EMLSAG00000001274, EMLSAG00000001274-684040 (gene) Lepeophtheirus salmonis

Overview
NameEMLSAG00000001274
Unique NameEMLSAG00000001274-684040
Typegene
OrganismLepeophtheirus salmonis (salmon louse)
Associated RNAi Experiments

Nothing found

Homology
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BLAST of EMLSAG00000001274 vs. C. finmarchicus
Match: gi|592856316|gb|GAXK01101228.1| (TSA: Calanus finmarchicus comp6189_c0_seq1 transcribed RNA sequence)

HSP 1 Score: 49.6766 bits (117), Expect = 2.715e-7
Identity = 41/117 (35.04%), Postives = 54/117 (46.15%), Query Frame = 0 
Query:    1 DLLEELGVNDLFRIPVLVSNHSFEVSKEGEVTSFKTYTVAKSMELKFEV-----------------------------KNKKDGQKTNKTVCDFKHGKCMLVTLVV-GSKYKSTQVF 87
            +LL+EL VN L R    VS    EVS+EG V + KT T  K+MELKF++                             K KK+GQK+ K+V +      M+ T+ V GS   S Q F
Sbjct:  315 ELLKELDVNFLLRKAATVSTPVMEVSEEGGVWNIKTSTTLKTMELKFKLGEAFDETTPDGREVVATVTCEDGKIVTVQKAKKEGQKSTKSVREMNGADEMVYTITVDGSDLVSVQKF 665
[Close]
BLAST of EMLSAG00000001274 vs. C. finmarchicus
Match: gi|592892391|gb|GAXK01065984.1| (TSA: Calanus finmarchicus comp5093_c0_seq1 transcribed RNA sequence)

HSP 1 Score: 46.2098 bits (108), Expect = 1.040e-6
Identity = 30/78 (38.46%), Postives = 43/78 (55.13%), Query Frame = 0 
Query:    1 DLLEELGVNDLFRIPVLVSNHSFEVSKEGEVTSFKTYTVAKSMELKFEV-----KNKKDGQKTNKTVCDFKHGKCMLV 73
            D L+ L VN L R    VS  + E+S+ G V + KT T  KSMELKF++     +   DG++ +  V  F+ GK + V
Sbjct:   87 DFLKALDVNMLLRKAATVSTPTVEISEAGGVWTIKTSTTLKSMELKFKLGEEFEETTADGRQVS-AVVTFEDGKIITV 317
[Close]
BLAST of EMLSAG00000001274 vs. C. finmarchicus
Match: gi|592766264|gb|GAXK01188304.1| (TSA: Calanus finmarchicus comp11284_c1_seq2 transcribed RNA sequence)

HSP 1 Score: 45.0542 bits (105), Expect = 3.902e-6
Identity = 31/90 (34.44%), Postives = 48/90 (53.33%), Query Frame = 0 
Query:    1 DLLEELGVNDLFRIPVLVSNHSFEVSKEGEVTSFKTYTVAKSMELKFEV-----KNKKDGQKTNKTVCDFKHGKCMLVTLVVGSKYKSTQ 85
            + L+ L VN L R    VS    E+++   V S K+ T  KSMELKF+V     +   DG+   K++C+F+ GK + +     +  KST+
Sbjct:   95 EFLKVLDVNYLLRKAATVSTPVMEITENNGVWSIKSSTSLKSMELKFKVGVEFDETSADGRDV-KSICNFEGGKIVTIQTAKKASQKSTR 361
[Close]
BLAST of EMLSAG00000001274 vs. C. finmarchicus
Match: gi|592766265|gb|GAXK01188303.1| (TSA: Calanus finmarchicus comp11284_c1_seq1 transcribed RNA sequence)

