EMLSAG00000000366, EMLSAG00000000366-683132 (gene) Lepeophtheirus salmonis
Overview
Associated RNAi Experiments
Nothing found Homology
BLAST of EMLSAG00000000366 vs. C. finmarchicus
Match: gi|592932378|gb|GAXK01026175.1| (TSA: Calanus finmarchicus comp18158_c1_seq5 transcribed RNA sequence) HSP 1 Score: 48.521 bits (114), Expect = 1.651e-7 Identity = 28/65 (43.08%), Postives = 37/65 (56.92%), Query Frame = 0 Query: 31 ADCQCQCIALSFYDEYGQQQGNCRST-FNGAQWCYVENDGXSSCPXLKRSTRYRGKYYSNHACIT 94 +C CQC +L+F D QGNC++ GAQWCYV++ SSC L S R+ +S AC T Sbjct: 124 TNCGCQCSSLTFRDSANIIQGNCKTVDSTGAQWCYVDS-SHSSCQDLVPSQRFPHNPWSYEACAT 315
BLAST of EMLSAG00000000366 vs. C. finmarchicus
Match: gi|592932381|gb|GAXK01026172.1| (TSA: Calanus finmarchicus comp18158_c1_seq2 transcribed RNA sequence) HSP 1 Score: 50.8322 bits (120), Expect = 1.700e-7 Identity = 28/64 (43.75%), Postives = 37/64 (57.81%), Query Frame = 0 Query: 32 DCQCQCIALSFYDEYGQQQGNCRST-FNGAQWCYVENDGXSSCPXLKRSTRYRGKYYSNHACIT 94 +C CQC +L+F D QGNC++ GAQWCYV++ SSC L S R+ +S AC T Sbjct: 127 NCGCQCSSLTFRDSANIIQGNCKTVDSTGAQWCYVDSS-HSSCQDLVPSQRFPHNPWSYEACAT 315
BLAST of EMLSAG00000000366 vs. C. finmarchicus
Match: gi|592811147|gb|GAXK01143421.1| (TSA: Calanus finmarchicus comp1067486_c0_seq1 transcribed RNA sequence) HSP 1 Score: 49.2914 bits (116), Expect = 3.066e-7 Identity = 33/79 (41.77%), Postives = 43/79 (54.43%), Query Frame = 0 Query: 29 SQADCQCQCIALSF--YDEYGQQQGNCRSTF-NGAQWCYVENDGXSSCPXLKRSTRYRGKYYSNHACITLPAYSPECLG 104 SQ +C CQC +L++ D QGNC S NGA WCYV++ S+C L+ S R+ +S AC T P S C G Sbjct: 121 SQVNCGCQCSSLTYQLKDAQSTVQGNCMSADPNGAVWCYVDSLS-STCRDLQPSKRFPNNPWSYEACTTPPRDSHLCSG 354
BLAST of EMLSAG00000000366 vs. C. finmarchicus
Match: gi|592769570|gb|GAXK01184998.1| (TSA: Calanus finmarchicus comp921959_c0_seq1 transcribed RNA sequence) HSP 1 Score: 48.521 bits (114), Expect = 8.683e-7 Identity = 34/111 (30.63%), Postives = 55/111 (49.55%), Query Frame = 0 Query: 8 IVLATCVYWSNAQQFAPAPINSQADCQCQCIALSFYDEYGQQQGNCRSTFNGAQWCYVEN-DGXSSCPXLKRSTRYRGKYYSNHACITLPAYSPECLGFVIYNEGNSGIQN 117 +++ + + +N++Q++ SQA C CQC+ + ++ G GNC++ + G WCY E+ G C RS Y G Y+S+ AC T C V E +G N Sbjct: 482 VMMMSIITDTNSKQYSL----SQA-CGCQCVDRTRPEDGG---GNCKTAYRGRLWCYTEDISGSVYCKDATRSNNYAGIYWSSDACFTPSVADQLCQAVV--KEKKTGCDN 784
BLAST of EMLSAG00000000366 vs. C. finmarchicus
Match: gi|592956546|gb|GAXK01002010.1| (TSA: Calanus finmarchicus comp90527_c0_seq21 transcribed RNA sequence) HSP 1 Score: 48.521 bits (114), Expect = 8.978e-7 Identity = 28/63 (44.44%), Postives = 36/63 (57.14%), Query Frame = 0 Query: 33 CQCQCIALSFYDEYGQQQGNCRST-FNGAQWCYVENDGXSSCPXLKRSTRYRGKYYSNHACIT 94 C CQC +L + D+YG QGNCRS A+WCYV+ S+C L S R+ +S AC T Sbjct: 234 CGCQCSSLVWQDKYGDVQGNCRSADHTKAKWCYVKE--GSTCSDLVPSARHPRNPWSYQACAT 416
BLAST of EMLSAG00000000366 vs. L. salmonis peptides
