EMLSAG00000001350, EMLSAG00000001350-684116 (gene) Lepeophtheirus salmonis
Overview
Associated RNAi Experiments
Nothing found Homology
BLAST of EMLSAG00000001350 vs. C. finmarchicus
Match: gi|592820902|gb|GAXK01133666.1| (TSA: Calanus finmarchicus comp738690_c0_seq3 transcribed RNA sequence) HSP 1 Score: 31.187 bits (69), Expect = 7.140e-1 Identity = 11/25 (44.00%), Postives = 15/25 (60.00%), Query Frame = 0 Query: 86 PRRCMRYFCHEGRLIWTFNWQSRNA 110 PR C++YF G I +FN+ NA Sbjct: 91 PRGCLQYFTESGGTIQSFNYDGVNA 165
BLAST of EMLSAG00000001350 vs. L. salmonis peptides
Match: EMLSAP00000001350 (pep:novel supercontig:LSalAtl2s:LSalAtl2s122:1312921:1313365:-1 gene:EMLSAG00000001350 transcript:EMLSAT00000001350 description:"maker-LSalAtl2s122-augustus-gene-12.9") HSP 1 Score: 260.381 bits (664), Expect = 2.765e-90 Identity = 127/127 (100.00%), Postives = 127/127 (100.00%), Query Frame = 0 Query: 1 MKLALFLLALSILAVNDAVGKTKKCYFNRRSYNSGALVRSFYQCCIQMKCGSNGKVYYTRYGARCNCCRDPYYSLSLIRSGQYGRPRRCMRYFCHEGRLIWTFNWQSRNAGECSTRRIDSSRENLLN 127 MKLALFLLALSILAVNDAVGKTKKCYFNRRSYNSGALVRSFYQCCIQMKCGSNGKVYYTRYGARCNCCRDPYYSLSLIRSGQYGRPRRCMRYFCHEGRLIWTFNWQSRNAGECSTRRIDSSRENLLN Sbjct: 1 MKLALFLLALSILAVNDAVGKTKKCYFNRRSYNSGALVRSFYQCCIQMKCGSNGKVYYTRYGARCNCCRDPYYSLSLIRSGQYGRPRRCMRYFCHEGRLIWTFNWQSRNAGECSTRRIDSSRENLLN 127
BLAST of EMLSAG00000001350 vs. L. salmonis peptides
Match: EMLSAP00000005225 (pep:novel supercontig:LSalAtl2s:LSalAtl2s276:3617:4061:-1 gene:EMLSAG00000005225 transcript:EMLSAT00000005225 description:"maker-LSalAtl2s276-augustus-gene-0.5") HSP 1 Score: 256.914 bits (655), Expect = 6.491e-89 Identity = 125/127 (98.43%), Postives = 125/127 (98.43%), Query Frame = 0 Query: 1 MKLALFLLALSILAVNDAVGKTKKCYFNRRSYNSGALVRSFYQCCIQMKCGSNGKVYYTRYGARCNCCRDPYYSLSLIRSGQYGRPRRCMRYFCHEGRLIWTFNWQSRNAGECSTRRIDSSRENLLN 127 MKLALFLLALSILAVNDAVGKTKKCYFNRRSYNSGALVRSFYQCCIQMKCGSNGKVYY RYG RCNCCRDPYYSLSLIRSGQYGRPRRCMRYFCHEGRLIWTFNWQSRNAGECSTRRIDSSRENLLN Sbjct: 1 MKLALFLLALSILAVNDAVGKTKKCYFNRRSYNSGALVRSFYQCCIQMKCGSNGKVYYNRYGTRCNCCRDPYYSLSLIRSGQYGRPRRCMRYFCHEGRLIWTFNWQSRNAGECSTRRIDSSRENLLN 127
BLAST of EMLSAG00000001350 vs. L. salmonis peptides
Match: EMLSAP00000005226 (pep:novel supercontig:LSalAtl2s:LSalAtl2s276:5888:6502:1 gene:EMLSAG00000005226 transcript:EMLSAT00000005226 description:"maker-LSalAtl2s276-augustus-gene-0.4") HSP 1 Score: 87.4261 bits (215), Expect = 6.414e-23 Identity = 49/108 (45.37%), Postives = 63/108 (58.33%), Query Frame = 0 Query: 1 MKLALFLLALSILAVNDAVGKTKKCYFNRRSYNSGALVRSFYQCCIQMKCGSNGKVYYTRYGA--RCNCCRDPYYSLSLIRSGQYGRPRRCMRYFCHEGRLIWTFNWQ 106 MK+ALFLLALSIL VN A K K C +N ++Y G CC +M C SNG Y YG +C C DP+ + I GQYGR + C+RYFC GR + T +++ Sbjct: 1 MKVALFLLALSILVVNGA-SKVKLCNYNGKNYRRGQTALMLPFCCTKMVCSSNGYFSYPTYGKGKKCGXCIDPFNKNNFIFDGQYGRLKGCLRYFCSHGRHVLTTHFK 107
BLAST of EMLSAG00000001350 vs. L. salmonis peptides