HSP 1 Score: 45.0542 bits (105), Expect = 5.515e-6
Identity = 31/90 (34.44%), Postives = 48/90 (53.33%), Query Frame = 0 
Query:    1 DLLEELGVNDLFRIPVLVSNHSFEVSKEGEVTSFKTYTVAKSMELKFEV-----KNKKDGQKTNKTVCDFKHGKCMLVTLVVGSKYKSTQ 85
            + L+ L VN L R    VS    E+++   V S K+ T  KSMELKF+V     +   DG+   K++C+F+ GK + +     +  KST+
Sbjct:   95 EFLKVLDVNYLLRKAATVSTPVMEITENNGVWSIKSSTSLKSMELKFKVGVEFDETSADGRDV-KSICNFEGGKIVTIQTAKKASQKSTR 361
[Close]
BLAST of EMLSAG00000001274 vs. C. finmarchicus
Match: gi|592785878|gb|GAXK01168690.1| (TSA: Calanus finmarchicus comp891_c0_seq1 transcribed RNA sequence)

HSP 1 Score: 42.3578 bits (98), Expect = 2.550e-5
Identity = 33/106 (31.13%), Postives = 46/106 (43.40%), Query Frame = 0 
Query:    1 DLLEELGVNDLFRIPVLVSNHSFEVSKEGEVTSFKTYTVAKSMELKFEV-----------------------------KNKKDGQKTNKTVCDFKHGKCMLVTLVV 77
            + L+ L VN L R    VS    EVS++G   + KT T  K+MELKF++                             K KKDGQK+ K+V +      M+ T+ V
Sbjct:   94 EFLKALEVNFLLRKAATVSTPVMEVSEDGGAWTIKTSTTLKTMELKFKLGEEFDETTPDGREVTAVVTCEDGKIVTVQKAKKDGQKSTKSVREMNGADEMVYTMTV 411
[Close]
BLAST of EMLSAG00000001274 vs. C. finmarchicus
Match: gi|592882875|gb|GAXK01075500.1| (TSA: Calanus finmarchicus comp6348727_c0_seq1 transcribed RNA sequence)

HSP 1 Score: 40.0466 bits (92), Expect = 1.142e-4
Identity = 28/90 (31.11%), Postives = 48/90 (53.33%), Query Frame = 0 
Query:    1 DLLEELGVNDLFRIPVLVSNHSFEVSKEGEVTSFKTYTVAKSMELKFEVK-----NKKDGQKTNKTVCDFKHGKCMLVTLVVGSKYKSTQ 85
            ++L+ L VN L R     S  + E+++E  V +FKT T  K+ME+KF++K        DG++   T+  F++ + + V        KST+
Sbjct:   24 EMLKVLDVNLLLRKAATASTPTLEITEEDGVWTFKTSTTLKTMEMKFKLKEPFDETTPDGREVT-TLVTFENSRFITVQTAKKEGEKSTK 290
[Close]
BLAST of EMLSAG00000001274 vs. C. finmarchicus
Match: gi|592775866|gb|GAXK01178702.1| (TSA: Calanus finmarchicus comp14576_c2_seq1 transcribed RNA sequence)

HSP 1 Score: 40.0466 bits (92), Expect = 1.912e-4
Identity = 30/90 (33.33%), Postives = 46/90 (51.11%), Query Frame = 0 
Query:    1 DLLEELGVNDLFRIPVLVSNHSFEVSKEGEVTSFKTYTVAKSMELKFEVKNK-----KDGQKTNKTVCDFKHGKCMLVTLVVGSKYKSTQ 85
            + L+ L    LFR    +S+   E+S+ G     KT T  K+MELKF++  K      DG+ T+ TV +  +GK + V     +  KST+
Sbjct:   65 EFLKALDCGMLFRKAATISSPVMEISESGGGWCLKTSTTMKTMELKFKLGEKFDEHTTDGRDTS-TVVNVDNGKIVTVQTAKKAGQKSTR 331
[Close]
BLAST of EMLSAG00000001274 vs. C. finmarchicus
Match: gi|592775867|gb|GAXK01178701.1| (TSA: Calanus finmarchicus comp14576_c1_seq1 transcribed RNA sequence)