Match: EMLSAP00000005421 (pep:novel supercontig:LSalAtl2s:LSalAtl2s292:107272:109821:1 gene:EMLSAG00000005421 transcript:EMLSAT00000005421 description:"maker-LSalAtl2s292-snap-gene-1.3") HSP 1 Score: 51.2174 bits (121), Expect = 1.713e-9 Identity = 26/65 (40.00%), Postives = 35/65 (53.85%), Query Frame = 0 Query: 56 TFNGAQWCYVENDGXSSCPXLKRSTRYRGKYYSNHACITLPAYSPECLGFVIYNEGNSGIQNSAP 120 TF ++CYV D S C LK ST++ GKY S HAC+T + C F ++N I N+ P Sbjct: 35 TFQEGKFCYVVGDSKSPCVDLKPSTQFMGKYISKHACLTPHLDTFLCKKFKLHNLLPKNILNNIP 99
BLAST of EMLSAG00000000366 vs. L. salmonis peptides
Match: EMLSAP00000006141 (pep:novel supercontig:LSalAtl2s:LSalAtl2s335:388935:390297:1 gene:EMLSAG00000006141 transcript:EMLSAT00000006141 description:"maker-LSalAtl2s335-snap-gene-4.14") HSP 1 Score: 46.9802 bits (110), Expect = 1.291e-7 Identity = 33/97 (34.02%), Postives = 50/97 (51.55%), Query Frame = 0 Query: 4 IYIGIVLATCV-YWSNAQQFAPAPINSQADCQCQCIALSFYDEYGQQQGNCRST-FNGAQWCYVENDGXSSCPXLKRSTRY--RG--KYYSNHACIT 94 + +GI+L C + +S+ +C CQC F D+YG+ QGNC + +GA+WCYV ++C + S+R RG + SN AC T Sbjct: 3 LKLGILLVVCACAIAQKNDIILKAASSRTNCGCQCNNYIFKDKYGRTQGNCNTADKSGAKWCYVSR--GNTCNDVTYSSRKDERGQPRRISNEACAT 97
BLAST of EMLSAG00000000366 vs. L. salmonis peptides
Match: EMLSAP00000006139 (pep:novel supercontig:LSalAtl2s:LSalAtl2s335:347119:354560:1 gene:EMLSAG00000006139 transcript:EMLSAT00000006139 description:"snap_masked-LSalAtl2s335-processed-gene-4.8") HSP 1 Score: 45.8246 bits (107), Expect = 6.950e-7 Identity = 33/99 (33.33%), Postives = 51/99 (51.52%), Query Frame = 0 Query: 1 MRGIYIGIVLATCVYWSNAQQFAPAPINSQADCQCQCIALSFYDEYGQQQGNCRST-FNGAQWCYVENDGXSSCPXLKRSTRY--RG--KYYSNHACIT 94 + ++ I+ T + N + A + Q +C CQC F D+YG+ QGNC + +GA+WCYV ++C + S+R RG + SN AC T Sbjct: 40 FKAVFFTIIACT-IAQKNDIKLKAASL--QTNCGCQCNNYIFLDKYGKTQGNCNTVDKSGAKWCYVSRG--NTCNDVTYSSRKDERGQPRRISNEACAT 133
BLAST of EMLSAG00000000366 vs. L. salmonis peptides
Match: EMLSAP00000001015 (pep:novel supercontig:LSalAtl2s:LSalAtl2s116:786764:792986:-1 gene:EMLSAG00000001015 transcript:EMLSAT00000001015 description:"maker-LSalAtl2s116-augustus-gene-8.13") HSP 1 Score: 45.0542 bits (105), Expect = 9.727e-7 Identity = 32/92 (34.78%), Postives = 43/92 (46.74%), Query Frame = 0 Query: 8 IVLATCVYWSNAQQFAPAPINSQADCQCQCIALSFYDEYGQQQGNCRST-FNGAQWCYVENDGXSSCPXLKRSTRY----RGKYYSNHACIT 94 ++L+ V + +AQ + +C CQC F D G QGNC S GA+WCYVE +C +RS R R + S AC T Sbjct: 6 LILSIFVAFGSAQDITLKAPSLAVNCGCQCSNYIFRDGNGITQGNCNSADRTGAKWCYVERG--HTCQDTRRSXRRDNFGRLRQISYEACAT 95
BLAST of EMLSAG00000000366 vs. nr
Match: gi|155966304|gb|ABU41105.1| (hypothetical protein [Lepeophtheirus salmonis]) HSP 1 Score: 265.388 bits (677), Expect = 6.082e-90 Identity = 129/131 (98.47%), Postives = 129/131 (98.47%), Query Frame = 0 Query: 1 MRGIYIGIVLATCVYWSNAQQFAPAPINSQADCQCQCIALSFYDEYGQQQGNCRSTFNGAQWCYVENDGXSSCPXLKRSTRYRGKYYSNHACITLPAYSPECLGFVIYNEGNSGIQNSAPPIAVAGSRGTI 131 MRGIYIGIVLATCVYWSNAQQFAPAPINSQADCQCQCIALSFYDEYGQQQGNCRSTFNGAQWCYVENDG SSCP LKRSTRYRGKYYSNHACITLPAYSPECLGFVIYNEGNSGIQNSAPPIAVAGSRGTI Sbjct: 1 MRGIYIGIVLATCVYWSNAQQFAPAPINSQADCQCQCIALSFYDEYGQQQGNCRSTFNGAQWCYVENDGYSSCPDLKRSTRYRGKYYSNHACITLPAYSPECLGFVIYNEGNSGIQNSAPPIAVAGSRGTI 131
