score: 45.8246 bits (107), Expect = 6.950e-7
Identity = 33/99 (33.33%), Postives = 51/99 (51.52%), Query Frame = 0
Query:    1 MRGIYIGIVLATCVYWSNAQQFAPAPINSQADCQCQCIALSFYDEYGQQQGNCRST-FNGAQWCYVENDGXSSCPXLKRSTRY--RG--KYYSNHACIT 94
             + ++  I+  T +   N  +   A +  Q +C CQC    F D+YG+ QGNC +   +GA+WCYV     ++C  +  S+R   RG  +  SN AC T
Sbjct:   40 FKAVFFTIIACT-IAQKNDIKLKAASL--QTNCGCQCNNYIFLDKYGKTQGNCNTVDKSGAKWCYVSRG--NTCNDVTYSSRKDERGQPRRISNEACAT 133          
BLAST of EMLSAG00000000366 vs. L. salmonis peptides
Match: EMLSAP00000001015 (pep:novel supercontig:LSalAtl2s:LSalAtl2s116:786764:792986:-1 gene:EMLSAG00000001015 transcript:EMLSAT00000001015 description:"maker-LSalAtl2s116-augustus-gene-8.13")

HSP 1 Score: 45.0542 bits (105), Expect = 9.727e-7
Identity = 32/92 (34.78%), Postives = 43/92 (46.74%), Query Frame = 0
Query:    8 IVLATCVYWSNAQQFAPAPINSQADCQCQCIALSFYDEYGQQQGNCRST-FNGAQWCYVENDGXSSCPXLKRSTRY----RGKYYSNHACIT 94
            ++L+  V + +AQ       +   +C CQC    F D  G  QGNC S    GA+WCYVE     +C   +RS R     R +  S  AC T
Sbjct:    6 LILSIFVAFGSAQDITLKAPSLAVNCGCQCSNYIFRDGNGITQGNCNSADRTGAKWCYVERG--HTCQDTRRSXRRDNFGRLRQISYEACAT 95          
BLAST of EMLSAG00000000366 vs. nr
Match: gi|155966304|gb|ABU41105.1| (hypothetical protein [Lepeophtheirus salmonis])

HSP 1 Score: 265.388 bits (677), Expect = 6.082e-90
Identity = 129/131 (98.47%), Postives = 129/131 (98.47%), Query Frame = 0
Query:    1 MRGIYIGIVLATCVYWSNAQQFAPAPINSQADCQCQCIALSFYDEYGQQQGNCRSTFNGAQWCYVENDGXSSCPXLKRSTRYRGKYYSNHACITLPAYSPECLGFVIYNEGNSGIQNSAPPIAVAGSRGTI 131
            MRGIYIGIVLATCVYWSNAQQFAPAPINSQADCQCQCIALSFYDEYGQQQGNCRSTFNGAQWCYVENDG SSCP LKRSTRYRGKYYSNHACITLPAYSPECLGFVIYNEGNSGIQNSAPPIAVAGSRGTI
Sbjct:    1 MRGIYIGIVLATCVYWSNAQQFAPAPINSQADCQCQCIALSFYDEYGQQQGNCRSTFNGAQWCYVENDGYSSCPDLKRSTRYRGKYYSNHACITLPAYSPECLGFVIYNEGNSGIQNSAPPIAVAGSRGTI 131          
BLAST of EMLSAG00000000366 vs. Tigriopus kingsejongenis genes
Match: maker-scaffold381_size190066-snap-gene-0.31 (protein:Tk01605 transcript:maker-scaffold381_size190066-snap-gene-0.31-mRNA-1 annotation:"hypothetical protein")

HSP 1 Score: 51.6026 bits (122), Expect = 3.701e-9
Identity = 30/80 (37.50%), Postives = 41/80 (51.25%), Query Frame = 0
Query:   32 DCQCQCIALSFYDEYGQQQGNCRST-FNGAQWCYVENDGXSSCPXLKRSTRY-----RGKYYSNHACITLPAYSPECLGF 105
            +C CQC   ++ D  G+ QGNCRS     A WCY+     +SC  +++S        R + +S  AC T    SP CLGF
Sbjct:   47 NCGCQCDPYTWRDTLGRVQGNCRSADATKALWCYIPASAFTSCADIRQSRNRLDNFGRPRRWSYEACSTPALTSPICLGF 126          
BLAST of EMLSAG00000000366 vs. Tigriopus kingsejongenis genes
Match: maker-scaffold82_size396747-snap-gene-2.41 (protein:Tk06844 transcript:maker-scaffold82_size396747-snap-gene-2.41-mRNA-1 annotation:"hypothetical protein")

HSP 1 Score: 51.2174 bits (121), Expect = 1.003e-8
Identity = 30/78 (38.46%), Postives = 42/78 (53.85%), Query Frame = 0
Query:   29 SQADCQCQCIALSFYDEYGQQQGNCRSTFNGAQWCYVENDGXSSCPXLKRSTRYRGKYYSNHACITLPAYSPECLGFV 106
            +Q  C CQC   +F  +     GNC   + GA WCYV++ G S+C     S+R  G ++S  AC T P Y  +CLG +
Sbjct:  245 TQDVCDCQCNNYTFKFD-NTLHGNCLQPYKGALWCYVKDFGQSTCIDRLESSRVSGLFWSFQACGT-PKYQ-DCLGVI 319          
The following BLAST results are available for this feature:
BLAST of EMLSAG00000000366 vs. GO
Analysis Date: 2014-04-02 (Blast vs. GO)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000000366 vs. C. finmarchicus
Analysis Date: 2014-05-09 (TblastN vs C. finmarchicus TSA)
Total hits: 25
Match NameE-valueIdentityDescription
gi|592932378|gb|GAXK01026175.1|1.651e-743.08TSA: Calanus finmarchicus comp18158_c1_seq5 transc... [more]
gi|592932381|gb|GAXK01026172.1|1.700e-743.75TSA: Calanus finmarchicus comp18158_c1_seq2 transc... [more]
gi|592811147|gb|GAXK01143421.1|3.066e-741.77TSA: Calanus finmarchicus comp1067486_c0_seq1 tran... [more]
gi|592769570|gb|GAXK01184998.1|8.683e-730.63TSA: Calanus finmarchicus comp921959_c0_seq1 trans... [more]
gi|592956546|gb|GAXK01002010.1|8.978e-744.44TSA: Calanus finmarchicus comp90527_c0_seq21 trans... [more]