HSP 1 Score: 40.0466 bits (92), Expect = 2.363e-4
Identity = 30/90 (33.33%), Postives = 46/90 (51.11%), Query Frame = 0 
Query:    1 DLLEELGVNDLFRIPVLVSNHSFEVSKEGEVTSFKTYTVAKSMELKFEVKNK-----KDGQKTNKTVCDFKHGKCMLVTLVVGSKYKSTQ 85
            + L+ L    LFR    +S+   E+S+ G     KT T  K+MELKF++  K      DG+ T+ TV +  +GK + V     +  KST+
Sbjct:  180 EFLKALDCGMLFRKAATISSPVMEISESGGGWCLKTSTTMKTMELKFKLGEKFDEHTTDGRDTS-TVVNVDNGKIVTVQTAKKAGQKSTR 446
[Close]
BLAST of EMLSAG00000001274 vs. C. finmarchicus
Match: gi|592766794|gb|GAXK01187774.1| (TSA: Calanus finmarchicus comp10594_c5_seq1 transcribed RNA sequence)

HSP 1 Score: 28.4906 bits (62), Expect = 4.191e+0
Identity = 13/37 (35.14%), Postives = 21/37 (56.76%), Query Frame = 0 
Query:   45 LKFEVKNKKDGQKTNKTVCDFKHGKCMLVTLVVGSKY 81
            L+  +KN+   +K + TVCD+KH     VT  +  K+
Sbjct:  392 LEVHIKNRHQDKKYSCTVCDYKHSVLNRVTFHIAEKH 502
[Close]
BLAST of EMLSAG00000001274 vs. L. salmonis peptides
Match: EMLSAP00000001274 (pep:novel supercontig:LSalAtl2s:LSalAtl2s120:334020:334389:1 gene:EMLSAG00000001274 transcript:EMLSAT00000001274 description:"maker-LSalAtl2s120-snap-gene-3.2")

HSP 1 Score: 196.438 bits (498), Expect = 5.193e-66
Identity = 96/96 (100.00%), Postives = 96/96 (100.00%), Query Frame = 0 
Query:    1 DLLEELGVNDLFRIPVLVSNHSFEVSKEGEVTSFKTYTVAKSMELKFEVKNKKDGQKTNKTVCDFKHGKCMLVTLVVGSKYKSTQVFENPYIRRKQ 96
            DLLEELGVNDLFRIPVLVSNHSFEVSKEGEVTSFKTYTVAKSMELKFEVKNKKDGQKTNKTVCDFKHGKCMLVTLVVGSKYKSTQVFENPYIRRKQ
Sbjct:    1 DLLEELGVNDLFRIPVLVSNHSFEVSKEGEVTSFKTYTVAKSMELKFEVKNKKDGQKTNKTVCDFKHGKCMLVTLVVGSKYKSTQVFENPYIRRKQ 96
[Close]
BLAST of EMLSAG00000001274 vs. L. salmonis peptides
Match: EMLSAP00000004641 (pep:novel supercontig:LSalAtl2s:LSalAtl2s2426:5738:7142:1 gene:EMLSAG00000004641 transcript:EMLSAT00000004641 description:"maker-LSalAtl2s2426-augustus-gene-0.3")

HSP 1 Score: 102.064 bits (253), Expect = 1.044e-28
Identity = 64/118 (54.24%), Postives = 67/118 (56.78%), Query Frame = 0 
Query:    1 DLLEELGVNDLFRIPVLVSNHSFEVSKEGEVTSFKTYTVAKSMELKFEVKN------------------------------KKDGQKTNKTVCDFKHGKCMLVTLVVGSKYKSTQVFE 88
            DLL+ELGVN L R   LVS  SFEVSKEGEV SFKT TVAKSMELKFE                                 KKDGQK+ KTV DFK GKC  +T VVGS  K TQVFE
Sbjct:   18 DLLKELGVNVLLRKAALVSTPSFEVSKEGEVWSFKTSTVAKSMELKFEXGKKFEETTSDGRTVDTLVTLDGPTTFVSEQMAKKDGQKSTKTVRDFKEGKCTQITEVVGSDVKCTQVFE 135
[Close]
BLAST of EMLSAG00000001274 vs. L. salmonis peptides
Match: EMLSAP00000004244 (pep:novel supercontig:LSalAtl2s:LSalAtl2s222:241073:242209:-1 gene:EMLSAG00000004244 transcript:EMLSAT00000004244 description:"snap_masked-LSalAtl2s222-processed-gene-2.5")