Match: EMLSAP00000008371 (pep:novel supercontig:LSalAtl2s:LSalAtl2s511:15508:16532:1 gene:EMLSAG00000008371 transcript:EMLSAT00000008371 description:"maker-LSalAtl2s511-augustus-gene-0.2") HSP 1 Score: 80.4925 bits (197), Expect = 3.532e-20 Identity = 42/108 (38.89%), Postives = 63/108 (58.33%), Query Frame = 0 Query: 1 MKLALFLLALSILAVNDAVGKTKKCYFNRRSYNSGALVRSFYQCCIQMKCGSNGKVYYTRYG--ARCNCCRDPYYSL-SLIRSGQYGRPRRCMRYFCHEGRLIWTFNW 105 MK + L A DA K C++N + Y G+++ +F+ CC+QM C G +Y G +C CCRDPY S SLI++G YG+ + R+FC +GRL+ TF++ Sbjct: 2 MKFVMLLSLAMAXAFVDA--KPSCCHYNGQCYQPGSIITTFHHCCMQMTCSKGGTIYTNIIGKPKKCGCCRDPYNSPHSLIQNGGYGKTKFGRRFFCCDGRLVHTFSF 107
BLAST of EMLSAG00000001350 vs. L. salmonis peptides
Match: EMLSAP00000001344 (pep:novel supercontig:LSalAtl2s:LSalAtl2s1228:119152:119577:-1 gene:EMLSAG00000001344 transcript:EMLSAT00000001344 description:"snap_masked-LSalAtl2s1228-processed-gene-0.9") HSP 1 Score: 68.5514 bits (166), Expect = 1.231e-15 Identity = 38/109 (34.86%), Postives = 58/109 (53.21%), Query Frame = 0 Query: 5 LFLLALSILAVNDAVGKTKKCYFNRRSYNSGALVRSFYQCCIQMKCGSNGKVYYTRYGAR---CNCCRDPYYS-LSLIRSGQYGRPRRCMRYFCHEGRLIWTFNWQSRN 109 + LL L+ +A ++ C FN + Y G+++ +F CC QM C G T + C CCRDPY LI++G YGR + R+FC +G+L+ TF++ N Sbjct: 4 VILLCLA-MAATFVEAQSTCCQFNGQCYKPGSIITTFPHCCTQMICSKKGPSSDTNVIGKPKTCGCCRDPYNGKHGLIQNGGYGRTKFGRRFFCCDGKLVPTFSFMKPN 111 The following BLAST results are available for this feature:
BLAST of EMLSAG00000001350 vs. GO
Analysis Date: 2014-04-02 (Blast vs. GO) Total hits: 0
BLAST of EMLSAG00000001350 vs. C. finmarchicus
Analysis Date: 2014-05-09 (TblastN vs C. finmarchicus TSA) Total hits: 1
BLAST of EMLSAG00000001350 vs. L. salmonis peptides
Analysis Date: 2014-05-10 (Blastp vs. self) Total hits: 5
BLAST of EMLSAG00000001350 vs. SwissProt
Analysis Date: 2017-02-10 (Blastp vs. SwissProt) Total hits: 0
BLAST of EMLSAG00000001350 vs. Select Arthropod Genomes
Analysis Date: 2017-02-20 (Blastp vs. Selected Arthropods) Total hits: 0
BLAST of EMLSAG00000001350 vs. nr
Analysis Date: 2017-02-20 (Blastp vs. NR (2/2017)) Total hits: 0
BLAST of EMLSAG00000001350 vs. Tigriopus kingsejongenis genes
Analysis Date: 2018-04-18 (Blastp vs. Tigriopus kingsejongensis proteins) Total hits: 0
Alignments
The following features are aligned
Analyses
This gene is derived from or has results from the following analyses
Properties
Cross References
External references for this gene
Relationships
The following mRNA feature(s) are a part of this gene:
Sequences
The following sequences are available for this feature:
gene from alignment at LSalAtl2s122:1312921..1313365- Legend: mRNA Hold the cursor over a type above to highlight its positions in the sequence below.>EMLSAG00000001350-684116 ID=EMLSAG00000001350-684116|Name=EMLSAG00000001350|organism=Lepeophtheirus salmonis|type=gene|length=445bp|location=Sequence derived from alignment at LSalAtl2s122:1312921..1313365- (Lepeophtheirus salmonis)back to top Add to Basket
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