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BLAST of EMLSAG00000000366 vs. L. salmonis peptides
Analysis Date: 2014-05-10 (Blastp vs. self)
Total hits: 14
Match NameE-valueIdentityDescription
EMLSAP000000054211.713e-940.00pep:novel supercontig:LSalAtl2s:LSalAtl2s292:10727... [more]
EMLSAP000000061411.291e-734.02pep:novel supercontig:LSalAtl2s:LSalAtl2s335:38893... [more]
EMLSAP000000061396.950e-733.33pep:novel supercontig:LSalAtl2s:LSalAtl2s335:34711... [more]
EMLSAP000000010159.727e-734.78pep:novel supercontig:LSalAtl2s:LSalAtl2s116:78676... [more]

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BLAST of EMLSAG00000000366 vs. SwissProt
Analysis Date: 2017-02-10 (Blastp vs. SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000000366 vs. Select Arthropod Genomes
Analysis Date: 2017-02-20 (Blastp vs. Selected Arthropods)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000000366 vs. nr
Analysis Date: 2017-02-20 (Blastp vs. NR (2/2017))
Total hits: 1
Match NameE-valueIdentityDescription
gi|155966304|gb|ABU41105.1|6.082e-9098.47hypothetical protein [Lepeophtheirus salmonis][more]
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BLAST of EMLSAG00000000366 vs. Tigriopus kingsejongenis genes
Analysis Date: 2018-04-18 (Blastp vs. Tigriopus kingsejongensis proteins)
Total hits: 2
Match NameE-valueIdentityDescription
maker-scaffold381_size190066-snap-gene-0.313.701e-937.50protein:Tk01605 transcript:maker-scaffold381_size1... [more]
maker-scaffold82_size396747-snap-gene-2.411.003e-838.46protein:Tk06844 transcript:maker-scaffold82_size39... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
LSalAtl2s1053supercontigLSalAtl2s1053:57010..58418 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
ensembl2013-09-26 .965016
Blast vs. GO2014-04-02
TblastN vs C. finmarchicus TSA2014-05-09
Blastp vs. self2014-05-10
Blastp vs. SwissProt2017-02-10
Blastp vs. Selected Arthropods2017-02-20
Blastp vs. NR (2/2017)2017-02-20
Blastp vs. Tigriopus kingsejongensis proteins2018-04-18
Properties
Property NameValue
Logic nameensemblgenomes
Descriptionsnap-LSalAtl2s1053-processed-gene-0.45
Biotypeprotein_coding
EvidenceIEA
Notehypothetical protein [Lepeophtheirus salmonis]
Cross References
External references for this gene
DatabaseAccession
Ensembl Metazoa (gene)EMLSAG00000000366 (primary cross-reference)
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
EMLSAT00000000366EMLSAT00000000366-696213Lepeophtheirus salmonismRNA


Sequences
The following sequences are available for this feature:

gene from alignment at LSalAtl2s1053:57010..58418-

Legend: mRNA
Hold the cursor over a type above to highlight its positions in the sequence below.
>EMLSAG00000000366-683132 ID=EMLSAG00000000366-683132|Name=EMLSAG00000000366|organism=Lepeophtheirus salmonis|type=gene|length=1409bp|location=Sequence derived from alignment at LSalAtl2s1053:57010..58418- (Lepeophtheirus salmonis)
ATGAGAGGAATATACATTGGAATCGTTTTAGCTACTTGTGTATATTGGTC TAATGCACAACAATTTGCCCCAGCTCCAATTAATAGCCAAGCAGACTGTC AATGCCAATGCATCGCACTCAGCTTCTACGACGAATACGGCCAGCAGCAA GGAAATTGCAGGAGGTACAATCCTATTTTATAATTACCTATGCGTGATAT TTAAGTTCACACGTAAGATTGTTTGTCAAACTTTACACACAACTAATTCC TGGAAACAGACAGTGAGAACAAAATTAAGTTTATGTCCAGAAAATAATAA CTGAAATCAACATTTTTCATTCAAGATGGGTGGAGGGATTGGACCCCNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGGTCC CTATGTGATTTATTTTAGCACTTCATGTGTTTTAATATTATTTTCCTAAT GTAGCACCCTCTKCCTTTTTGCACCCTATTCATTACAGGGGGGYCCTATG CRRCCCCCCCCCCCCCTGMGACRCCKCTTCTAAATMTTCCKTGGAATAAT AATTATTGTTATATTTTTTATATATAGCACGTTCAACGGAGCTCAATGGT GTTATGTTGAGAATGATGGCTAKAGTTCGTGCCCCGKTCTTAAACGTTCT ACACGGTATCGAGGAAAATACTACTCTAATCATGCTTGTATTACCCTTCC TGCATACTCGCCGGAATGTCTTGGTTTTGTTATATACAATGAAGGTAATT CTGGAATACAAAATAGTGCTCCACCAATAGCTGTGGCAGGATCAAGGGGT ACCATATAA
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