HSP 1 Score: 68.5514 bits (166), Expect = 2.896e-16
Identity = 45/93 (48.39%), Postives = 49/93 (52.69%), Query Frame = 0 
Query:   16 VLVSNHSFEVSKEGEVTSFKTYTVAKSMELKFEV------------------------------KNKKDGQKTNKTVCDFKHGKCMLVTLVVG 78
             LVS  SFEVSKEG+V+SFKT TVAKSMELKF+V                                K DGQK+ KTV D K GKC  VT VVG
Sbjct:    6 ALVSTPSFEVSKEGKVSSFKTSTVAKSMELKFKVGKEFEETXSDGRTVDTLVTMDGPTTFVPEQTAKNDGQKSTKTVRDIKDGKCTQVTEVVG 98
[Close]
BLAST of EMLSAG00000001274 vs. L. salmonis peptides
Match: EMLSAP00000008820 (pep:novel supercontig:LSalAtl2s:LSalAtl2s549:632112:633454:-1 gene:EMLSAG00000008820 transcript:EMLSAT00000008820 description:"maker-LSalAtl2s549-snap-gene-6.7")

HSP 1 Score: 67.781 bits (164), Expect = 6.049e-16
Identity = 46/103 (44.66%), Postives = 52/103 (50.49%), Query Frame = 0 
Query:    5 ELGVNDLFRIPVLVSNHSFEVSKEGE-------------------VTSFKTYTVAKSMELKFEVKNKKDGQKTNKTVCDFKHGKCMLVTLVVGSKYKSTQVFE 88
            ELG N L R   LVS  SFEVSKEGE                   VT+F +  +A+           KDGQK+ KTV DFK GKC   T VVGS  K +QVFE
Sbjct:    3 ELGANVLLRNAALVSTPSFEVSKEGESERSLRKLHTSNVRTVNTLVTTFVSEQIAE-----------KDGQKSTKTVRDFKDGKCTQATEVVGSDVKCSQVFE 94
[Close]
BLAST of EMLSAG00000001274 vs. L. salmonis peptides
Match: EMLSAP00000007745 (pep:novel supercontig:LSalAtl2s:LSalAtl2s450:370568:370879:1 gene:EMLSAG00000007745 transcript:EMLSAT00000007745 description:"snap_masked-LSalAtl2s450-processed-gene-3.4")

HSP 1 Score: 43.8986 bits (102), Expect = 2.587e-7
Identity = 33/58 (56.90%), Postives = 38/58 (65.52%), Query Frame = 0 
Query:    2 LLEELGVNDLFRI--PV----LVSNHSFE-VSKEGEVTSFKTYTVAKSMELKFEVKNK 52
             L E+  N L +I  PV    LVS  SF+ V KEGEV SFKT TVAKSM+LKF+V  K
Sbjct:    4 FLGEIQPNILRKIQAPVIFYFLVSTPSFKGVVKEGEVRSFKTSTVAKSMKLKFKVGKK 61
[Close]
BLAST of EMLSAG00000001274 vs. L. salmonis peptides
Match: EMLSAP00000004823 (pep:novel supercontig:LSalAtl2s:LSalAtl2s254:346296:346535:1 gene:EMLSAG00000004823 transcript:EMLSAT00000004823 description:"augustus_masked-LSalAtl2s254-processed-gene-3.2")

HSP 1 Score: 43.1282 bits (100), Expect = 4.704e-7
Identity = 22/38 (57.89%), Postives = 25/38 (65.79%), Query Frame = 0 
Query:   52 KKDGQKTNKTVCDFKHGKCMLVTLVVGSKYKSTQVFEN 89
            K D QK+ KT+C FK  KC  V+ VVGS  K TQVFE 
Sbjct:   40 KLDSQKSTKTICHFKDPKCTQVSEVVGSGVKCTQVFER 77
[Close]
BLAST of EMLSAG00000001274 vs. nr
Match: gi|225712974|gb|ACO12333.1| (Cellular retinoic acid-binding protein 2 [Lepeophtheirus salmonis])