BLAST of EMLSAG00000000366 vs. Tigriopus kingsejongenis genes
Match: maker-scaffold381_size190066-snap-gene-0.31 (protein:Tk01605 transcript:maker-scaffold381_size190066-snap-gene-0.31-mRNA-1 annotation:"hypothetical protein") HSP 1 Score: 51.6026 bits (122), Expect = 3.701e-9 Identity = 30/80 (37.50%), Postives = 41/80 (51.25%), Query Frame = 0 Query: 32 DCQCQCIALSFYDEYGQQQGNCRST-FNGAQWCYVENDGXSSCPXLKRSTRY-----RGKYYSNHACITLPAYSPECLGF 105 +C CQC ++ D G+ QGNCRS A WCY+ +SC +++S R + +S AC T SP CLGF Sbjct: 47 NCGCQCDPYTWRDTLGRVQGNCRSADATKALWCYIPASAFTSCADIRQSRNRLDNFGRPRRWSYEACSTPALTSPICLGF 126
BLAST of EMLSAG00000000366 vs. Tigriopus kingsejongenis genes
Match: maker-scaffold82_size396747-snap-gene-2.41 (protein:Tk06844 transcript:maker-scaffold82_size396747-snap-gene-2.41-mRNA-1 annotation:"hypothetical protein") HSP 1 Score: 51.2174 bits (121), Expect = 1.003e-8 Identity = 30/78 (38.46%), Postives = 42/78 (53.85%), Query Frame = 0 Query: 29 SQADCQCQCIALSFYDEYGQQQGNCRSTFNGAQWCYVENDGXSSCPXLKRSTRYRGKYYSNHACITLPAYSPECLGFV 106 +Q C CQC +F + GNC + GA WCYV++ G S+C S+R G ++S AC T P Y +CLG + Sbjct: 245 TQDVCDCQCNNYTFKFD-NTLHGNCLQPYKGALWCYVKDFGQSTCIDRLESSRVSGLFWSFQACGT-PKYQ-DCLGVI 319 The following BLAST results are available for this feature:
BLAST of EMLSAG00000000366 vs. GO
Analysis Date: 2014-04-02 (Blast vs. GO) Total hits: 0
BLAST of EMLSAG00000000366 vs. C. finmarchicus
Analysis Date: 2014-05-09 (TblastN vs C. finmarchicus TSA) Total hits: 25
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BLAST of EMLSAG00000000366 vs. L. salmonis peptides
Analysis Date: 2014-05-10 (Blastp vs. self) Total hits: 14
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BLAST of EMLSAG00000000366 vs. SwissProt
Analysis Date: 2017-02-10 (Blastp vs. SwissProt) Total hits: 0
BLAST of EMLSAG00000000366 vs. Select Arthropod Genomes
Analysis Date: 2017-02-20 (Blastp vs. Selected Arthropods) Total hits: 0
BLAST of EMLSAG00000000366 vs. nr
Analysis Date: 2017-02-20 (Blastp vs. NR (2/2017)) Total hits: 1
BLAST of EMLSAG00000000366 vs. Tigriopus kingsejongenis genes
Analysis Date: 2018-04-18 (Blastp vs. Tigriopus kingsejongensis proteins) Total hits: 2
Alignments
The following features are aligned
Analyses
This gene is derived from or has results from the following analyses
Properties
Cross References
External references for this gene
Relationships
The following mRNA feature(s) are a part of this gene:
Sequences
The following sequences are available for this feature:
gene from alignment at LSalAtl2s1053:57010..58418- Legend: mRNA Hold the cursor over a type above to highlight its positions in the sequence below.>EMLSAG00000000366-683132 ID=EMLSAG00000000366-683132|Name=EMLSAG00000000366|organism=Lepeophtheirus salmonis|type=gene|length=1409bp|location=Sequence derived from alignment at LSalAtl2s1053:57010..58418- (Lepeophtheirus salmonis)back to top Add to Basket
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