HSP 1 Score: 104.375 bits (259), Expect = 7.974e-27
Identity = 65/118 (55.08%), Postives = 68/118 (57.63%), Query Frame = 0 
Query:    1 DLLEELGVNDLFRIPVLVSNHSFEVSKEGEVTSFKTYTVAKSMELKFEVKN------------------------------KKDGQKTNKTVCDFKHGKCMLVTLVVGSKYKSTQVFE 88
            DLL+ELGVN L R   LVS  SFEVSKEGEV SFKT TVAKSMELKFEV                                KKDGQK+ KTV DFK GKC  +T VVGS  K TQVFE
Sbjct:   14 DLLKELGVNVLLRKAALVSTPSFEVSKEGEVWSFKTSTVAKSMELKFEVGKKFEETTSDGRTVDTLVTLDGPTTFVSEQMAKKDGQKSTKTVRDFKEGKCTQITEVVGSDVKCTQVFE 131
[Close]
BLAST of EMLSAG00000001274 vs. nr
Match: gi|155966175|gb|ABU41042.1| (putative cellular retinoic acid/retinol binding protein [Lepeophtheirus salmonis] >gi|225713860|gb|ACO12776.1| Cellular retinoic acid-binding protein 2 [Lepeophtheirus salmonis] >gi|290463031|gb|ADD24563.1| Cellular retinoic acid-binding protein 2 [Lepeophtheirus salmonis] >gi|290561270|gb|ADD38037.1| Cellular retinoic acid-binding protein 2 [Lepeophtheirus salmonis])

HSP 1 Score: 104.375 bits (259), Expect = 9.838e-27
Identity = 65/118 (55.08%), Postives = 68/118 (57.63%), Query Frame = 0 
Query:    1 DLLEELGVNDLFRIPVLVSNHSFEVSKEGEVTSFKTYTVAKSMELKFEVKN------------------------------KKDGQKTNKTVCDFKHGKCMLVTLVVGSKYKSTQVFE 88
            DLL+ELGVN L R   LVS  SFEVSKEGEV SFKT TVAKSMELKFEV                                KKDGQK+ KTV DFK GKC  +T VVGS  K TQVFE
Sbjct:   18 DLLKELGVNVLLRKAALVSTPSFEVSKEGEVWSFKTSTVAKSMELKFEVGKKFEETTSDGRTVDTLVTLDGPTTFVSEQMAKKDGQKSTKTVRDFKEGKCTQITEVVGSDVKCTQVFE 135
[Close]
BLAST of EMLSAG00000001274 vs. nr
Match: gi|225718480|gb|ACO15086.1| (Cellular retinoic acid-binding protein 2 [Caligus clemensi])

HSP 1 Score: 100.523 bits (249), Expect = 2.958e-25
Identity = 63/118 (53.39%), Postives = 67/118 (56.78%), Query Frame = 0 
Query:    1 DLLEELGVNDLFRIPVLVSNHSFEVSKEGEVTSFKTYTVAKSMELKFEVKN------------------------------KKDGQKTNKTVCDFKHGKCMLVTLVVGSKYKSTQVFE 88
            DLL+ELGVN L R   LVS  SFEVSKEGEV SFKT TVAK MELKFEV                                KKDGQK+ KT+ DFK GKC  +T VVGS  K TQVFE
Sbjct:   18 DLLKELGVNVLLRKAALVSTPSFEVSKEGEVWSFKTSTVAKPMELKFEVGKKFEETTSDGRVVDTLVTLDGPTTFVSEQIAKKDGQKSAKTIRDFKDGKCTQMTEVVGSDVKCTQVFE 135
[Close]
BLAST of EMLSAG00000001274 vs. nr
Match: gi|225710890|gb|ACO11291.1| (Cellular retinoic acid-binding protein 2 [Caligus rogercresseyi])

HSP 1 Score: 98.5969 bits (244), Expect = 1.837e-24
Identity = 61/118 (51.69%), Postives = 67/118 (56.78%), Query Frame = 0 
Query:    1 DLLEELGVNDLFRIPVLVSNHSFEVSKEGEVTSFKTYTVAKSMELKFEVKNK------------------------------KDGQKTNKTVCDFKHGKCMLVTLVVGSKYKSTQVFE 88
            DLL+ELGVN L R   LVS  +FEVSKEGEV SFKT TVAKSMELKFEV  K                              KDG K+ KT+ DF+ GKC  +T VVGS  K TQVFE
Sbjct:   18 DLLKELGVNVLLRKAALVSTPTFEVSKEGEVWSFKTSTVAKSMELKFEVGKKFEETTSDGRLVDTLVTLEGPTKFVSEQTAKKDGHKSTKTIRDFQDGKCTQITEVVGSDVKCTQVFE 135
[Close]
BLAST of EMLSAG00000001274 vs. nr
Match: gi|225710698|gb|ACO11195.1| (Cellular retinoic acid-binding protein 2 [Caligus rogercresseyi])

HSP 1 Score: 97.0561 bits (240), Expect = 5.644e-24
Identity = 60/118 (50.85%), Postives = 67/118 (56.78%), Query Frame = 0 
Query:    1 DLLEELGVNDLFRIPVLVSNHSFEVSKEGEVTSFKTYTVAKSMELKFEVKNK------------------------------KDGQKTNKTVCDFKHGKCMLVTLVVGSKYKSTQVFE 88
            DLL+ELGVN L R   LVS  +FEVSKEGEV SFKT T+AKSMELKFEV  K                              KDG K+ KT+ DF+ GKC  +T VVGS  K TQVFE
Sbjct:   18 DLLKELGVNVLLRKAALVSTPTFEVSKEGEVWSFKTSTMAKSMELKFEVGKKFEETTSDGRLVDTLVTLEGPTKFVSEQTAKKDGHKSTKTIRDFQDGKCTQITEVVGSDVKCTQVFE 135
[Close]
BLAST of EMLSAG00000001274 vs. nr
Match: gi|225709644|gb|ACO10668.1| (Cellular retinoic acid-binding protein 2 [Caligus rogercresseyi])

HSP 1 Score: 96.6709 bits (239), Expect = 1.028e-23
Identity = 60/118 (50.85%), Postives = 67/118 (56.78%), Query Frame = 0 
Query:    1 DLLEELGVNDLFRIPVLVSNHSFEVSKEGEVTSFKTYTVAKSMELKFEVKNK------------------------------KDGQKTNKTVCDFKHGKCMLVTLVVGSKYKSTQVFE 88
            DLL+ELGVN L R   LVS  +FEVSKEGEV SFKT TVAKSM+LKFEV  K                              KDG K+ KT+ DF+ GKC  +T VVGS  K TQVFE
Sbjct:   18 DLLKELGVNVLLRKAALVSTPTFEVSKEGEVWSFKTSTVAKSMKLKFEVGKKFEETTSDGRLVDTLVTLEGPTKFVSEQTAKKDGHKSTKTIRDFQDGKCTQITEVVGSDVKCTQVFE 135
[Close]
BLAST of EMLSAG00000001274 vs. Tigriopus kingsejongenis genes
Match: maker-scaffold747_size103044-snap-gene-0.14 (protein:Tk12097 transcript:maker-scaffold747_size103044-snap-gene-0.14-mRNA-1 annotation:"cellular retinoic acid-binding protein 2")

HSP 1 Score: 47.7506 bits (112), Expect = 1.652e-8
Identity = 40/116 (34.48%), Postives = 53/116 (45.69%), Query Frame = 0 
Query:    1 DLLEELGVNDLFRIPVLVSNHSFEVSKEGEVTSFKTYTVAKSMELKF--------------EVK---------------NKKDGQKTNKTVCDFKHGKCMLVTLVVGSKYKSTQVF 87
            + L+ L V+ L R    VS  + EVS+   V +FKT T  KSMELKF              EVK                KKDGQK+ K+V +FK  + +    V+G+    TQ F
Sbjct:   17 EFLKALEVSYLLRKAATVSTPTLEVSEADGVWTFKTSTTLKSMELKFKLGEEFDETTPDGREVKAVVVQEGNSFISTQTAKKDGQKSTKSVREFKGDEVIQTMEVLGTDIVCTQTF 132
[Close]
BLAST of EMLSAG00000001274 vs. Tigriopus kingsejongenis genes
Match: maker-scaffold25_size650667-snap-gene-0.20 (protein:Tk06682 transcript:maker-scaffold25_size650667-snap-gene-0.20-mRNA-1 annotation:"cellular retinoic acid-binding protein 2")

HSP 1 Score: 47.7506 bits (112), Expect = 1.652e-8
Identity = 40/116 (34.48%), Postives = 53/116 (45.69%), Query Frame = 0 
Query:    1 DLLEELGVNDLFRIPVLVSNHSFEVSKEGEVTSFKTYTVAKSMELKF--------------EVK---------------NKKDGQKTNKTVCDFKHGKCMLVTLVVGSKYKSTQVF 87
            + L+ L V+ L R    VS  + EVS+   V +FKT T  KSMELKF              EVK                KKDGQK+ K+V +FK  + +    V+G+    TQ F
Sbjct:   17 EFLKALEVSYLLRKAATVSTPTLEVSEADGVWTFKTSTTLKSMELKFKLGEEFDETTPDGREVKAVVVQEGNSFISTQTAKKDGQKSTKSVREFKGDEVIQTMEVLGTDIVCTQTF 132
The following BLAST results are available for this feature:
BLAST of EMLSAG00000001274 vs. GO
Analysis Date: 2014-04-02 (Blast vs. GO)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000001274 vs. C. finmarchicus
Analysis Date: 2014-05-09 (TblastN vs C. finmarchicus TSA)
Total hits: 9
Match NameE-valueIdentityDescription
gi|592856316|gb|GAXK01101228.1|2.715e-735.04TSA: Calanus finmarchicus comp6189_c0_seq1 transcr... [more]
gi|592892391|gb|GAXK01065984.1|1.040e-638.46TSA: Calanus finmarchicus comp5093_c0_seq1 transcr... [more]
gi|592766264|gb|GAXK01188304.1|3.902e-634.44TSA: Calanus finmarchicus comp11284_c1_seq2 transc... [more]
gi|592766265|gb|GAXK01188303.1|5.515e-634.44TSA: Calanus finmarchicus comp11284_c1_seq1 transc... [more]
gi|592785878|gb|GAXK01168690.1|2.550e-531.13TSA: Calanus finmarchicus comp891_c0_seq1 transcri... [more]
gi|592882875|gb|GAXK01075500.1|1.142e-431.11TSA: Calanus finmarchicus comp6348727_c0_seq1 tran... [more]
gi|592775866|gb|GAXK01178702.1|1.912e-433.33TSA: Calanus finmarchicus comp14576_c2_seq1 transc... [more]
gi|592775867|gb|GAXK01178701.1|2.363e-433.33TSA: Calanus finmarchicus comp14576_c1_seq1 transc... [more]
gi|592766794|gb|GAXK01187774.1|4.191e+035.14TSA: Calanus finmarchicus comp10594_c5_seq1 transc... [more]
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BLAST of EMLSAG00000001274 vs. L. salmonis peptides
Analysis Date: 2014-05-10 (Blastp vs. self)
Total hits: 6
Match NameE-valueIdentityDescription
EMLSAP000000012745.193e-66100.00pep:novel supercontig:LSalAtl2s:LSalAtl2s120:33402... [more]
EMLSAP000000046411.044e-2854.24pep:novel supercontig:LSalAtl2s:LSalAtl2s2426:5738... [more]
EMLSAP000000042442.896e-1648.39pep:novel supercontig:LSalAtl2s:LSalAtl2s222:24107... [more]
EMLSAP000000088206.049e-1644.66pep:novel supercontig:LSalAtl2s:LSalAtl2s549:63211... [more]
EMLSAP000000077452.587e-756.90pep:novel supercontig:LSalAtl2s:LSalAtl2s450:37056... [more]
EMLSAP000000048234.704e-757.89pep:novel supercontig:LSalAtl2s:LSalAtl2s254:34629... [more]
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BLAST of EMLSAG00000001274 vs. SwissProt
Analysis Date: 2017-02-10 (Blastp vs. SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000001274 vs. Select Arthropod Genomes
Analysis Date: 2017-02-20 (Blastp vs. Selected Arthropods)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000001274 vs. nr
Analysis Date: 2017-02-20 (Blastp vs. NR (2/2017))
Total hits: 6
Match NameE-valueIdentityDescription
gi|225712974|gb|ACO12333.1|7.974e-2755.08Cellular retinoic acid-binding protein 2 [Lepeopht... [more]
gi|155966175|gb|ABU41042.1|9.838e-2755.08putative cellular retinoic acid/retinol binding pr... [more]
gi|225718480|gb|ACO15086.1|2.958e-2553.39Cellular retinoic acid-binding protein 2 [Caligus ... [more]
gi|225710890|gb|ACO11291.1|1.837e-2451.69Cellular retinoic acid-binding protein 2 [Caligus ... [more]
gi|225710698|gb|ACO11195.1|5.644e-2450.85Cellular retinoic acid-binding protein 2 [Caligus ... [more]
gi|225709644|gb|ACO10668.1|1.028e-2350.85Cellular retinoic acid-binding protein 2 [Caligus ... [more]
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BLAST of EMLSAG00000001274 vs. Tigriopus kingsejongenis genes
Analysis Date: 2018-04-18 (Blastp vs. Tigriopus kingsejongensis proteins)
Total hits: 2
Match NameE-valueIdentityDescription
maker-scaffold747_size103044-snap-gene-0.141.652e-834.48protein:Tk12097 transcript:maker-scaffold747_size1... [more]
maker-scaffold25_size650667-snap-gene-0.201.652e-834.48protein:Tk06682 transcript:maker-scaffold25_size65... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
LSalAtl2s120supercontigLSalAtl2s120:334020..334389 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
ensembl2013-09-26 .965016
Blast vs. GO2014-04-02
TblastN vs C. finmarchicus TSA2014-05-09
Blastp vs. self2014-05-10
Blastp vs. SwissProt2017-02-10
Blastp vs. Selected Arthropods2017-02-20
Blastp vs. NR (2/2017)2017-02-20
Blastp vs. Tigriopus kingsejongensis proteins2018-04-18
Properties
Property NameValue
Logic nameensemblgenomes
Descriptionmaker-LSalAtl2s120-snap-gene-3.2
Biotypeprotein_coding
EvidenceIEA
NoteCellular retinoic acid-binding protein 2 [Lepeophtheirus salmonis]
Cross References
External references for this gene
DatabaseAccession
Ensembl Metazoa (gene)EMLSAG00000001274 (primary cross-reference)
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
EMLSAT00000001274EMLSAT00000001274-697121Lepeophtheirus salmonismRNA


Sequences
The following sequences are available for this feature:

gene from alignment at LSalAtl2s120:334020..334389+

Legend: mRNA
Hold the cursor over a type above to highlight its positions in the sequence below.
>EMLSAG00000001274-684040 ID=EMLSAG00000001274-684040|Name=EMLSAG00000001274|organism=Lepeophtheirus salmonis|type=gene|length=370bp|location=Sequence derived from alignment at LSalAtl2s120:334020..334389+ (Lepeophtheirus salmonis)
GACCTCTTGGAGGAGCTTGGTGTCAATGACTTATTTCGTATACCCGTCCT
TGTGTCGAATCATAGCTTTGAAGTCTCAAAAGAGGGCGAAGTGACGTCTT
TTAAAACTTATACAGTAGCCAAGTCAATGGAATTGAAGTTTGAAGTCAAA
AATAAGTTTCGAGAAKCTTCCATAGTTGAGTGGATKKTCTCGCCATCGTG
GYCGAAGCCACAGCTTTAGTTCCTGAAAAATAGCCAGAAAGGATGGACAA
AAGACTAACAAGACTGTTTGTGACTTCAAGCATGGAAAGTGTATGCTAGT
AACTTTGGTAGTTGGATCTAAATATAAATCCACTCAAGTCTTTGAAAATC
CATACATCAGGAGGAAACAG
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